BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0385.0008.p (517 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KEQ5.1 B3KEQ5_9BACI Response regulator receiver 869 0.0 B1D7Q5.1 B1D7Q5_9BACL Two component transcriptional regulator, A... 459 e-127 B3K5P3.1 B3K5P3_9BACI Response regulator receiver 384 e-104 C0D1A3.1 C0D1A3_9CLOT Putative uncharacterized protein 214 2e-53 A4XHB8.1 A4XHB8_CALS8 Two component transcriptional regulator, A... 199 7e-49 >B3KEQ5.1 B3KEQ5_9BACI Response regulator receiver Length = 541 Score = 869 bits (2245), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/516 (81%), Positives = 459/516 (88%) Query: 1 MSWEDQGIQVAGVSGNGEEGLKLITEVRPDLVITDIRMPRMDGLSMLRAVLEDNRSCKVI 60 M+WE+QGI+VAGVS NGEEGLKLI+ + PDLVITDIRMP MDGLSMLR VLE+N SCKVI Sbjct: 25 MNWEEQGIRVAGVSSNGEEGLKLISGLCPDLVITDIRMPIMDGLSMLRLVLEENPSCKVI 84 Query: 61 LISGYADFEYAQQAVQLGAFDFVVKPFSEEDIMAAVLRAKAEIXXXXXXXXXXXXMEIKL 120 LISGYADFEYAQQAVQLGAFDFVVKPF+EED+M+AVLRAKAE+ ME KL Sbjct: 85 LISGYADFEYAQQAVQLGAFDFVVKPFTEEDMMSAVLRAKAEVMEERSKRISLREMENKL 144 Query: 121 RESMPVLRQEYFTLLVSHRTSWEQAAGRWEFLNIELNPRGFVVMLIEIDRFQEQVAELSI 180 RESMP LRQEYF LLVSHRTSWE+A+ RW+FLNIEL PRGFVVMLIEIDRF+EQVAE S+ Sbjct: 145 RESMPALRQEYFGLLVSHRTSWEEASERWDFLNIELEPRGFVVMLIEIDRFREQVAEQSV 204 Query: 181 REVELIRFSLLNITQETIAEYAGCAVFRARHNRYLAVMNDTGPVSPIEIAEQCCRNIERY 240 +E+ELIRFSLLNI QET+A YA +FRARH++YLAV+ND+GP SPIEIAEQCCRNIERY Sbjct: 205 KEMELIRFSLLNIMQETLAHYAHSVLFRARHDQYLAVLNDSGPSSPIEIAEQCCRNIERY 264 Query: 241 TKFTVSVGVGGRVEETSELPDSYRQAHRALAHHLFTEGNAAIMYDDLHQTGSQEPLALEY 300 TKFT+SVGVGGRVEE S LPDSYRQAHRAL+HHLFTEGNAAIMYDD+HQ+GSQEPLALEY Sbjct: 265 TKFTISVGVGGRVEEISGLPDSYRQAHRALSHHLFTEGNAAIMYDDIHQSGSQEPLALEY 324 Query: 301 KDELLLALRSGNAGRADAILSAIAETLHPLISRQNPDYLLSLYDELAASAIRTFYELVPY 360 KDELLLALRSGNA R D ILSAI+E L ISRQ+PDYLLSLYDELAASAIRT YE+V Y Sbjct: 325 KDELLLALRSGNAARTDEILSAISEALQKRISRQSPDYLLSLYDELAASAIRTLYEMVTY 384 Query: 361 RDIQPLIQKFRAVXXXXGLPLASLQRQLLALCTEGAGLVRQNSLSEGQKVIYEAIDYIKS 420 +IQP+IQKFR V GLPLASLQRQL ALCTEGA LVR+NSLSEGQKVIY AI YIK Sbjct: 385 SEIQPMIQKFRTVQGTAGLPLASLQRQLHALCTEGAELVRRNSLSEGQKVIYNAIGYIKG 444 Query: 421 RLPEDITVGECAAHVHLSASYFSSLFKKVTGMTVTQFTTSERIQKAKALLVEGAQVQEVA 