BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0386.0020.p (297 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KK79.1 B3KK79_9BACI Integrase family protein 341 5e-92 B2A500.1 B2A500_NATTJ Tyrosine recombinase XerD subunit 330 8e-89 A1HTQ3.1 A1HTQ3_9FIRM Tyrosine recombinase XerD 330 1e-88 B1DJC5.1 B1DJC5_9BACL Tyrosine recombinase XerD 323 1e-86 C0ZC49.1 C0ZC49_BREBN Probable tyrosine recombinase 316 2e-84 >B3KK79.1 B3KK79_9BACI Integrase family protein Length = 294 Score = 341 bits (874), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 168/296 (56%), Positives = 221/296 (74%), Gaps = 2/296 (0%) Query: 1 MRSHLQPFMQYLSEDKGLSPSTLESYGRDISQFMDFADERGLSSPEDIKRSHIMLYLXXX 60 M+ +L ++QYL ++KGLS ST+ SY D+ F+ FA ER ++ P ++ R+ + LY+ Sbjct: 1 MKPYLDEYVQYLEDEKGLSRSTIASYRADLQGFLAFAAEREVTHPREVNRTLLGLYVGRL 60 Query: 61 XXXXXXXXTVNRNTVSLRAFFHYLLRERLIGQDPTLDMDKIKPSSKPPMVLSVEEMDRLL 120 ++ R T SLR+FF YL+R+ +I QDPT +D KP KPP L+VE++D+LL Sbjct: 61 RQQGKAASSLLRCTASLRSFFQYLVRQAVIVQDPTQLLDNPKPERKPPKSLTVEQVDKLL 120 Query: 121 NAPGDDTPQGKRDKAMLELLYATGIRVSELISLNVEDVHTEMKYVRCTGASGKERIVPIG 180 +AP TPQG RDKAMLELLYA+GI+VSEL++L++ D+H EM+++RC + GKERI+PI Sbjct: 121 SAPDSGTPQGARDKAMLELLYASGIKVSELVNLSIHDIHLEMRFLRCAVSGGKERILPIT 180 Query: 181 AMAAESVAQYTTGMRDKLLRGNLNEPALFLNSLGGRLTRQGFWKIIKKYAREAQIEQDIT 240 +AAESVA Y MRDKL+R + E ALFLNSLG RLTRQGFWKIIKKY + A I++DIT Sbjct: 181 PIAAESVAFYVRDMRDKLMR-DAGEDALFLNSLGTRLTRQGFWKIIKKYGKLAGIDEDIT 239 Query: 241 PHTLRHSFAAHLLEGGADLRSVQQMLGHSDISTTQIYSGIARKNMKEVYESYHPRA 296 PHTLRHSFA HLL GADLRSVQ+MLGHS +STT +Y A+K+MKEVY+ YHPR+ Sbjct: 240 PHTLRHSFAMHLLGNGADLRSVQEMLGHSALSTTGMYQS-AKKSMKEVYDHYHPRS 294 >B2A500.1 B2A500_NATTJ Tyrosine recombinase XerD subunit Length = 295 Score = 330 bits (847), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 159/296 (53%), Positives = 214/296 (72%), Gaps = 1/296 (0%) Query: 1 MRSHLQPFMQYLSEDKGLSPSTLESYGRDISQFMDFADERGLSSPEDIKRSHIMLYLXXX 60 M + F+ YL+ ++GLS +TL SY RD+ F++F +++G++ +++KR+HIM YL Sbjct: 1 MEKTVHEFIYYLNVERGLSENTLNSYLRDLKNFLEFLNQQGVTKWQEVKRTHIMKYLIFM 60 Query: 61 XXXXXXXXTVNRNTVSLRAFFHYLLRERLIGQDPTLDMDKIKPSSKPPMVLSVEEMDRLL 120 TV RN S+R+FF +LL+E +I ++P+ D++ K K P +LS +E+D+LL Sbjct: 61 KEKGKASATVTRNIASVRSFFQFLLQEGMISENPSTDLETPKQEKKLPEILSPQEVDKLL 120 Query: 121 NAPGDDTPQGKRDKAMLELLYATGIRVSELISLNVEDVHTEMKYVRCTGASGKERIVPIG 180 N P +GKRDKAMLE+LYATG+RVSELISLNVE V + Y+ C