BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0386.0018.p (155 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KK77.1 B3KK77_9BACI Ferric-uptake regulator 293 5e-78 B1DJD0.1 B1DJD0_9BACL Ferric uptake regulator, Fur family 275 8e-73 Q2B6A5.1 Q2B6A5_9BACI Fe2+/Zn2+ uptake regulation protein 228 2e-58 Q9KCP2.1 Q9KCP2_BACHD Ferric uptake regulation protein 225 8e-58 B1HRL9.1 B1HRL9_LYSSC Ferric uptake regulation protein (Ferric u... 225 8e-58 >B3KK77.1 B3KK77_9BACI Ferric-uptake regulator Length = 154 Score = 293 bits (749), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 139/154 (90%), Positives = 146/154 (94%) Query: 1 MEARIDKIKQQLQSQGYKLTPQREATLRVLLENEEDHLSAEDVFMLVKEKAPEIGLATVY 60 MEARIDKIKQQLQSQGYKLTPQREAT+ VLLENE+DHLSAEDVFMLVKEKAPEIGLATVY Sbjct: 1 MEARIDKIKQQLQSQGYKLTPQREATVSVLLENEDDHLSAEDVFMLVKEKAPEIGLATVY 60 Query: 61 RTLELLSELHVVEKINFGDGVARYDLRTDTAKHHHHHLICVQCGTMDEIREDWLGPLEER 120 RTLELLSELHVVEKINFGDGVARYDLRTDT+KHHHHHLIC QCG+MDEIREDWLGPLEER Sbjct: 61 RTLELLSELHVVEKINFGDGVARYDLRTDTSKHHHHHLICTQCGSMDEIREDWLGPLEER 120 Query: 121 LEKEFNFTVLDHRLDFHGICYRCKDKNNTDSNPS 154 LE+EFNFTV DHRLDFHGICYRCK+K D + S Sbjct: 121 LEREFNFTVHDHRLDFHGICYRCKEKGKNDQDKS 154 >B1DJD0.1 B1DJD0_9BACL Ferric uptake regulator, Fur family Length = 152 Score = 275 bits (704), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 130/152 (85%), Positives = 144/152 (94%), Gaps = 1/152 (0%) Query: 1 MEARIDKIKQQLQSQGYKLTPQREATLRVLLENEEDHLSAEDVFMLVKEKAPEIGLATVY 60 MEARI+KIKQQLQSQGYKLTPQREAT+RVLLENEEDHLSAEDVFMLVK+KAPEIGLATVY Sbjct: 1 MEARIEKIKQQLQSQGYKLTPQREATVRVLLENEEDHLSAEDVFMLVKDKAPEIGLATVY 60 Query: 61 RTLELLSELHVVEKINFGDGVARYDLRTDTAKHHHHHLICVQCGTMDEIREDWLGPLEER 120 RTLELLSE+HVVEK+NFGDGVARYDLRTD++KHHHHHLICVQCG MDEI+EDWL PLEER Sbjct: 61 RTLELLSEMHVVEKLNFGDGVARYDLRTDSSKHHHHHLICVQCGAMDEIKEDWLLPLEER 120 Query: 121 LEKEFNFTVLDHRLDFHGICYRCKDKNNTDSN 152 LE+E+ FTV+DHRLDF G+C+RC + NN SN Sbjct: 121 LEQEYGFTVIDHRLDFQGVCHRC-NANNDKSN 151 >Q2B6A5.1 Q2B6A5_9BACI Fe2+/Zn2+ uptake regulation protein Length = 166 Score = 228 bits (580), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 104/149 (69%), Positives = 129/149 (86%) Query: 1 MEARIDKIKQQLQSQGYKLTPQREATLRVLLENEEDHLSAEDVFMLVKEKAPEIGLATVY 60 ME RID+IK+QL S YKLTPQREAT+RVLLENEEDHLSAEDV++LVKEK+PEIGLATVY Sbjct: 13 METRIDRIKKQLHSSSYKLTPQREATVRVLLENEEDHLSAEDVYLLVKEKSPEIGLATVY 