BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0385.0013.p (278 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K5P0.1 B3K5P0_9BACI Binding-protein-dependent transport system... 444 e-123 B1D7Q2.1 B1D7Q2_9BACL Binding-protein-dependent transport system... 375 e-102 B3KEQ8.1 B3KEQ8_9BACI Binding-protein-dependent transport system... 358 2e-97 B7XWV0.1 B7XWV0_RUMHA Putative uncharacterized protein 158 4e-37 Q2CEJ0.1 Q2CEJ0_9RHOB Sugar permease 153 2e-35 >B3K5P0.1 B3K5P0_9BACI Binding-protein-dependent transport systems inner membrane component Length = 275 Score = 444 bits (1141), Expect = e-123, Method: Compositional matrix adjust. Identities = 214/274 (78%), Positives = 238/274 (86%) Query: 5 EITGKTVLWIFLLAFAFITLIPVVITILGSFKTNSELTTGATFLPSKWHFSNYAEAWDQA 64 I T+LW FL+ AF+TL PVVIT+LGSFKTN+ELT GATFLP+ W FSNY EAW+QA Sbjct: 2 RIAWNTILWAFLIVVAFLTLFPVVITLLGSFKTNAELTAGATFLPADWQFSNYIEAWEQA 61 Query: 65 NFSTYTVNSLIVSLSTVAGTLLVASMAAYVVDRMDFFGKKIYVGIQSFTMFVAVGAVVLR 124 NFSTYT+NSL V+ + GTLLVASMAAYVV+RMDF GKK+YVG+Q+FTMFVA+GAVVLR Sbjct: 62 NFSTYTLNSLFVAGAATIGTLLVASMAAYVVNRMDFIGKKLYVGLQAFTMFVAIGAVVLR 121 Query: 125 PQFDLMVKLHLHSSLWGVILILISAHASIFFILLSFMRGIPRELDEAARIDGSSLGRTFW 184 PQFDLM++LHLH+SLWGVILILISAHAS FFILLSFM GIPRELDEAARIDG S GRTFW Sbjct: 122 PQFDLMIRLHLHNSLWGVILILISAHASAFFILLSFMNGIPRELDEAARIDGCSPGRTFW 181 Query: 185 TIIXXXXXXXXXXXALFTFRGAWNEYLLPLVFTMTKPELQTLTVGLANLKYGISAASQTH 244 II ALF FRGAWNEYLLP VFT++KPELQTLTVGLANLKYG++AASQTH Sbjct: 182 RIIIPLLTPGLGVCALFAFRGAWNEYLLPFVFTLSKPELQTLTVGLANLKYGVAAASQTH 241 Query: 245 YMMAGACLSILPILIAYVFANKSFMQMTAGSLKG 278 +MMAGACLSILPILIAY+FANKSFMQMTAGSLKG Sbjct: 242 FMMAGACLSILPILIAYIFANKSFMQMTAGSLKG 275 >B1D7Q2.1 B1D7Q2_9BACL Binding-protein-dependent transport systems inner membrane component Length = 294 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 180/277 (64%), Positives = 219/277 (79%) Query: 2 RTKEITGKTVLWIFLLAFAFITLIPVVITILGSFKTNSELTTGATFLPSKWHFSNYAEAW 61 R K I +LW+FL A T+ PV+ITI GSFKTN+ELT GAT LPS WHFSNY +AW Sbjct: 18 RAKRIFSGFILWVFLGIVAVFTVFPVLITIFGSFKTNAELTAGATILPSVWHFSNYYDAW 77 Query: 62 DQANFSTYTVNSLIVSLSTVAGTLLVASMAAYVVDRMDFFGKKIYVGIQSFTMFVAVGAV 121 QA+F+ +T NSL +S T GTLL+ASMAAYV+DR +FFGK IYV +Q+ TMF+++GAV Sbjct: 78 KQADFAKFTWNSLFISTITTIGTLLLASMAAYVIDRRNFFGKSIYVSLQAATMFISIGAV 