BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0386.0007.p
         (71 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KK67.1 B3KK67_9BACI Transketolase central region                    102   8e-21
B1DJD7.1 B1DJD7_9BACL Transketolase central region                     91   4e-17
C0ZC38.1 C0ZC38_BREBN 2-oxoisovalerate dehydrogenase beta subuni...    89   1e-16
B7GHH8.1 B7GHH8_ANOFW Branched-chain alpha-keto acid dehydrogena...    84   5e-15
Q67ME7.1 Q67ME7_SYMTH Branched-chain alpha-keto acid dehydrogena...    81   3e-14

>B3KK67.1 B3KK67_9BACI Transketolase central region
          Length = 328

 Score =  102 bits (255), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 49/71 (69%), Positives = 53/71 (74%)

Query: 1   VLIVHEDNKTXXXXXXXXXXXXXHCLFELDAPIFRLCGPDVPAMPISPPMEKFFMLSKDK 60
           VLIVHEDNKT             HCL++LDAPI RLCGPDVPAMPISPPMEKFFML+KDK
Sbjct: 258 VLIVHEDNKTGGVGGEVSAIIAEHCLYDLDAPIMRLCGPDVPAMPISPPMEKFFMLNKDK 317

Query: 61  VKAEMLRLAQY 71
           VK  M +LA Y
Sbjct: 318 VKESMRQLALY 328


>B1DJD7.1 B1DJD7_9BACL Transketolase central region
          Length = 327

 Score = 90.5 bits (223), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 49/71 (69%)

Query: 1   VLIVHEDNKTXXXXXXXXXXXXXHCLFELDAPIFRLCGPDVPAMPISPPMEKFFMLSKDK 60
           VLI+HEDNKT               L+ELDAPI RLCGPDVPAMPI+PP EKFF+L+KDK
Sbjct: 257 VLIIHEDNKTGGVGAEVSAIIAEELLYELDAPIQRLCGPDVPAMPINPPGEKFFLLNKDK 316

Query: 61  VKAEMLRLAQY 71
           VK  M  LA Y
Sbjct: 317 VKEAMRNLALY 327


>C0ZC38.1 C0ZC38_BREBN 2-oxoisovalerate dehydrogenase beta subunit EC=1.2.4.4
          Length = 327

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/71 (60%), Positives = 48/71 (67%)

Query: 1   VLIVHEDNKTXXXXXXXXXXXXXHCLFELDAPIFRLCGPDVPAMPISPPMEKFFMLSKDK 60
           VLIVHEDNK              HCLF+LDAPI RLCGPDVPAMP SPPMEK+FML+ +K
Sbjct: 257 VLIVHEDNKEGGVGGEVAAIVAEHCLFDLDAPIKRLCGPDVPAMPYSPPMEKYFMLNPEK 316

Query: 61  VKAEMLRLAQY 71
           V   M  LA +
Sbjct: 317 VLEAMRELANF 327


>B7GHH8.1 B7GHH8_ANOFW Branched-chain alpha-keto acid dehydrogenase E1
           subunit (2-oxoisovalerate dehydrogenase beta subunit)
          Length = 327

 Score = 83.6 bits (205), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 40/71 (56%), Positives = 47/71 (66%)

Query: 1   VLIVHEDNKTXXXXXXXXXXXXXHCLFELDAPIFRLCGPDVPAMPISPPMEKFFMLSKDK 60
           VL+V EDNK              HCLF+LDAPI RL GPDVPAMP +P MEKFFM++ DK
Sbjct: 257 VLLVTEDNKEGSVMSEVAAIIAEHCLFDLDAPIMRLAGPDVPAMPYAPTMEKFFMVNPDK 316

Query: 61  VKAEMLRLAQY 71
           V+  M  LAQ+
Sbjct: 317 VEKAMRELAQF 327


>Q67ME7.1 Q67ME7_SYMTH Branched-chain alpha-keto acid dehydrogenase E1 beta
           subunit
          Length = 327

 Score = 81.3 bits (199), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/71 (56%), Positives = 45/71 (63%)

Query: 1   VLIVHEDNKTXXXXXXXXXXXXXHCLFELDAPIFRLCGPDVPAMPISPPMEKFFMLSKDK 60
           VLI HE  KT              CLF+LDAPI RLCGPDVPAMP + PMEKF+MLS +K
Sbjct: 257 VLIAHEAGKTHGVGAEVAAIIAEECLFDLDAPIKRLCGPDVPAMPYAGPMEKFYMLSTEK 316

Query: 61  VKAEMLRLAQY 71
             A M  LAQ+
Sbjct: 317 CLAAMRELAQF 327


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.327    0.142    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 324,670,966
Number of extensions: 8094492
Number of successful extensions: 18421
Number of sequences better than 1.0e-05: 151
Number of HSP's gapped: 18429
Number of HSP's successfully gapped: 151
Length of query: 71
Length of database: 3,060,696,203
Length adjustment: 42
Effective length of query: 29
Effective length of database: 2,665,013,573
Effective search space: 77285393617
Effective search space used: 77285393617
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 126 (53.1 bits)