72 Query: 61 RTLELLSELHVVEKINFGDGVARYDLRTDTAKHHHHHLICVQCGTMDEIREDWLGPLEER 120 RTLELL+EL +V+KINFGDGV+RYDLR + A H HHHL+C++CG +DEI++D L +E Sbjct: 73 RTLELLTELKIVDKINFGDGVSRYDLRQEGAAHFHHHLVCIECGAVDEIQDDLLEDVEAI 132 Query: 121 LEKEFNFTVLDHRLDFHGICYRCKDKNNT 149 +E+++NF + DHRL FHGICYRC+DK + Sbjct: 133 VERDWNFKIKDHRLTFHGICYRCQDKEES 161 >Q9KCP2.1 Q9KCP2_BACHD Ferric uptake regulation protein Length = 150 Score = 225 bits (574), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 105/144 (72%), Positives = 128/144 (88%) Query: 1 MEARIDKIKQQLQSQGYKLTPQREATLRVLLENEEDHLSAEDVFMLVKEKAPEIGLATVY 60 ME R+D+IK+QL SQ YKLTPQREAT++VLLE+EEDHLSAEDV++LVKEKAPEIGLATVY Sbjct: 1 MEKRLDRIKKQLHSQSYKLTPQREATVKVLLEHEEDHLSAEDVYLLVKEKAPEIGLATVY 60 Query: 61 RTLELLSELHVVEKINFGDGVARYDLRTDTAKHHHHHLICVQCGTMDEIREDWLGPLEER 120 RTLELL+EL VV+KINFGDGV+RYDLR + A H HHHL+C++CG +DEI+ED LG +EE Sbjct: 61 RTLELLTELKVVDKINFGDGVSRYDLRQEGADHFHHHLVCIECGAVDEIQEDLLGDVEEI 120 Query: 121 LEKEFNFTVLDHRLDFHGICYRCK 144 +E E+NF + DHRL FHGIC+RC+ Sbjct: 121 VESEWNFKIKDHRLTFHGICHRCQ 144 >B1HRL9.1 B1HRL9_LYSSC Ferric uptake regulation protein (Ferric uptake regulator) Length = 154 Score = 225 bits (574), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 105/148 (70%), Positives = 128/148 (86%) Query: 1 MEARIDKIKQQLQSQGYKLTPQREATLRVLLENEEDHLSAEDVFMLVKEKAPEIGLATVY 60 ME+RID+IK+QL S YKLTPQREAT+ VLLE+EEDHLSAEDV++LVKEKAPEIGLATVY Sbjct: 1 MESRIDRIKKQLHSASYKLTPQREATVAVLLEHEEDHLSAEDVYLLVKEKAPEIGLATVY 60 Query: 61 RTLELLSELHVVEKINFGDGVARYDLRTDTAKHHHHHLICVQCGTMDEIREDWLGPLEER 120 RTLELL+EL +V+KINFGDGV+RYDLR + A H HHHL+C++CG +DEI+ED L +E Sbjct: 61 RTLELLTELKIVDKINFGDGVSRYDLRQEGAAHFHHHLVCIECGAVDEIQEDLLEDVEAV 120 Query: 121 LEKEFNFTVLDHRLDFHGICYRCKDKNN 148 +EK +NF + DHRL FHGIC+RC DKN+ Sbjct: 121 VEKRWNFIIKDHRLTFHGICWRCHDKND 148 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 937,483,442 Number of extensions: 36103512 Number of successful extensions: 108423 Number of sequences better than 1.0e-05: 2516 Number of HSP's gapped: 106154 Number of HSP's successfully gapped: 2516 Length of query: 155 Length of database: 3,060,696,203 Length adjustment: 116 Effective length of query: 39 Effective length of database: 1,967,858,463 Effective search space: 76746480057 Effective search space used: 76746480057 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)