G KERIVP+G Sbjct: 121 NQPDTTDFKGKRDKAMLEVLYATGMRVSELISLNVEHVDSNNGYILCKGKGDKERIVPLG 180 Query: 181 AMAAESVAQYTTGMRDKLLRGNLNEPALFLNSLGGRLTRQGFWKIIKKYAREAQIEQDIT 240 MA +SV+ Y + R + LR NL+EPALFLN G RL+RQGFWKI+KKYA + I+Q IT Sbjct: 181 KMAIKSVSDYISKSRPQ-LRKNLSEPALFLNHHGKRLSRQGFWKILKKYAEKIGIKQKIT 239 Query: 241 PHTLRHSFAAHLLEGGADLRSVQQMLGHSDISTTQIYSGIARKNMKEVYESYHPRA 296 PHTLRHSFA HLLE GADLR+VQ+MLGHSDISTTQIY+ + ++ +K+VY HPRA Sbjct: 240 PHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQIYTHLTKQRLKDVYSKSHPRA 295 >A1HTQ3.1 A1HTQ3_9FIRM Tyrosine recombinase XerD Length = 295 Score = 330 bits (845), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 159/296 (53%), Positives = 210/296 (70%), Gaps = 1/296 (0%) Query: 1 MRSHLQPFMQYLSEDKGLSPSTLESYGRDISQFMDFADERGLSSPEDIKRSHIMLYLXXX 60 M S++ F+ YL+ ++GL+ +TLESYGRD+ QF F L +D R+ I+ YL Sbjct: 1 MDSYVDEFINYLAVERGLAQNTLESYGRDLRQFQLFLQNDKLDIIKDSNRNTILNYLNNL 60 Query: 61 XXXXXXXXTVNRNTVSLRAFFHYLLRERLIGQDPTLDMDKIKPSSKPPMVLSVEEMDRLL 120 T++RN ++++F+ YL+RER I +DP +++ K K P +LS+ E++ LL Sbjct: 61 QSKGRAVSTISRNLAAIKSFYQYLVRERYIDKDPAANLESPKLEKKLPKILSIAEVEELL 120 Query: 121 NAPGDDTPQGKRDKAMLELLYATGIRVSELISLNVEDVHTEMKYVRCTGASGKERIVPIG 180 P P G RDKAMLELLYATGIRVSELISLN+ DV+ +M Y++C G KERIVP+G Sbjct: 121 KQPNSLLPTGLRDKAMLELLYATGIRVSELISLNITDVNLDMGYIKCYGKGAKERIVPLG 180 Query: 181 AMAAESVAQYTTGMRDKLLRGNLNEPALFLNSLGGRLTRQGFWKIIKKYAREAQIEQDIT 240 ++AA+ V +Y R KL+R +EPALF+N G RLTRQGFWKIIKKYA+EA I ++IT Sbjct: 181 SIAAKCVQEYIAKGRPKLVR-TYDEPALFVNHHGNRLTRQGFWKIIKKYAQEANITKEIT 239 Query: 241 PHTLRHSFAAHLLEGGADLRSVQQMLGHSDISTTQIYSGIARKNMKEVYESYHPRA 296 PHTLRHSFA HLLE GADLRSVQ+MLGH+DISTTQIY+ + + +KEVY+ HPRA Sbjct: 240 PHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHVTKNRLKEVYDKAHPRA 295 >B1DJC5.1 B1DJC5_9BACL Tyrosine recombinase XerD Length = 296 Score = 323 bits (828), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 154/296 (52%), Positives = 210/296 (70%) Query: 1 MRSHLQPFMQYLSEDKGLSPSTLESYGRDISQFMDFADERGLSSPEDIKRSHIMLYLXXX 60 M++ ++ F+QYL ++ LS STLESYGRD+ +D+ +++ +++ D+ R H+ YL Sbjct: 1 MKAQVESFIQYLMNERALSSSTLESYGRDLQGLLDYLEQQSIANVADVHRHHLSHYLLRL 60 Query: 61 XXXXXXXXTVNRNTVSLRAFFHYLLRERLIGQDPTLDMDKIKPSSKPPMVLSVEEMDRLL 120 TV+R+ S+RAFFHYL I +P + ++ K K P VLS+E LL Sbjct: 61 KESGRKTSTVSRHIASIRAFFHYLAVNGYIQLNPAIYIESPKQEKKEPSVLSMENAGLLL 120 Query: 121 NAPGDDTPQGKRDKAMLELLYATGIRVSELISLNVEDVHTEMKYVRCTGASGKERIVPIG 