BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0385.0006.p (299 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KEQ7.1 B3KEQ7_9BACI Binding-protein-dependent transport system... 508 e-142 B1D7Q3.1 B1D7Q3_9BACL Binding-protein-dependent transport system... 363 1e-98 B3K5P1.1 B3K5P1_9BACI Binding-protein-dependent transport system... 341 4e-92 Q2BFH7.1 Q2BFH7_9BACI Sugar ABC transporter permease 157 9e-37 A4XHC7.1 A4XHC7_CALS8 Binding-protein-dependent transport system... 154 1e-35 >B3KEQ7.1 B3KEQ7_9BACI Binding-protein-dependent transport systems inner membrane component Length = 299 Score = 508 bits (1308), Expect = e-142, Method: Compositional matrix adjust. Identities = 255/299 (85%), Positives = 266/299 (88%) Query: 1 MSIKWKRLGENSLFLIPSIILTVALGIYPLFWMLRYMFYDYAGYGDALFVGLDNFRRLMR 60 MSIKWKRLGEN+LFL PSIILTVALGIYPL WMLRYMFYDYAGYGDALFVGLDNFRRLMR Sbjct: 1 MSIKWKRLGENALFLSPSIILTVALGIYPLLWMLRYMFYDYAGYGDALFVGLDNFRRLMR 60 Query: 61 DSLFWESVGNTFIFAGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXIYFMPTVISTAVISV 120 D+LFWESVGNTFI+AGGK IYFMPT+ISTAVISV Sbjct: 61 DALFWESVGNTFIYAGGKLLLTLPLSLLLAVILNGKLRGGNLLRGIYFMPTIISTAVISV 120 Query: 121 VFYNIFNSYNGMVNTVLMKLHLVSQPVDWLGPKHAMLTVILVAVWGAVGNYMLLFLAGLQ 180 VFY IFNSYNGMVNTVLMKLHLVSQP+DWLGP HAMLTVILVAVWGAVGNYMLLFLAGLQ Sbjct: 121 VFYTIFNSYNGMVNTVLMKLHLVSQPIDWLGPNHAMLTVILVAVWGAVGNYMLLFLAGLQ 180 Query: 181 SIPQDLYESAAIDGANAGRRFWNITLPMLAPVAQMVIMLAIIASLKGYESIMVITEGGPI 240 SIPQDLYESAA+DGANAGRRFW+ITLPMLAPVAQ+VIMLAIIASLKGYESIM+ITEGGPI Sbjct: 181 SIPQDLYESAAMDGANAGRRFWSITLPMLAPVAQLVIMLAIIASLKGYESIMLITEGGPI 240 Query: 241 GKTEVMYLYLYKLLFPVSTGSPVAQQLGYGSAVGFASAVIVGAITGLYFFLSRKMNKVY 299 GKTEVMYLYLYKLLFPVSTGSPV QQLGYGSAVGFA+AVIVGAITGLYF LSRKMNK+Y Sbjct: 241 GKTEVMYLYLYKLLFPVSTGSPVEQQLGYGSAVGFATAVIVGAITGLYFLLSRKMNKLY 299 >B1D7Q3.1 B1D7Q3_9BACL Binding-protein-dependent transport systems inner membrane component Length = 298 Score = 363 bits (931), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 172/294 (58%), Positives = 224/294 (76%) Query: 6 KRLGENSLFLIPSIILTVALGIYPLFWMLRYMFYDYAGYGDALFVGLDNFRRLMRDSLFW 65 ++LGE+ F++PS++ TV LGIYP+ W +RYMFYDY GYG+ +F+G NF LM D +W Sbjct: 5 RKLGESYSFILPSLVFTVVLGIYPILWAIRYMFYDYQGYGEEVFIGFGNFANLMSDGAYW 64 Query: 66 ESVGNTFIFAGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXIYFMPTVISTAVISVVFYNI 125 SV NT ++A GK IYFMPTV+STAVIS+VF+NI Sbjct: 65 SSVVNTAVYAMGKIIITIPLSLILAVILNKGLKGKNFLRAIYFMPTVLSTAVISIVFFNI 