137 Query: 122 VLRPQFDLMVKLHLHSSLWGVILILISAHASIFFILLSFMRGIPRELDEAARIDGSSLGR 181 V+RPQF+LMVKLHL+SSLWG+I IL+SAHA+ FFIL+ F +GIPR+LDEAA IDG + Sbjct: 138 VIRPQFELMVKLHLNSSLWGIIFILMSAHATTFFILIGFFKGIPRDLDEAAHIDGCNFFS 197 Query: 182 TFWTIIXXXXXXXXXXXALFTFRGAWNEYLLPLVFTMTKPELQTLTVGLANLKYGISAAS 241 +W I+ ALF FR AWNEY+LPLVFTMT P+LQTLTVGLA+L+YG +AA+ Sbjct: 198 VYWRIVLPLLKPGLGVAALFAFRNAWNEYILPLVFTMTNPKLQTLTVGLADLRYGTTAAT 257 Query: 242 QTHYMMAGACLSILPILIAYVFANKSFMQMTAGSLKG 278 QTH +MAGACLSILPILI YVFANKSFMQ+T GS+KG Sbjct: 258 QTHLIMAGACLSILPILIVYVFANKSFMQVTGGSVKG 294 >B3KEQ8.1 B3KEQ8_9BACI Binding-protein-dependent transport systems inner membrane component Length = 300 Score = 358 bits (920), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 176/277 (63%), Positives = 214/277 (77%) Query: 2 RTKEITGKTVLWIFLLAFAFITLIPVVITILGSFKTNSELTTGATFLPSKWHFSNYAEAW 61 T I G+TV+W+FLL A +TL P+++T+ GS KT +E+ TG + LP+K F NYAEAW Sbjct: 24 HTGRIVGRTVMWLFLLITAILTLFPLLMTLSGSLKTGAEMMTGGSLLPAKLQFVNYAEAW 83 Query: 62 DQANFSTYTVNSLIVSLSTVAGTLLVASMAAYVVDRMDFFGKKIYVGIQSFTMFVAVGAV 121 QANF+ YT NS VS+ AGTLLVA+MAAYVVDR F GK +YV Q+ MF++VGA+ Sbjct: 84 KQANFARYTWNSAFVSIMVTAGTLLVAAMAAYVVDRRHFPGKSLYVTTQASMMFISVGAI 143 Query: 122 VLRPQFDLMVKLHLHSSLWGVILILISAHASIFFILLSFMRGIPRELDEAARIDGSSLGR 181 VLRPQFDLMV L+L+++LWGVILILISAH+S FF+LL F + IPRELDEAA +DGS R Sbjct: 144 VLRPQFDLMVALNLNTTLWGVILILISAHSSTFFMLLGFFKAIPRELDEAAMVDGSGFVR 203 Query: 182 TFWTIIXXXXXXXXXXXALFTFRGAWNEYLLPLVFTMTKPELQTLTVGLANLKYGISAAS 241 TF+ II LF FR AWNEY+LPLVFTMT P+LQTLTVGLANL+YG SAA Sbjct: 204 TFFRIILPLLTPGLGVAGLFAFRHAWNEYILPLVFTMTNPQLQTLTVGLANLRYGSSAAM 263 Query: 242 QTHYMMAGACLSILPILIAYVFANKSFMQMTAGSLKG 278 Q H MMAGACLSILP+L+AY+ ANKSF+Q+TAGS+KG Sbjct: 264 QIHLMMAGACLSILPMLLAYIVANKSFIQVTAGSVKG 300 >B7XWV0.1 B7XWV0_RUMHA Putative uncharacterized protein Length = 280 Score = 158 bits (400), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 101/272 (37%), Positives = 158/272 (58%), Gaps = 5/272 (1%) Query: 8 GKTVLWIFLLAFAFITLIPVVITILGSFKTNSEL-TTGATFLPSKWHFSNYAEAWDQANF 66 GK++++I L AF+ + P + I S KT E +G + +P +F NY AW+ ANF Sbjct: 11 GKSIIYILLAVVAFVWVYPFIWMITASLKTQDEFFASGLSLIPKSLNFENYVRAWNNANF 70 Query: 67 STYTVNSLIVSLSTVAGTLLVASMAAYVVDRMDFFGKKIYVGIQSFTMFVAVGAVVLRPQ 126 Y NS+IV++S V LL S A YV+ R F