180 P T GKRDKAMLELLYATGIRVSELISLNV+ V++++ +RC G+ KERI+P G Sbjct: 121 ETPQPVTAAGKRDKAMLELLYATGIRVSELISLNVDSVNSQLNIIRCVGSGMKERIIPFG 180 Query: 181 AMAAESVAQYTTGMRDKLLRGNLNEPALFLNSLGGRLTRQGFWKIIKKYAREAQIEQDIT 240 MAA ++ Y R +LLR + +EPALFLN LG R+TRQGFWK++KKYA+EA I ++IT Sbjct: 181 RMAAAALDDYLQNGRAELLRQSEDEPALFLNQLGTRMTRQGFWKMVKKYAKEAGISEEIT 240 Query: 241 PHTLRHSFAAHLLEGGADLRSVQQMLGHSDISTTQIYSGIARKNMKEVYESYHPRA 296 PHTLRHSFAAHLLE GADLR+VQ++LGH+DISTTQ Y+ +++ MK++Y + HPRA Sbjct: 241 PHTLRHSFAAHLLENGADLRAVQELLGHADISTTQRYTKVSKVKMKDIYSNAHPRA 296 >C0ZC49.1 C0ZC49_BREBN Probable tyrosine recombinase Length = 295 Score = 316 bits (809), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 151/296 (51%), Positives = 212/296 (71%), Gaps = 1/296 (0%) Query: 1 MRSHLQPFMQYLSEDKGLSPSTLESYGRDISQFMDFADERGLSSPEDIKRSHIMLYLXXX 60 M S + F+ +L+ +KGLS +TLESY RD+ F + E+G++ ED R+HI+ YL Sbjct: 1 MDSLIDQFIHFLTVEKGLSRNTLESYQRDMVAFTSYLQEQGVTRVEDSTRTHIIGYLLVL 60 Query: 61 XXXXXXXXTVNRNTVSLRAFFHYLLRERLIGQDPTLDMDKIKPSSKPPMVLSVEEMDRLL 120 T++RN S+RAF+ +L+R++ I +DP++ ++ K + P VLSVEE++RLL Sbjct: 61 REKGRATATLSRNMASIRAFYQFLIRDKYIDKDPSIHLETPKIEKRLPKVLSVEEVERLL 120 Query: 121 NAPGDDTPQGKRDKAMLELLYATGIRVSELISLNVEDVHTEMKYVRCTGASGKERIVPIG 180 +P + P G RDKAMLELLYATGIRVSEL++L+ DV+ +M +V+C G KERI+P+G Sbjct: 121 ESPPVNHPAGLRDKAMLELLYATGIRVSELVNLDSADVNLDMGFVKCLGKGSKERIIPLG 180 Query: 181 AMAAESVAQYTTGMRDKLLRGNLNEPALFLNSLGGRLTRQGFWKIIKKYAREAQIEQDIT 240 ++A + V Y R K+++G + ALFLN LG ++TRQGFWKIIK+YA+++ I +IT Sbjct: 181 SVAIQMVRHYLQAGRPKMVKGT-GDTALFLNHLGKQITRQGFWKIIKRYAQKSNIRAEIT 239 Query: 241 PHTLRHSFAAHLLEGGADLRSVQQMLGHSDISTTQIYSGIARKNMKEVYESYHPRA 296 PHTLRHSFA HLLE GADLRSVQ+MLGH+DISTTQIY+ + R +K++Y HPRA Sbjct: 240 PHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHVTRTRIKDIYAKTHPRA 295 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.134 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,662,632,459 Number of extensions: 64062435 Number of successful extensions: 161047 Number of sequences better than 1.0e-05: 5369 Number of HSP's gapped: 154322 Number of HSP's successfully gapped: 5375 Length of query: 297 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 162 Effective length of database: 1,788,859,178 Effective search space: 289795186836 Effective search space used: 289795186836 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)