BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0385.0017.p (505 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K5P3.1 B3K5P3_9BACI Response regulator receiver 640 0.0 B1D7Q5.1 B1D7Q5_9BACL Two component transcriptional regulator, A... 509 e-142 B3KEQ5.1 B3KEQ5_9BACI Response regulator receiver 417 e-114 B1D5Y1.1 B1D5Y1_9BACL Two component transcriptional regulator, A... 236 4e-60 Q2RGN4.1 Q2RGN4_MOOTA Two component transcriptional regulator, A... 231 1e-58 >B3K5P3.1 B3K5P3_9BACI Response regulator receiver Length = 548 Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust. Identities = 303/505 (60%), Positives = 397/505 (78%) Query: 1 VAGTALDGEEGLQMVREMKPDIVLTDIRMPRMDGLEMTRAILEFAPHCKIIILSAYSEFS 60 V GTALDGEEG+++V+E KPDIVLTDIRMP+ DGL MT+ ILE +P+ KI+ILSAY++FS Sbjct: 36 VVGTALDGEEGIRLVKETKPDIVLTDIRMPKKDGLAMTQEILESSPYTKIVILSAYTDFS 95 Query: 61 YAQQAIRLGAMDFVKKPFSLEEIVNVVLKAKALCLQEREEQEKIMAMQAQIKESLPILRQ 120 + +QAIRLGA DFVKKPFS++EI+ VVLKAKA L+E +EQ K++ ++ + +SLP+L+Q Sbjct: 96 FTRQAIRLGAFDFVKKPFSIDEIIQVVLKAKAAYLEELQEQSKVLELKQNMIKSLPVLQQ 155 Query: 121 EYLTFLMQHRTTEPSAKARWEYLGIPLAQKNFTVFIVEIDHFAEKYGRQPVQEIELIRFS 180 EYL+ L+ HRT +A +W+ LGI L + F +FIVE+D F +KY QP +E+ELIRFS Sbjct: 156 EYLSLLIHHRTNPEAAYQQWQALGIKLEPRRFNLFIVEVDRFMDKYKEQPAREVELIRFS 215 Query: 181 LQNILEETIHAWTQGVIFREATNRYVCIINGGDPHAAGLITEACCANVSRYSRCTVSIGV 240 L+NILEETI T GV+F EA NR +C+IN D A I+EAC N+ +++ T+SIG+ Sbjct: 216 LRNILEETIGGVTHGVVFSEALNRLICLINCEDMGMAEQISEACRQNIFQFTHSTISIGI 275 Query: 241 GLCVAAIHELADSYAQALSALAYHFYTGGNAVYSYASIVHKPRAASHYSVTAEQEFLFAL 300 G+CV +I EL DSY QAL+AL YHFYT GN V SY+ + + +Y+ + EQEFLFAL Sbjct: 276 GMCVHSIDELPDSYQQALNALDYHFYTDGNGVSSYSGTSAEEKTLLNYTASTEQEFLFAL 335 Query: 301 RSGNREKSRLVLQQIFDELLQLDPLPAPQYVENIGYELSFKICRVMLELFPYEKVQPLEQ 360 RSG+REK +L+L+QIF++LLQ DPLP PQ+VEN+ YELS KICRVM ELFP+E+V+ LE Sbjct: 336 RSGHREKCQLILEQIFNDLLQRDPLPKPQHVENLCYELSSKICRVMSELFPHERVKRLEG 395 Query: 361 QVNQLKNRLHPSLQEIRSLLEGLCAEACRWIEEERSVESTRIIQQAKAYICANLHTSLTL 420 Q N +K+ H S Q +R ++G+C EAC W+E+ERS EST++I QAK YICA+LHT+L+L Sbjct: 396 QWNTVKSSGHGSFQIMRDTVKGICLEACSWVEQERSDESTKLIYQAKDYICAHLHTNLSL 455 Query: 421 