GKK+ +GI ++ + + V+ P Sbjct: 71 GVYFKNSIIVTVSVVVIVLLATSAAGYVMGRYAFVGKKLIMGIFMASITIPLVFTVI-PI 129 Query: 127 FDLMVKLHLHSSLWGVILILISAHASIFFILLS-FMRGIPRELDEAARIDGSSLGRTFWT 185 ++L+ ++ L S+L G+IL IF +L S F G+P+EL+EAA IDGS +T+ + Sbjct: 130 YELLKEMGLESNLLGLILAEAGGGHVIFLMLFSSFYGGLPKELEEAATIDGSGFMKTYTS 189 Query: 186 IIXXXXXXXXXXXALFTFRGAWNEYLLPLVFTMTKPELQTLTVGLANLKYGISAASQTHY 245 I+ + F WN +LLPL+ T++KPEL+TL VGL L+ G + T Sbjct: 190 IMFPLAKPIMATVVIMQFIWTWNSFLLPLIVTLSKPELRTLAVGLYALR-GENVVDWTG- 247 Query: 246 MMAGACLSILPILIAYVFANKSFMQMTAGSLK 277 + AGAC+++LPI+I ++ + F+ AG++K Sbjct: 248 IAAGACIAVLPIIIIFICLQRYFVDGVAGAVK 279 >Q2CEJ0.1 Q2CEJ0_9RHOB Sugar permease Length = 294 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 89/276 (32%), Positives = 150/276 (54%), Gaps = 14/276 (5%) Query: 9 KTVLWIFLLAFAFITLIPVVITILGSFKTNSELTTGATFLPSKWHFSNYAEAWDQANFST 68 +T++ I L A + + P+V I SFKTN E+ + +P F NY AW +AN Sbjct: 27 RTLVSIVLAAICAVWVYPIVWMISASFKTNGEIFADSGLIPDAPTFDNYTRAWREANIGQ 86 Query: 69 YTVNSLIVSLSTVAGTLLVASMAAYVVDRMDFFGKKIYVGIQSFTMFVAVGAVVLRPQFD 128 Y N+L V++ +V T + A++ YV+ R GK +G+ FT+F+ G ++ P F+ Sbjct: 87 YFFNTLFVTVGSVIITTIAAALMGYVLGRRPIPGKTALMGLMVFTLFIPQGFTII-PVFE 145 Query: 129 LMVKLHLHSSLWGVILILISAHASIF-FILLSFMRGIPRELDEAARIDGSSLGRTFWTII 187 L+ + L SLWGV+L IF F+ + +P+EL+EA+R+DG +TFW ++ Sbjct: 146 LLTSVGLGQSLWGVMLATCGHSIVIFTFLFAGYFGQMPKELEEASRMDGVGPLKTFWYVM 205 Query: 188 XXXXXXXXXXXALFTFRGAWNEYLLPLVFTMTKPELQTLTVGLANLKYGISAASQTHY-- 245 + AWN++LLPLV T+ P+L+TL+VG+ + + H+ Sbjct: 206 LPLSKPIIVTVIVMQTLQAWNDFLLPLVVTLANPDLRTLSVGVYSFR-------GEHFID 258 Query: 246 ---MMAGACLSILPILIAYVFANKSFMQMTAGSLKG 278 M A + ++I+PI++ ++F + F+ AG++KG Sbjct: 259 WGGMTAASAITIIPIILLFLFLQRYFIDGLAGAVKG 294 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.138 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,418,914,896 Number of extensions: 51208515 Number of successful extensions: 237818 Number of sequences better than 1.0e-05: 5607 Number of HSP's gapped: 228463 Number of HSP's successfully gapped: 5609 Length of query: 278 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 144 Effective length of database: 1,798,280,193 Effective search space: 258952347792 Effective search space used: 258952347792 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)