BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0386.0014.p (201 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KK74.1 B3KK74_9BACI NUDIX hydrolase 251 2e-65 B1DJD2.1 B1DJD2_9BACL NUDIX hydrolase 223 8e-57 C0ZC44.1 C0ZC44_BREBN ADP-ribose pyrophosphatase EC=3.6.1.13 196 1e-48 Q8KP10.1 Q8KP10_BACMT Methanol dehydrogenase activator protein 193 9e-48 Q92A43.1 Q92A43_LISIN Lin2079 protein 189 2e-46 >B3KK74.1 B3KK74_9BACI NUDIX hydrolase Length = 193 Score = 251 bits (641), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 121/177 (68%), Positives = 146/177 (82%) Query: 23 LDEETLSTKPIFVGKIISLQVDTVKLPDGNTATREVVKHPGAVAVLALNQGKMLVVEQYR 82 L+E TLST+ IF GKIISLQVDTV LPDG TATREVV+HPGAVAVLAL KML V Q+R Sbjct: 16 LEETTLSTQSIFEGKIISLQVDTVTLPDGQTATREVVRHPGAVAVLALKDDKMLAVNQFR 75 Query: 83 QPMHRTEVEIPAGKLDPGEDPLAAAGRELQEETGFHSGELKLLKSFYTSPGFADEIIHLY 142 QP+ R EVEIPAGKL+ GEDPL AA RELQEETG+ G ++ L SFYTSPGFADEIIHLY Sbjct: 76 QPLGRCEVEIPAGKLERGEDPLEAAKRELQEETGYTCGSIRKLHSFYTSPGFADEIIHLY 135 Query: 143 VTDNAQPGDMALDEDEFLEVSELTLEEAYQYIADGRIADAKTMMAVYAWHLFTLTGQ 199 + ++ GDM DEDEF+E+ E++LEEAY I + RI+DAKT++AVYAW++++LTG+ Sbjct: 136 LAEDLVGGDMNPDEDEFIEMMEISLEEAYSLIQEERISDAKTILAVYAWNMYSLTGK 192 >B1DJD2.1 B1DJD2_9BACL NUDIX hydrolase Length = 185 Score = 223 bits (568), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 112/180 (62%), Positives = 143/180 (79%) Query: 19 RNPALDEETLSTKPIFVGKIISLQVDTVKLPDGNTATREVVKHPGAVAVLALNQGKMLVV 78 N EET+ST+PIF GK+I+LQVDTV +PDG TATRE+VKHPGA AV+AL GK+LVV Sbjct: 4 NNELWREETISTQPIFEGKMITLQVDTVAMPDGRTATREIVKHPGAAAVMALLDGKLLVV 63 Query: 79 EQYRQPMHRTEVEIPAGKLDPGEDPLAAAGRELQEETGFHSGELKLLKSFYTSPGFADEI 138 EQ+R+P+ + ++EIPAGKLD GEDP+ AA REL+EETG+ S LKL+ F+TSPGFADE Sbjct: 64 EQFRKPLEKFQIEIPAGKLDAGEDPMEAAARELEEETGYRSDSLKLVSGFFTSPGFADEK 123 Query: 139 IHLYVTDNAQPGDMALDEDEFLEVSELTLEEAYQYIADGRIADAKTMMAVYAWHLFTLTG 198 ++LY +N G DEDE+L+V +TLE+A YIA+GRI+DAKT++AVYAW L+ LTG Sbjct: 124 LYLYFAENVTVGTQHTDEDEYLQVEAITLEQAEAYIAEGRISDAKTILAVYAWKLYQLTG 183 >C0ZC44.1 C0ZC44_BREBN ADP-ribose pyrophosphatase EC=3.6.1.13 Length = 185 Score = 196 bits (497), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 96/170 (56%), Positives = 131/170 (77%), Gaps = 1/170 (0%) Query: 23 LDEETLSTKPIFVGKIISLQVDTVKLPDGNTATREVVKHPGAVAVLAL-NQGKMLVVEQY 81 L E+T+S++PI+ G+II ++VD V LP+GNTA RE+V H GAVAVL + + KM+VV Q+ Sbjct: 7 LYEKTISSQPIYDGRIIKVKVDEVLLPNGNTAKREIVNHQGAVAVLPITDDNKMVVVRQF 66 Query: 82 RQPMHRTEVEIPAGKLDPGEDPLAAAGRELQEETGFHSGELKLLKSFYTSPGFADEIIHL 141 R+P+ RT