EQVAKQISLSQGYFSNLFKKVSGISFQQFVMHEKMEKAKTMLIEGMQVQEIAMELGYEHR 480 + AKQ ++S GYFSNLFKKV ISFQQFV+H++MEKAK MLI+ QVQEIA +LGYEHR Sbjct: 456 DTCAKQFNISPGYFSNLFKKVLNISFQQFVIHQRMEKAKEMLIDDYQVQEIAQKLGYEHR 515 Query: 481 RYFSEVFKKYTDMTPSEFKISYLGR 505 RYFSE+FKK+T+MTPSEFK+ G+ Sbjct: 516 RYFSEIFKKHTNMTPSEFKLYSTGK 540 >B1D7Q5.1 B1D7Q5_9BACL Two component transcriptional regulator, AraC family Length = 530 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 250/502 (49%), Positives = 347/502 (69%) Query: 1 VAGTALDGEEGLQMVREMKPDIVLTDIRMPRMDGLEMTRAILEFAPHCKIIILSAYSEFS 60 + GTALDG+EGL+M E+ PDI+LTDIRMP MDGLE+TR I+E +P CK+I+LS Y+EFS Sbjct: 27 IIGTALDGDEGLKMALELNPDILLTDIRMPVMDGLELTRRIIEKSPACKVILLSGYTEFS 86 Query: 61 YAQQAIRLGAMDFVKKPFSLEEIVNVVLKAKALCLQEREEQEKIMAMQAQIKESLPILRQ 120 YAQQAIR GA DFV KPFS+E+I+ VVLKA ER + ++I M+A+++ES P+LRQ Sbjct: 87 YAQQAIRYGAFDFVAKPFSMEDIIEVVLKATEEIELERSKHKRIYEMEARVRESKPLLRQ 146 Query: 121 EYLTFLMQHRTTEPSAKARWEYLGIPLAQKNFTVFIVEIDHFAEKYGRQPVQEIELIRFS 180 EY L+++ ++E SA+A+W++L I L ++ F V + EID F++ P+ E+EL R++ Sbjct: 147 EYFNLLIRYSSSEESARAKWDFLEIDLKREGFVVMVAEIDRFSKTIQTLPIGEVELTRYA 206 Query: 181 LQNILEETIHAWTQGVIFREATNRYVCIINGGDPHAAGLITEACCANVSRYSRCTVSIGV 240 LQNILEETI+ +TQGV+FRE+ NR V I N D +G + E CC N + YSR TVSIGV Sbjct: 207 LQNILEETINEYTQGVVFRESMNRLVIIYNSTDQIESGALAEICCNNCALYSRHTVSIGV 266 Query: 241 GLCVAAIHELADSYAQALSALAYHFYTGGNAVYSYASIVHKPRAASHYSVTAEQEFLFAL 300 L I E+ Y QA+SAL+Y+FYTGGN + Y + YS+ E+E LFA+ Sbjct: 267 SLSTNLISEIHLGYQQAISALSYNFYTGGNGAFRYGDFGQMSQHLRTYSLDQEKELLFAV 326 Query: 301 RSGNREKSRLVLQQIFDELLQLDPLPAPQYVENIGYELSFKICRVMLELFPYEKVQPLEQ 360 RSGN+E + VLQQI+++ ++ PLP PQY+ + EL + + RV+ E E +Q L+ Sbjct: 327 RSGNQEAALGVLQQIYEDCAKIQPLPNPQYLITMYDELVYMVLRVLEEKLHKEDLQELKA 386 Query: 361 QVNQLKNRLHPSLQEIRSLLEGLCAEACRWIEEERSVESTRIIQQAKAYICANLHTSLTL 420 ++ K SL E++ LE LC C ++ R+ E+ RII +A Y+ NLH L++ Sbjct: 387 EIEAHKKTDRMSLLELQKSLEQLCMNGCVLQDKHRTTEAERIIHRAIEYMKGNLHLDLSV 446 Query: 421 EQVAKQISLSQGYFSNLFKKVSGISFQQFVMHEKMEKAKTMLIEGMQVQEIAMELGYEHR 480 + A + LS YFSNLFKKV+G +F QFV +E++++AK ML++G QVQE+A ++GYE R Sbjct: 447 NECATLVHLSSSYFSNLFKKVTGQTFLQFVTNERIDQAKLMLMKGHQVQEVAADIGYEDR 506 Query: 