480 RL EDITVGECAAHVHLSASYFSSLFK+VTGMTVTQF TSERI KA+ LLVEGAQVQEVA Sbjct: 445 RLSEDITVGECAAHVHLSASYFSSLFKQVTGMTVTQFITSERIHKARLLLVEGAQVQEVA 504 Query: 481 SAVGYEERRYFSEMFKKITGQTPTEFRAGYHPDQPE 516 +AVGYEERRYFSEMFKKITGQTP+EFRAGYH D+PE Sbjct: 505 AAVGYEERRYFSEMFKKITGQTPSEFRAGYHMDRPE 540 >B1D7Q5.1 B1D7Q5_9BACL Two component transcriptional regulator, AraC family Length = 530 Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust. Identities = 233/510 (45%), Positives = 323/510 (63%), Gaps = 1/510 (0%) Query: 3 WEDQGIQVAGVSGNGEEGLKLITEVRPDLVITDIRMPRMDGLSMLRAVLEDNRSCKVILI 62 W + GI++ G + +G+EGLK+ E+ PD+++TDIRMP MDGL + R ++E + +CKVIL+ Sbjct: 20 WANYGIEIIGTALDGDEGLKMALELNPDILLTDIRMPVMDGLELTRRIIEKSPACKVILL 79 Query: 63 SGYADFEYAQQAVQLGAFDFVVKPFSEEDIMAAVLRAKAEIXXXXXXXXXXXXMEIKLRE 122 SGY +F YAQQA++ GAFDFV KPFS EDI+ VL+A EI ME ++RE Sbjct: 80 SGYTEFSYAQQAIRYGAFDFVAKPFSMEDIIEVVLKATEEIELERSKHKRIYEMEARVRE 139 Query: 123 SMPVLRQEYFTLLVSHRTSWEQAAGRWEFLNIELNPRGFVVMLIEIDRFQEQVAELSIRE 182 S P+LRQEYF LL+ + +S E A +W+FL I+L GFVVM+ EIDRF + + L I E Sbjct: 140 SKPLLRQEYFNLLIRYSSSEESARAKWDFLEIDLKREGFVVMVAEIDRFSKTIQTLPIGE 199 Query: 183 VELIRFSLLNITQETIAEYAGCAVFRARHNRYLAVMNDTGPVSPIEIAEQCCRNIERYTK 242 VEL R++L NI +ETI EY VFR NR + + N T + +AE CC N Y++ Sbjct: 200 VELTRYALQNILEETINEYTQGVVFRESMNRLVIIYNSTDQIESGALAEICCNNCALYSR 259 Query: 243 FTVSVGVGGRVEETSELPDSYRQAHRALAHHLFTEGNAAIMYDDLHQTGSQ-EPLALEYK 301 TVS+GV SE+ Y+QA AL+++ +T GN A Y D Q +L+ + Sbjct: 260 HTVSIGVSLSTNLISEIHLGYQQAISALSYNFYTGGNGAFRYGDFGQMSQHLRTYSLDQE 319 Query: 302 DELLLALRSGNAGRADAILSAIAETLHPLISRQNPDYLLSLYDELAASAIRTFYELVPYR 361 ELL A+RSGN A +L I E + NP YL+++YDEL +R E + Sbjct: 320 KELLFAVRSGNQEAALGVLQQIYEDCAKIQPLPNPQYLITMYDELVYMVLRVLEEKLHKE 379 Query: 362 DIQPLIQKFRAVXXXXGLPLASLQRQLLALCTEGAGLVRQNSLSEGQKVIYEAIDYIKSR 421 D+Q L + A + L LQ+ L LC G L ++ +E +++I+ AI+Y+K Sbjct: 380 DLQELKAEIEAHKKTDRMSLLELQKSLEQLCMNGCVLQDKHRTTEAERIIHRAIEYMKGN 439 Query: 422 LPEDITVGECAAHVHLSASYFSSLFKKVTGMTVTQFTTSERIQKAKALLVEGAQVQEVAS 481 L D++V ECA VHLS+SYFS+LFKKVTG T QF T+ERI +AK +L++G QVQEVA+ Sbjct: 440 LHLDLSVNECATLVHLSSSYFSNLFKKVTGQTFLQFVTNERIDQAKLMLMKGHQVQEVAA 499 Query: 482 