VEIPAGKL+PGE+PLA A REL+EETG+ + + L SFYTSPGFADEI+H+ Sbjct: 67 RKPLERTIVEIPAGKLEPGEEPLACAIRELEEETGYVASQYTPLSSFYTSPGFADEILHV 126 Query: 142 YVTDNAQPGDMALDEDEFLEVSELTLEEAYQYIADGRIADAKTMMAVYAW 191 +V + G+ DEDEF++V E+TLEEA+ G I DAKT++A++AW Sbjct: 127 FVATGLKKGESKPDEDEFVDVLEVTLEEAHALHQSGEIRDAKTVVALFAW 176 >Q8KP10.1 Q8KP10_BACMT Methanol dehydrogenase activator protein Length = 185 Score = 193 bits (490), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 95/174 (54%), Positives = 132/174 (75%), Gaps = 3/174 (1%) Query: 23 LDEETLSTKPIFVGKIISLQVDTVKLPDGNTATREVVKHPGAVAVLAL-NQGKMLVVEQY 81 +E+T+ T+ IF G+++ LQVD V+LP+G T+ RE+V+HPGAVAV+A+ N+ K+++VEQY Sbjct: 5 FEEKTIKTEQIFSGRVVKLQVDDVELPNGQTSKREIVRHPGAVAVIAITNENKIVMVEQY 64 Query: 82 RQPMHRTEVEIPAGKLDPGEDPLAAAGRELQEETGFHSGELKLLKSFYTSPGFADEIIHL 141 R+P+ ++ VEIPAGKL+ GEDP A REL+EETG+ +++ L SF TSPGFADEIIHL Sbjct: 65 RKPLEKSIVEIPAGKLEKGEDPRVTALRELEEETGYECEQMEWLISFATSPGFADEIIHL 124 Query: 142 YVTDNAQPGDMA--LDEDEFLEVSELTLEEAYQYIADGRIADAKTMMAVYAWHL 193 YV + A LDEDEF+++ ELTL+EA QYI + RI D+KT++AV L Sbjct: 125 YVAKGLSKKENAAGLDEDEFVDLIELTLDEALQYIKEKRIYDSKTVIAVQYLQL 178 >Q92A43.1 Q92A43_LISIN Lin2079 protein Length = 185 Score = 189 bits (479), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 92/175 (52%), Positives = 128/175 (73%), Gaps = 3/175 (1%) Query: 22 ALDEETLSTKPIFVGKIISLQVDTVKLPDGNTATREVVKHPGAVAVLALN-QGKMLVVEQ 80 +L+E+TL T+ IF G +I LQVD V+LP+G + RE+VKHPGAVA++ + G+M +VEQ Sbjct: 3 SLEEKTLHTEKIFSGNVIELQVDDVELPNGEKSKREIVKHPGAVAIIPFSADGRMYLVEQ 62 Query: 81 YRQPMHRTEVEIPAGKLDPGEDPLAAAGRELQEETGFHSGELKLLKSFYTSPGFADEIIH 140 +R+P+ + +EIPAGK++PGEDPL A REL+EETGF S +L L SFYTSPGFA E++H Sbjct: 63 FRKPLEKNIIEIPAGKMEPGEDPLVTAKRELEEETGFQSDDLTYLTSFYTSPGFASELLH 122 Query: 141 LYVTDNAQPGD--MALDEDEFLEVSELTLEEAYQYIADGRIADAKTMMAVYAWHL 193 +YV + + + +A D DEF+ + ++T+EEA Q IA I DAKTM A+ W L Sbjct: 123 IYVARDLRKMEHPLAQDADEFINLVKVTMEEAEQLIAQQFIHDAKTMYAIQYWKL 177 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.133 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,234,482,821 Number of extensions: 50422908 Number of successful extensions: 106394 Number of sequences better than 1.0e-05: 1847 Number of HSP's gapped: 104886 Number of HSP's successfully gapped: 1847 Length of query: 201 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 72 Effective length of database: 1,845,385,268 Effective search space: 132867739296 Effective search space used: 132867739296 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 128 (53.9 bits)