BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0386.0008.p
         (185 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KK68.1 B3KK68_9BACI Catalytic domain of component of various d...   129   2e-28
B1DJD6.1 B1DJD6_9BACL Catalytic domain of components of various ...   106   1e-21
C1PER4.1 C1PER4_BACCO Catalytic domain of components of various ...    94   7e-18
Q9K989.1 Q9K989_BACHD Branched-chain alpha-keto acid dehydrogena...    91   6e-17
A7Z6G6.1 A7Z6G6_BACA2 BkdB EC=2.3.1.-                                  90   9e-17

>B3KK68.1 B3KK68_9BACI Catalytic domain of component of various
          dehydrogenase complexes
          Length = 470

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 57/78 (73%), Positives = 73/78 (93%)

Query: 1  MSDNTKLTDVIMPQLAESLVSATIGKWLKQPGDAIEQYEPLCDLITDKVNAELPATVDGT 60
          MS+N KLTDV MPQLAESLVSATI KWLK+PGD+IEQYEP+C++ITDKVNAE+P+T+DG 
Sbjct: 1  MSENQKLTDVTMPQLAESLVSATIAKWLKKPGDSIEQYEPICEVITDKVNAEIPSTLDGV 60

Query: 61 LVELLAEEGQTVSVGEVI 78
          + ++LA+EGQTV+VG++I
Sbjct: 61 MGDILAQEGQTVNVGDII 78


>B1DJD6.1 B1DJD6_9BACL Catalytic domain of components of various
          dehydrogenase complexes
          Length = 436

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/67 (71%), Positives = 59/67 (88%)

Query: 9  DVIMPQLAESLVSATIGKWLKQPGDAIEQYEPLCDLITDKVNAELPATVDGTLVELLAEE 68
          ++++PQLAESLVSATI KWLKQPGD IE YEP+C+LITDKV+AELP+T+ GTLVE+L   
Sbjct: 6  EIVIPQLAESLVSATIDKWLKQPGDRIEMYEPICELITDKVSAELPSTIAGTLVEILVGN 65

Query: 69 GQTVSVG 75
          G+TV VG
Sbjct: 66 GETVPVG 72


>C1PER4.1 C1PER4_BACCO Catalytic domain of components of various
          dehydrogenase complexes
          Length = 425

 Score = 93.6 bits (231), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 57/72 (79%)

Query: 7  LTDVIMPQLAESLVSATIGKWLKQPGDAIEQYEPLCDLITDKVNAELPATVDGTLVELLA 66
          + ++ MPQL ES+   TI KWL  PGD + +Y+PLC+++TDKVNAE+P++ +G +VEL+A
Sbjct: 3  IENITMPQLGESVTEGTISKWLVSPGDHVHKYDPLCEVLTDKVNAEVPSSFEGEIVELIA 62

Query: 67 EEGQTVSVGEVI 78
           E +TV+VGEVI
Sbjct: 63 SEDETVAVGEVI 74


>Q9K989.1 Q9K989_BACHD Branched-chain alpha-keto acid dehydrogenase E2
          Length = 426

 Score = 90.5 bits (223), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 38/71 (53%), Positives = 55/71 (77%)

Query: 8  TDVIMPQLAESLVSATIGKWLKQPGDAIEQYEPLCDLITDKVNAELPATVDGTLVELLAE 67
          T++ MPQL ES+   TI +WL +PGD + +Y+PL +++TDKVNAE+P++  GT+ ELL E
Sbjct: 3  TEITMPQLGESVTEGTISRWLVKPGDKVNKYDPLAEVLTDKVNAEIPSSFSGTIQELLVE 62

Query: 68 EGQTVSVGEVI 78
          E +TV+VG VI
Sbjct: 63 EDETVAVGHVI 73


>A7Z6G6.1 A7Z6G6_BACA2 BkdB EC=2.3.1.-
          Length = 420

 Score = 89.7 bits (221), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 53/67 (79%)

Query: 12 MPQLAESLVSATIGKWLKQPGDAIEQYEPLCDLITDKVNAELPATVDGTLVELLAEEGQT 71
          MPQL ES+   TI KWL  PGD + +Y+P+ +++TDKVNAE+P++  GT+ EL+ EEGQT
Sbjct: 8  MPQLGESVTEGTISKWLVSPGDQVNKYDPIAEVMTDKVNAEVPSSFTGTIRELVGEEGQT 67

Query: 72 VSVGEVI 78
          ++VGE+I
Sbjct: 68 LAVGEII 74


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.131    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 680,373,368
Number of extensions: 19848922
Number of successful extensions: 64306
Number of sequences better than 1.0e-05: 1487
Number of HSP's gapped: 64198
Number of HSP's successfully gapped: 1647
Length of query: 185
Length of database: 3,060,696,203
Length adjustment: 127
Effective length of query: 58
Effective length of database: 1,864,227,298
Effective search space: 108125183284
Effective search space used: 108125183284
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)