481 RYFSEVFKKYTDMTPSEFKISY 502 RYFSEVFKK T MTPSEFK +Y Sbjct: 507 RYFSEVFKKNTGMTPSEFKQAY 528 >B3KEQ5.1 B3KEQ5_9BACI Response regulator receiver Length = 541 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 206/502 (41%), Positives = 314/502 (62%), Gaps = 1/502 (0%) Query: 1 VAGTALDGEEGLQMVREMKPDIVLTDIRMPRMDGLEMTRAILEFAPHCKIIILSAYSEFS 60 VAG + +GEEGL+++ + PD+V+TDIRMP MDGL M R +LE P CK+I++S Y++F Sbjct: 34 VAGVSSNGEEGLKLISGLCPDLVITDIRMPIMDGLSMLRLVLEENPSCKVILISGYADFE 93 Query: 61 YAQQAIRLGAMDFVKKPFSLEEIVNVVLKAKALCLQEREEQEKIMAMQAQIKESLPILRQ 120 YAQQA++LGA DFV KPF+ E++++ VL+AKA ++ER ++ + M+ +++ES+P LRQ Sbjct: 94 YAQQAVQLGAFDFVVKPFTEEDMMSAVLRAKAEVMEERSKRISLREMENKLRESMPALRQ 153 Query: 121 EYLTFLMQHRTTEPSAKARWEYLGIPLAQKNFTVFIVEIDHFAEKYGRQPVQEIELIRFS 180 EY L+ HRT+ A RW++L I L + F V ++EID F E+ Q V+E+ELIRFS Sbjct: 154 EYFGLLVSHRTSWEEASERWDFLNIELEPRGFVVMLIEIDRFREQVAEQSVKEMELIRFS 213 Query: 181 LQNILEETIHAWTQGVIFREATNRYVCIINGGDPHAAGLITEACCANVSRYSRCTVSIGV 240 L NI++ET+ + V+FR ++Y+ ++N P + I E CC N+ RY++ T+S+GV Sbjct: 214 LLNIMQETLAHYAHSVLFRARHDQYLAVLNDSGPSSPIEIAEQCCRNIERYTKFTISVGV 273 Query: 241 GLCVAAIHELADSYAQALSALAYHFYTGGNAVYSYASIVHKPRAASHYSVTAEQEFLFAL 300 G V I L DSY QA AL++H +T GNA Y I H+ + ++ + E L AL Sbjct: 274 GGRVEEISGLPDSYRQAHRALSHHLFTEGNAAIMYDDI-HQSGSQEPLALEYKDELLLAL 332 Query: 301 RSGNREKSRLVLQQIFDELLQLDPLPAPQYVENIGYELSFKICRVMLELFPYEKVQPLEQ 360 RSGN ++ +L I + L + +P Y+ ++ EL+ R + E+ Y ++QP+ Q Sbjct: 333 RSGNAARTDEILSAISEALQKRISRQSPDYLLSLYDELAASAIRTLYEMVTYSEIQPMIQ 392 Query: 361 QVNQLKNRLHPSLQEIRSLLEGLCAEACRWIEEERSVESTRIIQQAKAYICANLHTSLTL 420 + ++ L ++ L LC E + E ++I A YI L +T+ Sbjct: 393 KFRTVQGTAGLPLASLQRQLHALCTEGAELVRRNSLSEGQKVIYNAIGYIKGRLSEDITV 452 Query: 421 EQVAKQISLSQGYFSNLFKKVSGISFQQFVMHEKMEKAKTMLIEGMQVQEIAMELGYEHR 480 + A + LS YFS+LFK+V+G++ QF+ E++ KA+ +L+EG QVQE+A +GYE R Sbjct: 453 GECAAHVHLSASYFSSLFKQVTGMTVTQFITSERIHKARLLLVEGAQVQEVAAAVGYEER 512 Query: 481 RYFSEVFKKYTDMTPSEFKISY 502 RYFSE+FKK T TPSEF+ Y Sbjct: 513 RYFSEMFKKITGQTPSEFRAGY 534 >B1D5Y1.1 B1D5Y1_9BACL Two component transcriptional regulator, AraC family Length = 545 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 