124 Query: 126 FNSYNGMVNTVLMKLHLVSQPVDWLGPKHAMLTVILVAVWGAVGNYMLLFLAGLQSIPQD 185 FNSYNG++N L+K H++S +DWLGP AM T I+VA+WGA+GNYMLLFLAGLQ+IP D Sbjct: 125 FNSYNGILNQFLLKYHIISNSIDWLGPDLAMATSIIVAIWGAIGNYMLLFLAGLQNIPDD 184 Query: 186 LYESAAIDGANAGRRFWNITLPMLAPVAQMVIMLAIIASLKGYESIMVITEGGPIGKTEV 245 +YESA++DGANA ++F+ IT+PML PV QM+IMLAI SLKGYESIMV+TEGGPIG+TEV Sbjct: 185 VYESASLDGANASQKFFYITIPMLGPVLQMIIMLAITISLKGYESIMVLTEGGPIGRTEV 244 Query: 246 MYLYLYKLLFPVSTGSPVAQQLGYGSAVGFASAVIVGAITGLYFFLSRKMNKVY 299 MYLY+Y++ FP+S+ S + QQ+GYGSAVGF SAVIVG IT YF+LS+++N+++ Sbjct: 245 MYLYVYRMFFPISSSSTMIQQIGYGSAVGFMSAVIVGLITVGYFWLSKRLNRIF 298 >B3K5P1.1 B3K5P1_9BACI Binding-protein-dependent transport systems inner membrane component Length = 300 Score = 341 bits (875), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 172/296 (58%), Positives = 217/296 (73%), Gaps = 2/296 (0%) Query: 4 KWKRLGENSLFLIPSIILTVALGIYPLFWMLRYMFYDYAGYGDALFVGLDNFRRLMRDSL 63 K K + + FL+PS ILT+ LGIYP+ W +RYMFYDY G+G FVGL NF R+++D Sbjct: 3 KAKSVAFSYSFLLPSFILTMVLGIYPIMWAMRYMFYDYKGFGAERFVGLANFERVVKDHQ 62 Query: 64 FWESVGNTFIFAGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXIYFMPTVISTAVISVVFY 123 FWESV NTFI+AGGK I+FMPT+ISTAV++VVF+ Sbjct: 63 FWESVANTFIYAGGKLLLSIPLALILAVILNWRIKGRNLLRAIFFMPTIISTAVMAVVFF 122 Query: 124 NIFNSYNGMVNTVLMKLHLVSQPVDWLGPKHAMLTVILVAVWGAVGNYMLLFLAGLQSIP 183 IFNSYNG++N L+K ++ +DWLG +AMLTVILVAVWGA+GNYMLLFLAGLQ+IP Sbjct: 123 TIFNSYNGILNQFLLKYQIIGNAIDWLGVDYAMLTVILVAVWGAIGNYMLLFLAGLQNIP 182 Query: 184 QDLYESAAIDGANAGRRFWNITLPMLAPVAQMVIMLAIIASLKGYESIMVITEGGPIGKT 243 +D+YES+A+DGA+ ++F IT+PML PV QM+IMLAII +LKGYESIMV+T+GGPIGKT Sbjct: 183 EDVYESSALDGASKFQQFRYITIPMLGPVMQMIIMLAIINALKGYESIMVMTDGGPIGKT 242 Query: 244 EVMYLYLYKLLFPV--STGSPVAQQLGYGSAVGFASAVIVGAITGLYFFLSRKMNK 297 VM+LY+YKL FP ST S Q+ GYGSAV F +AVIVG IT LYF+ S++M+ Sbjct: 243 NVMFLYVYKLFFPPAGSTASTQIQEFGYGSAVAFVTAVIVGVITILYFYGSKRMSH 298 >Q2BFH7.1 Q2BFH7_9BACI Sugar ABC transporter permease Length = 291 Score = 157 bits (398), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 101/286 (35%), Positives = 150/286 (52%), Gaps = 15/286 (5%) Query: 15 LIPSIILTVALGIYPLFWMLRYMFYDYAGYGDALFVGLDNFRRLMRDSLFWESVGNTFIF 74 L P++++ + I P+ Y ++ G+ FVGLDNF +L +DSLFW SV N Sbjct: 15 LAPALLIYLVFAILPILQSFYYSLMEWNGFSAMKFVGLDNFVQLFQDSLFWNSVKNNIYV 74 Query: 75 AGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXIYFMPTVISTAVISVVFYNIFNSYNGMVN 134 I F+P