BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0386.0017.p (218 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KK76.1 B3KK76_9BACI Stage II sporulation protein M 231 3e-59 B1DJD1.1 B1DJD1_9BACL Stage II sporulation protein M 132 3e-29 B4BLA7.1 B4BLA7_9BACI Stage II sporulation protein M 130 6e-29 A4IQJ4.1 A4IQJ4_GEOTN Stage II sporulation protein M 129 2e-28 C0ZC46.1 C0ZC46_BREBN Stage II sporulation protein M 128 3e-28 >B3KK76.1 B3KK76_9BACI Stage II sporulation protein M Length = 207 Score = 231 bits (590), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 116/207 (56%), Positives = 145/207 (70%) Query: 9 MRSLRLMMKEQTPLYXXXXXXXXXXXXXXXXXXSALTLDQQQELGDYLGNFFVTVDQQGL 68 M+S R K+QT LY +AL+L+QQQE+ YL +FFV V G Sbjct: 1 MQSFRQAFKDQTMLYVFVGVLFLVGVLFGALMVNALSLEQQQEMARYLNHFFVNVQDGGE 60 Query: 69 PAAPDSYWDIAALNLKWIALIWILGLSVIGLPGILILDFLKGVLIGFTVGCMVSEYSWHG 128 + SYW IAAL+LKWI LIWILGLSVIGLPGILILDFLKGVLIGFTVG +V +YSW G Sbjct: 61 SMSQSSYWSIAALHLKWIGLIWILGLSVIGLPGILILDFLKGVLIGFTVGYLVGQYSWKG 120 Query: 129 MLFALVSVAPHNLVLIPVLLVGSAAAIAFSLLMIRSRVLGQRRSPVTRPFVMYTVLSFGL 188 +LFALVS+AP NL++IPVL++ S AAI FSL +IR R + R + +PF Y +L+F + Sbjct: 121 LLFALVSIAPQNLLIIPVLMMCSVAAITFSLYIIRDRFIMNRGGSMMKPFASYAMLTFFM 180 Query: 189 AVLVLGISGFEAWVTPTMMRWVTPLLV 215 +L LG++ FE WVTP MMRWVTP+L+ Sbjct: 181 VMLTLGVASFETWVTPAMMRWVTPMLL 207 >B1DJD1.1 B1DJD1_9BACL Stage II sporulation protein M Length = 214 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 76/208 (36%), Positives = 123/208 (59%), Gaps = 3/208 (1%) Query: 9 MRS--LRLMMKEQTPLYXXXXXXXXXXXXXXXXXXSALTLDQQQELGDYLGNFFVTVDQQ 66 MRS + +K Q LY +ALTL+QQQ+L + + V+ Sbjct: 1 MRSPAFQDAVKNQLTLYVFVAVLFVVGAIFGGLMVNALTLEQQQDLAADVNQYIRLVNDG 60 Query: 67 GLPAAPDSYWDIAALNLKWIALIWILGLSVIGLPGILILDFLKGVLIGFTVGCMVSEYSW 126 P A S+WD + KW+ L+W LG+SV+G+P +L LDFLKG L+GF VG ++S+++W Sbjct: 61 VTPDAAQSFWDSFIFHGKWLFLLWFLGISVVGIPFVLALDFLKGALVGFAVGSLISQHAW 120 Query: 127 HGMLFALVSVAPHNLVLIPVLLVGSAAAIAFSLLMIRSRVLGQRRSPVTRPFVMYTVLSF 186 G++F+L SVAP NL+++P +++ S AAI FS +I++R+L Q++ + +T + Sbjct: 121 KGVMFSLASVAPPNLIVVPAIMITSVAAITFSTYVIKNRLL-QQKGTLAPQIAAFTSTAL 179 Query: 187 GLAVLVLGISGFEAWVTPTMMRWVTPLL 214 + +L+ G S EA+++P M+W P L Sbjct: 180 LMLLLLAGASLLEAYLSPYFMQWAAPYL 207 >B4BLA7.1 B4BLA7_9BACI Stage II sporulation protein M Length = 220 Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 76/212 (35%), Positives = 122/212 (57%), Gaps = 5/212 (2%) Query: 8 PMRS-LRLMMKEQTPLYXXXXXXXXXXXXXXXXXXSALTLDQQQELGDYLGNFFVTVDQQ 66 P++S + + ++E LY ++L Q+Q+L YL FF V + Sbjct: 5 PLKSAIAVHLREHASLYVFVIVLFLMGVIFGAIVVNSLGFSQKQDLYYYLTQFFGQVSKD 64 Query: 67 GLPAAPDSYWDIAALNLKWIALIWILGLSVIGLPGILILDFLKGVLIGFTVGCMVSEYSW 126 L +A D + N+K+IAL+W+LG+SVIGLP I IL FLKG+++GFTVG +V++ SW Sbjct: 65 NLASAHDMFRQSYMHNVKYIALMWVLGISVIGLPIIFILLFLKGIVVGFTVGFLVNQMSW 124 Query: 127 HGMLFALVSVAPHNLVLIPVLLVGSAAAIAFSLLMIRSRVLGQRRSPVTRPFVMYTVLSF 186 G L + VSV P NL++IP+++V +I+FSL M+R++ + + PV + Y Sbjct: 125 QGFLLSFVSVMPQNLIVIPLMIVMGVISISFSLQMVRNQFMKRPHEPVFPMIMRYAAAMV 184 Query: 187 GLAVLVLGISGFEAWVTPTMM----RWVTPLL 214 +A +L S EA+++P +M +WV L+ Sbjct: 185 AIAAGLLVSSVVEAYLSPVLMKQTVKWVVNLI 216 >A4IQJ4.1 A4IQJ4_GEOTN Stage II sporulation protein M Length = 282 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/212 (35%), Positives = 122/212 (57%), Gaps = 5/212 (2%) Query: 8 PMRS-LRLMMKEQTPLYXXXXXXXXXXXXXXXXXXSALTLDQQQELGDYLGNFFVTVDQQ 66 P++S + + ++E LY ++L Q+Q+L YL FF V + Sbjct: 67 PLKSAIAVHLREHASLYVFVIVLFLMGVIFGAIVVNSLGFSQKQDLYYYLTQFFGQVSKD 126 Query: 67 GLPAAPDSYWDIAALNLKWIALIWILGLSVIGLPGILILDFLKGVLIGFTVGCMVSEYSW 126 L +A D + N+K+IAL+W+LG+SVIGLP I IL FLKG+++GFTVG +V++ SW Sbjct: 127 NLASAHDMFRQSYMHNVKYIALMWVLGISVIGLPIIFILLFLKGIVVGFTVGFLVNQMSW 186 Query: 127 HGMLFALVSVAPHNLVLIPVLLVGSAAAIAFSLLMIRSRVLGQRRSPVTRPFVMYTVLSF 186 G L + VSV P NL++IP+++V +I+FSL M+R++ + + PV + Y Sbjct: 187 QGFLLSFVSVMPQNLIVIPLMIVMGVISISFSLQMVRNQFMKRPHEPVFPMIMRYAAAMV 246 Query: 187 GLAVLVLGISGFEAWVTPTMM----RWVTPLL 214 +A +L S EA+++P +M +WV L+ Sbjct: 247 AIAAGLLVSSVVEAYLSPVLMKQTVKWVVNLI 278 >C0ZC46.1 C0ZC46_BREBN Stage II sporulation protein M Length = 208 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/195 (38%), Positives = 114/195 (58%), Gaps = 3/195 (1%) Query: 17 KEQTPLYXXXXXXXXXXXXXXXXXXSALTLDQQQELGDYLGNFFVTVDQQGLPAAPDSYW 76 KE LY ++L L Q+QEL +L FF ++ G+P + Sbjct: 14 KEHQSLYWFTIVLFTMGIIFGAVLVNSLPLSQKQELYGFLQYFFNSLGSDGIPETSAHFQ 73 Query: 77 DIAALNLKWIALIWILGLSVIGLPGILILDFLKGVLIGFTVGCMVSEYSWHGMLFALVSV 136 K IA++W+LGLS+IGLP IL++ FLKGV++GFTVG +VS+ W G+ FA+V V Sbjct: 74 QAFGHYAKTIAIMWVLGLSIIGLPMILLMLFLKGVVVGFTVGFLVSQLQWQGVTFAMVGV 133 Query: 137 APHNLVLIPVLLVGSAAAIAFSLLMIRSRVLGQRRSPVTRPFVMYTVLSFG-LAVLVLGI 195 P NL+++P L + + I+FSL +IR+RVL +R + F+ YTVL LAVL + Sbjct: 134 LPQNLLVVPALFIVGVSGISFSLRLIRTRVLS-KRDVIMPHFMGYTVLVLSMLAVLTIA- 191 Query: 196 SGFEAWVTPTMMRWV 210 + FE +++P +M+ V Sbjct: 192 ALFETFISPRLMQLV 206 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.141 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,207,124,299 Number of extensions: 46101120 Number of successful extensions: 179990 Number of sequences better than 1.0e-05: 154 Number of HSP's gapped: 179977 Number of HSP's successfully gapped: 154 Length of query: 218 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 88 Effective length of database: 1,835,964,253 Effective search space: 161564854264 Effective search space used: 161564854264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 128 (53.9 bits)