152/519 (29%), Positives = 280/519 (53%), Gaps = 19/519 (3%) Query: 1 VAGTALDGEEGLQMVREMKPDIVLTDIRMPRMDGLEMTRAILEFAPHCKIIILSAYSEFS 60 + G A DG+ +M+ PD+VLTD+RMP MDG+ + R I E PH KII +S + + Sbjct: 30 IMGEADDGDVAFEMIGREAPDLVLTDVRMPNMDGITLARLINEHYPHVKIIFVSGHDDAD 89 Query: 61 YAQQAIRLGAMDFVKKPFSLEEIVNVVLKAKALCLQEREEQEKIMAMQAQIKESLPILRQ 120 Y + A++L A+D++ KP +LEE+ +V+ + ++R EQ++ +Q ++KE +P+LR+ Sbjct: 90 YLKSAMKLSAVDYIFKPVNLEELSSVLRHVVSDLDEQRAEQQRKEELQVRLKEGMPVLRE 149 Query: 121 EYLTFLMQHRTTEPSAKARWEYLGIPLAQK-NFTVFIVEIDHFAEKYGRQPVQEIELIRF 179 ++L LM + R ++L + L ++ ++ V ++ +D E + ++ +L+ + Sbjct: 150 KFLLSLMGSGVQRQDIRERVQFLELSLPEEASYWVIVISVDDLPEVMSTRSERDRQLLWY 209 Query: 180 SLQNILEETIHAWTQGVIFREATNRYVCIINGG------DPHAAGL--ITEACCANVSRY 231 S+ NI +E I + G +F T + I+ G A GL +T N+ R+ Sbjct: 210 SINNICQELIDSHMGGYVFEYQTGEFAGILRRGAESEVSGDAAEGLLELTSRIRDNLERW 269 Query: 232 SRCTVSIGVGLCVAAIHELADSYAQALSALAYHFYTGGNAVYSYASIVHKPRA---ASHY 288 + +V+IG+ V + L + Y QA A+ + +Y G N + + S+ +A A Y Sbjct: 270 LKISVTIGISDRVTGLGNLGNCYKQAREAVNHKWYLGKNRIITMDSLESSEQASLSAGRY 329 Query: 289 SVTAEQEFLFALRSGNREKSRLVLQQIFDELLQLDPLPAPQYVENIGYELSFKICRVMLE 348 ++E AL++ N EK R VL IF +L + P +Y N+ ++ +++LE Sbjct: 330 EFVYDEELTSALKAANPEKLREVLDAIFADLNRNRP-DGLKYGRNVCMQIFLAAGQLLLE 388 Query: 349 L-FPYEKVQPLEQQV-NQLKNRLHPSLQEIRSLLEGLCAEACRWIEEERSVESTRIIQQA 406 L E+++ E V L +R +L E+R +LE AC I E+R+ + ++++ Sbjct: 389 LNMQSEELESAEAAVWESLLDR--ETLGEMRLILEAYLLAACERIGEKRTGKVANLVERV 446 Query: 407 KAYICANL-HTSLTLEQVAKQISLSQGYFSNLFKKVSGISFQQFVMHEKMEKAKTMLIEG 465 +A I + + SLT+ + +++ L+ Y S L+K+ +G + +++ +MEKAK ML + Sbjct: 447 RAIIDRDYSNGSLTVTDIGREVFLTPTYVSLLYKQETGQTVGEYMTQVRMEKAKEMLRDP 506 Query: 466 M-QVQEIAMELGYEHRRYFSEVFKKYTDMTPSEFKISYL 503 + +I +GY YF+++FKK T +TPS ++ Y+ Sbjct: 507 QYKFYDICYAIGYTDPSYFTKLFKKMTGVTPSGYREKYV 545 >Q2RGN4.1 Q2RGN4_MOOTA Two component transcriptional regulator, AraC family Length = 548 Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 153/508 (30%), Positives = 264/508 (51%), Gaps = 13/508 (2%) Query: 1 VAGTALDGEEGLQMVREMKPDIVLTDIRMPRMDGLEMTRAILEFAPHCKIIILSAYSEFS 60 +AG A +G E +++ ++PDIV DI+MP MDGL R I P ++I ++AY EF