AVGYEERRYFSEMFKKITGQTPTEFRAGYH 511 +GYE+RRYFSE+FKK TG TP+EF+ Y+ Sbjct: 500 DIGYEDRRYFSEVFKKNTGMTPSEFKQAYY 529 >B3K5P3.1 B3K5P3_9BACI Response regulator receiver Length = 548 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 202/511 (39%), Positives = 305/511 (59%), Gaps = 11/511 (2%) Query: 3 WEDQGIQVAGVSGNGEEGLKLITEVRPDLVITDIRMPRMDGLSMLRAVLEDNRSCKVILI 62 W+D I+V G + +GEEG++L+ E +PD+V+TDIRMP+ DGL+M + +LE + K++++ Sbjct: 29 WKDHHIEVVGTALDGEEGIRLVKETKPDIVLTDIRMPKKDGLAMTQEILESSPYTKIVIL 88 Query: 63 SGYADFEYAQQAVQLGAFDFVVKPFSEEDIMAAVLRAKAEIXXXXXXXXXXXXMEIKLRE 122 S Y DF + +QA++LGAFDFV KPFS ++I+ VL+AKA ++ + + Sbjct: 89 SAYTDFSFTRQAIRLGAFDFVKKPFSIDEIIQVVLKAKAAYLEELQEQSKVLELKQNMIK 148 Query: 123 SMPVLRQEYFTLLVSHRTSWEQAAGRWEFLNIELNPRGFVVMLIEIDRFQEQVAELSIRE 182 S+PVL+QEY +LL+ HRT+ E A +W+ L I+L PR F + ++E+DRF ++ E RE Sbjct: 149 SLPVLQQEYLSLLIHHRTNPEAAYQQWQALGIKLEPRRFNLFIVEVDRFMDKYKEQPARE 208 Query: 183 VELIRFSLLNITQETIAEYAGCAVFRARHNRYLAVMN--DTGPVSPIEIAEQCCRNIERY 240 VELIRFSL NI +ETI VF NR + ++N D G +I+E C +NI ++ Sbjct: 209 VELIRFSLRNILEETIGGVTHGVVFSEALNRLICLINCEDMGMAE--QISEACRQNIFQF 266 Query: 241 TKFTVSVGVGGRVEETSELPDSYRQAHRALAHHLFTEGNAAIMYDDLHQTGSQEPLALEY 300 T T+S+G+G V ELPDSY+QA AL +H +T+GN Y T ++E L Y Sbjct: 267 THSTISIGIGMCVHSIDELPDSYQQALNALDYHFYTDGNGVSSYSG---TSAEEKTLLNY 323 Query: 301 ----KDELLLALRSGNAGRADAILSAIAETLHPLISRQNPDYLLSLYDELAASAIRTFYE 356 + E L ALRSG+ + IL I L P ++ +L EL++ R E Sbjct: 324 TASTEQEFLFALRSGHREKCQLILEQIFNDLLQRDPLPKPQHVENLCYELSSKICRVMSE 383 Query: 357 LVPYRDIQPLIQKFRAVXXXXGLPLASLQRQLLALCTEGAGLVRQNSLSEGQKVIYEAID 416 L P+ ++ L ++ V ++ + +C E V Q E K+IY+A D Sbjct: 384 LFPHERVKRLEGQWNTVKSSGHGSFQIMRDTVKGICLEACSWVEQERSDESTKLIYQAKD 443 Query: 417 YIKSRLPEDITVGECAAHVHLSASYFSSLFKKVTGMTVTQFTTSERIQKAKALLVEGAQV 476 YI + L ++++ CA ++S YFS+LFKKV ++ QF +R++KAK +L++ QV Sbjct: 444 YICAHLHTNLSLDTCAKQFNISPGYFSNLFKKVLNISFQQFVIHQRMEKAKEMLIDDYQV 503 Query: 477 QEVASAVGYEERRYFSEMFKKITGQTPTEFR 507 QE+A +GYE RRYFSE+FKK T TP+EF+ Sbjct: 504 QEIAQKLGYEHRRYFSEIFKKHTNMTPSEFK 534 >C0D1A3.1 C0D1A3_9CLOT Putative uncharacterized protein Length = 556 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 154/531 (29%), Positives = 269/531 (50%), Gaps = 31/531 (5%) Query: 1 MSWEDQGIQVAGVSGNGEEGLKLITEVRPDLVITDIRMPRMDGLSMLRAVLEDNRSCKVI 60 + W G QV G + NGEE L+ I + PD+V+TDIRMP MDGL++ V + S K++ Sbjct: 34 IDWNAAGFQVVGDAENGEEALERIEALEPDVVLTDIRMPYMDGLTLAEKVRQRFPSTKIV 93 Query: 61 LISGYADFEYAQQAVQLGAFDFVVKPFSEEDIMAAVLRAKAEIXXXXXXXXXXXXMEIKL 120 + SGY DFEYA+QA++L ++++KP + E++ A + R KA + + Sbjct: 94 IFSGYDDFEYAKQAIKLNVTEYILKPVNVEELTAILKRIKANLDEEIEQKRNVSLLRENY 153 Query: 121 RESMPVLRQEYFTLLVSHRTSWEQAAGRWEFLNIEL-NPRGFVVMLIEIDRF-QEQVAEL 178 R+S+P+LR+++ L++ R S E AGR +I + + +V +I+I+ Q++ EL Sbjct: 154 RKSLPILREQFLNDLINRRVSGELLAGRLSEYDIPIAGAQKWVAAVIDIEPAEQKEGKEL 213 Query: 179 SI-REVELIRFSLLNITQETIAEYAGCAVFRAR------HNRYLAVMNDTGPVSPIEIAE 231 + +E +LI S++ I +E + +Y +F + A+ + I++ Sbjct: 214 PLHQEADLIPISVMQIVEEKLKDYCRFTLFTSNLGPESGMTVIAAIDRENTQTGLIDVLG 273 Query: 232 QCCRNIERYTKFTVSVGVGGRVEETSELPDSYRQAHRALAHHLFTEGNAAIMYDDLHQTG 291 C+ + + +++G+G R + + DSY+ A AL + + I +D+ + G Sbjct: 274 DICKETRKILEVPITIGIGHRCTDLVHISDSYKAAVDALGYKAIVGIGSTIYINDV-EPG 332 Query: 292 SQEPLALEYKDE--LLLALRSGNAGRADAILSAIAETLH--PLISRQNPDYLLS------ 341 LA + +DE L+ A++ G + +A + + + ++ + RQ+ Y+LS Sbjct: 333 DGGKLAFDSRDEADLIAAVKFGPQEKIEAAVRRVVDRMNDAKVHFRQHQAYMLSVANCIV 392 Query: 342 -LYDELAASAIRTFYELVPYRDIQPLIQKFRAVXXXXGLPLASLQRQLLALCTEGAGLVR 400 L + F E Y D +I K + L R A+ E R Sbjct: 393 QLIQQYDLDMAEMFGEGRDYADTFTVIPKMQKQEEFGQWLLPIALRMNQAMNQE-----R 447 Query: 401 QNSLSEGQKVIYEAIDYIKSRLPE-DITVGECAAHVHLSASYFSSLFKKVTGMTVTQFTT 459 N++ ++VI EA YI+ + D++V + H+H+S +YFS++FKK TG + T Sbjct: 448 DNTM---KQVIKEAKQYIQDNYQDPDLSVEKICRHLHMSPAYFSTMFKKETGQAYIAYLT 504 Query: 460 SERIQKAKALLVE-GAQVQEVASAVGYEERRYFSEMFKKITGQTPTEFRAG 509 R+ KA LL + + +A+ VGY+E+ YFS +FKK G +PT+FR Sbjct: 505 EVRLDKAVELLGKTDDKTYVIAAKVGYQEQNYFSYVFKKRFGVSPTKFRGA 555 >A4XHB8.1 A4XHB8_CALS8 Two component transcriptional regulator, AraC family Length = 546 Score = 199 bits (505), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 155/544 (28%), Positives = 267/544 (49%), Gaps = 67/544 (12%) Query: 1 MSWEDQGIQVAGVSGNGEEGLKLITEVRPDLVITDIRMPRMDGLSMLRAVLEDNRSCKVI 60 + W+D ++ + GEE L+LI + PD+VITDIRMP MDG+ ++ + CK+I Sbjct: 21 