V+ST VIS+ + IFNS G++N Sbjct: 75 VLASVFGQVPIALFIALLLNRKIKGLKIFRTIGFLPVVLSTVVISLTWSLIFNSEQGLIN 134 Query: 135 TVLMKLHLVSQPVDWLGP-KHAMLTVILVAVWGAVGNYMLLFLAGLQSIPQDLYESAAID 193 +L + L +WLG K +M+ V++V +W VG Y+++FLA LQ++PQ++ E+A ID Sbjct: 135 ELLRAVGLDFLAQNWLGDTKFSMIAVLVVVIWQFVGLYLIIFLAALQNVPQEVLEAAKID 194 Query: 194 GANAGRRFWNITLPMLAPVAQMVIMLAIIASLKGYESIMVITEGGPIGKTEVMYLYLYKL 253 GA+ W IT+PM+ + ++LAI SLK ++ I V+T GGP T+VM LY++ Sbjct: 195 GASEWTTTWKITIPMIWDTIIVAVILAISGSLKTFDLIYVMTHGGPAHSTDVMALYMFNE 254 Query: 254 LFPVSTGSPVAQQLGYGSAVG----FASAVIVGAITGLYFFLSRKM 295 F Q GYGSAV F S +++ +T L L RKM Sbjct: 255 TFS-------KLQYGYGSAVSVVIFFFSLILIYTVTKL---LGRKM 290 >A4XHC7.1 A4XHC7_CALS8 Binding-protein-dependent transport systems inner membrane component Length = 296 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 95/287 (33%), Positives = 153/287 (53%), Gaps = 9/287 (3%) Query: 13 LFLIPSIILTVALGIYPLFWMLRYMFYDYAGYG-DALFVGLDNFRRLMRDSLFWESVGNT 71 LFL P++IL I+P+ Y++ G L++GL N++ L+ DS+FW + GN Sbjct: 17 LFLAPALILIGIYIIWPIIMSFDLSLYEWDGVSPQKLYLGLKNWKDLIHDSIFWHAFGNN 76 Query: 72 FIFAGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXIYFMPTVISTAVISVVFYNIFNSYNG 131 F ++++P ++S+ I V+F I++ G Sbjct: 77 IKFIFLSIIIEMPIAILIAVLLDRGGKKFNVFKSLFYLPMLMSSVAIGVLFKYIYDPNFG 136 Query: 132 MVNTVLMKLHLVSQPVDWLG-PKHAMLTVILVAVWGAVGNYMLLFLAGLQSIPQDLYESA 190 +++ +L LHL S DWLG PK A +V+ V W + YM+ F+A L +IPQ+LYE+A Sbjct: 137 LISGILSFLHLDSLNQDWLGDPKVAFYSVVAVICWQYIPFYMIFFIAALSNIPQELYEAA 196 Query: 191 AIDGANAGRRFWNITLPMLAPVAQMVIMLAIIASLKGYESIMVITEGGPIGKTEVMYLYL 250 IDGA G+ FW + LP+LAP + +L++I SLK ++ I V+TEGGP TE+M Y+ Sbjct: 197 KIDGATQGQYFWRVELPLLAPSIKTACILSLIGSLKYFDLIYVMTEGGPSNATELMATYM 256 Query: 251 YKLLFPVSTGSPVAQQLGYGSAVGFASAVIVGAITGLYFFLSRKMNK 297 YK F + ++GYGS + A +I+ +F+++K + Sbjct: 257 YKNAF-------ASFKMGYGSTIASAMFLIITTAGIFAYFVTKKKEE 296 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.143 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,601,468,362 Number of extensions: 60917375 Number of successful extensions: 240873 Number of sequences better than 1.0e-05: 5622 Number of HSP's gapped: 234514 Number of HSP's successfully gapped: 5633 Length of query: 299 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 164 Effective length of database: 1,788,859,178 Effective search space: 293372905192 Effective search space used: 293372905192 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)