Sbjct: 33 IAGEAGNGGEAVKLAARLRPDIVFLDIKMPVMDGLTAGREIRAILPEARLIFVTAYGEFD 92 Query: 61 YAQQAIRLGAMDFVKKPFSLEEIVNVVLKAKALCLQEREEQEKIMAMQAQIKESLPILRQ 120 YA++A+ LGA ++ KP + EE++ ++ + A R Q++ ++A ++E+ P +R Sbjct: 93 YAREAVALGASKYLLKPVAAEEMLPLLDELAAGVAAARRRQQETARLRAALEEAKPFIRL 152 Query: 121 EYLTFLMQHRTTEPSAKARWEYLGIPLAQKNFTVFIVEIDHFAEKYGRQPVQEIELIRFS 180 ++ L+ T+ A +R +LGI + +V+ID+FA E ++++ Sbjct: 153 GFIMDLINGNITDAEAVSRARFLGIATLPR--LAMLVDIDNFAALAREGTEVERQILKQQ 210 Query: 181 LQNILEETIHAWTQGVIFREATNRYVCII------NGGDPHAAGL-ITEACCANVSRYSR 233 ++ LE +W ++ + + ++ G D H A + + E C V R +R Sbjct: 211 VKESLERATVSWPGALVAPVTRDEFAILLPLDHLAPGADSHQAAIELGEGICRQVRRDTR 270 Query: 234 CTVSIGVGLCVAAIHELADSYAQALSALAYHFYTGGNAVYSYASIVHKPRAASHYSVTAE 293 TV++G+G VA + ELA SYA+A++A + + GG+ V ++ +P A E Sbjct: 271 ATVTVGIGRPVAKVAELARSYAEAVAAAEFRLFYGGDQVIHADDVIARPSAGQFLPAPEE 330 Query: 294 QEFLFALRSGNREKSRLVLQQIFDELLQLDPLPAPQYVENIGYELSFKICRVMLELFPYE 353 QE A+R G+R+ + + I +LL L+ P ++ EL+ R LE Sbjct: 331 QELTQAIRMGDRQAAYRQAKNILMQLL-LEQEKRPAILKMKLLELNTLAARAALEGGADP 389 Query: 354 KVQPLEQQVNQLKNRLHPSLQEIRS-LLEGLCAEACRWIEEERSVESTRIIQQAKAYICA 412 + + + +L ++R +LE L A + + E R ++ +I +A YI A Sbjct: 390 EAVSDLALASSTEFLTLDNLADMRERILERLMALVAQ-VAETREQRNSSLIDRASKYIEA 448 Query: 413 NLHTSLTLEQVAKQISLSQGYFSNLFKKVSGISFQQFVMHEKMEKAKTMLIEG-MQVQEI 471 N LTLE+VA+Q+ LS YFS LFK+ G++F ++ +++ A+ +L+ + V EI Sbjct: 449 NFSQDLTLEEVARQVYLSPCYFSKLFKQFKGLNFIDYLTKVRLKAARELLLNTKLPVAEI 508 Query: 472 AMELGYEHRRYFSEVFKKYTDMTPSEFK 499 A +GY RYF +VFKK TPS F+ Sbjct: 509 ATRVGYRDARYFGQVFKKQEGYTPSVFR 536 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.135 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,699,873,962 Number of extensions: 104044515 Number of successful extensions: 397055 Number of sequences better than 1.0e-05: 11625 Number of HSP's gapped: 412123 Number of HSP's successfully gapped: 12123 Length of query: 505 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 365 Effective length of database: 1,741,754,103 Effective search space: 635740247595 Effective search space used: 635740247595 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)