IRWKDFDCEICAEASTGEEALELIKKFTPDIVITDIRMPNMDGIELIERIKAILPQCKII 80 Query: 61 LISGYADFEYAQQAVQLGAFDFVVKPFSEEDIMAAVLRAKAEIXXXXXXXXXXXXMEIKL 120 +++ Y +FEYAQ+A++ GAFDF++KP EDI+ V +A AEI + L Sbjct: 81 ILTAYREFEYAQRAIKFGAFDFLLKPTKVEDIINVVQKAIAEINKEKTMIEELEKINRLL 140 Query: 121 RESMPVLRQEY-FTLLVSHRTSWEQAAGRWEFLNIELNPRGFVVMLIEIDRFQEQVAELS 179 +E +P+LR+ + F ++ T+ ++ E I++ + FV++L AE Sbjct: 141 QEKLPILRENFLFNVIFEMITNEDEIVQMAEVYKIDI--KNFVMIL----------AECG 188 Query: 180 IRE------VELIRFSLLNITQETIAEYAGCAVFRARHNRYLAVMNDTGPVSP------- 226 I+E L + NI + I + C+++ N AV + P Sbjct: 189 IKEENEKPNSHLYLLGVSNILNDFIDK--DCSIYTIYLNNSQAVYVVSFECEPSKKEELE 246 Query: 227 -IEIAEQC------CRNIERYTKFTVSVGVGGRVEETSELPDSYRQAHRALAHHLFTEGN 279 E+ +Q C NI+ T+ V G ELP+ +++ A+ + + + Sbjct: 247 FFELLKQLKKAAIECFNID----LTLVVSTWGY--GIVELPNKFKECIDAINYKFYFDNE 300 Query: 280 AAIMYDDL-HQTGSQEPLALEY-KDELLLALRSGNAGRADAILSAIAETLHPLISRQNPD 337 I Y DL H + L+Y K+E++ +R GN D +LS + ETL S+ + Sbjct: 301 DIIYYKDLSHLFVYVDDKKLKYLKNEIISNVRYGNISNIDILLSELEETLKK--SKADKQ 358 Query: 338 YLLSLY-------DELAASAIRT---FYELVPYRDIQPL--IQKFRAVXXXXGLPLASLQ 385 Y+ +LY + + A + + + + +DI+ L I K +++ G+ S+Q Sbjct: 359 YIFNLYYLMLIEINMIKAQVLSSSSQYEQEDKLQDIEFLSEILKCKSISELNGVLKMSIQ 418 Query: 386 RQLLALCTEGAGLVRQNSLSEGQKVIYEAIDYIKSRLP-EDITVGECAAHVHLSASYFSS 444 + + V++++ S+ +I + I+YIK+ +I++ E + +S SY S Sbjct: 419 KTIEE--------VQKHNQSKMGSLIKKVIEYIKANYSYNEISLSEISEKFFVSPSYLSR 470 Query: 445 LFKKVTGMTVTQFTTSERIQKAKALL-VEGAQVQEVASAVGYEERRYFSEMFKKITGQTP 503 LFKK TG ++ F RI+KAK LL + EVA VG + YFS +FK+ TG +P Sbjct: 471 LFKKETGKNLSDFINEYRIEKAKELLATTDLKTYEVADKVGIPDPHYFSRIFKRYTGYSP 530 Query: 504 TEFR 507 +E++ Sbjct: 531 SEYK 534 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,753,317,739 Number of extensions: 101906559 Number of successful extensions: 382316 Number of sequences better than 1.0e-05: 9888 Number of HSP's gapped: 397693 Number of HSP's successfully gapped: 10386 Length of query: 517 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 377 Effective length of database: 1,741,754,103 Effective search space: 656641296831 Effective search space used: 656641296831 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)