BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0385.0003.p (467 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KER0.1 B3KER0_9BACI Putative uncharacterized protein 764 0.0 B3K6J2.1 B3K6J2_9BACI FAD dependent oxidoreductase 552 e-155 C3QRN7.1 C3QRN7_9BACE FAD dependent oxidoreductase 261 8e-68 A7LWF2.1 A7LWF2_BACOV Putative uncharacterized protein 260 2e-67 A6PNA6.1 A6PNA6_9BACT FAD dependent oxidoreductase 251 1e-64 >B3KER0.1 B3KER0_9BACI Putative uncharacterized protein Length = 458 Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/452 (82%), Positives = 394/452 (87%) Query: 9 GHITLPSASVPVTREVDVLVXXXXXXXXXXXXXXXXXXXXTLLVEQRGFLGGMGTVALVP 68 GHITLPSAS+PV+REVDVLV T+LVEQRGFLGGMGTVALVP Sbjct: 3 GHITLPSASIPVSREVDVLVIGGGASGIAAAIAAAKGGAKTMLVEQRGFLGGMGTVALVP 62 Query: 69 AFCPFTDKQKPIIRGLGLKLMERMKLACGPGYREEYRDMLDWVPIDPEVLKRVYDDAILE 128 AFCPFTDK+KPIIRGLGL+LMERMK AC P Y EEY++MLDWVPIDPEVLKRVYDDAILE Sbjct: 63 AFCPFTDKRKPIIRGLGLQLMERMKQACDPQYLEEYQEMLDWVPIDPEVLKRVYDDAILE 122 Query: 129 SGVTPLYHTFVYDVVVSEDHRTVEGVIVVNKTGRSFIRCRYIIDCSGDGDIAALSGVPFQ 188 SGVTPLYHTFVYDVV SED R VEGV+VVNKTGRSFI CRYIIDCSGDGDIAAL+G PFQ Sbjct: 123 SGVTPLYHTFVYDVVRSEDRRKVEGVVVVNKTGRSFIPCRYIIDCSGDGDIAALAGAPFQ 182 Query: 189 KGGEAGKLQPGSMCYLLANVDRPKFSRFLKESGDTGQLHATVERAIADGALPEGRKSVSG 248 KGGEAG+LQPGSMCYLLANVDRP+F+R+L+ESGDTGQLH TVE AI DGALPEGRKS+SG Sbjct: 183 KGGEAGELQPGSMCYLLANVDRPRFTRYLEESGDTGQLHKTVELAIEDGALPEGRKSISG 242 Query: 249 LAWVSDYLVGVNFGHVFGVDGTRAEDLTRGAIEGRRTAERQLQFFRSYVPGFEHAHMVAS 308 LAWVSDYLVGVNFGHVFGVDGT AEDLTRGAIEGRRTAERQLQFFR YVPGFE AHMVAS Sbjct: 243 LAWVSDYLVGVNFGHVFGVDGTLAEDLTRGAIEGRRTAERQLQFFRRYVPGFERAHMVAS 302 Query: 309 GEQIGIRETRRIEGDYVLTVDDFIAARSFPDDIARNAYYIDIHLANSKSEMTFNHLPPGV 368 GEQ+GIRETRRIEGDY+LTVDDF+AARSFPDDIARNAYYIDIHLANSKSEMTFNHLPPGV Sbjct: 303 GEQLGIRETRRIEGDYILTVDDFLAARSFPDDIARNAYYIDIHLANSKSEMTFNHLPPGV 362 Query: 369 SHGVPYRIMLPAGIDNLWVAGRSVSSDRAVQGSLRVMPNCFSMXXXXXXXXXXXXXXXXX 428 SHGVPYRIMLP G DNLWVAGR VSSDRAVQGSLRVMPNCFSM Sbjct: 363 SHGVPYRIMLPVGFDNLWVAGRCVSSDRAVQGSLRVMPNCFSMGQASGTAAALALRDGTG 422 Query: 429 SRGISVAELQQRLLEQDVWLGENFVPAAEHTG 460 SRGISVAELQQRLLEQDVWLGE+F+PA + G Sbjct: 423 SRGISVAELQQRLLEQDVWLGEDFIPADKQKG 454 >B3K6J2.1 B3K6J2_9BACI FAD dependent oxidoreductase Length = 450 Score = 552 bits (1423), Expect = e-155, Method: Compositional matrix adjust. Identities = 262/439 (59%), Positives = 328/439 (74%) Query: 12 TLPSASVPVTREVDVLVXXXXXXXXXXXXXXXXXXXXTLLVEQRGFLGGMGTVALVPAFC 71 TLP +P+ +VDV+V TLL+EQRGFLGGMGT ALVPAFC Sbjct: 8 TLPPEELPIMNQVDVVVVGGGPTGIAAAIAAANNGANTLLIEQRGFLGGMGTTALVPAFC 67 Query: 72 PFTDKQKPIIRGLGLKLMERMKLACGPGYREEYRDMLDWVPIDPEVLKRVYDDAILESGV 131 PFTD +KP+IRG+GL+LMERMK C P Y EY++ LDWVPID EVLKRVYD+A+LESG Sbjct: 68 PFTDHEKPVIRGIGLELMERMKANCKPSYITEYKEQLDWVPIDVEVLKRVYDEALLESGA 127 Query: 132 TPLYHTFVYDVVVSEDHRTVEGVIVVNKTGRSFIRCRYIIDCSGDGDIAALSGVPFQKGG 191 L+HTFV +V++ V G++++NK+GRS + +Y+ID +GD DIAAL+G PFQKGG Sbjct: 128 KVLFHTFVGQLVMNPGGHGVNGLVLLNKSGRSIVEAKYVIDATGDADIAALAGAPFQKGG 187 Query: 192 EAGKLQPGSMCYLLANVDRPKFSRFLKESGDTGQLHATVERAIADGALPEGRKSVSGLAW 251 +AG+LQPG+MCYLL NV+R +F +++++SGDTGQ+ V+ A ++G LP GRK VSG AW Sbjct: 188 DAGELQPGTMCYLLTNVNRERFRQYMRDSGDTGQIPQAVQLAQSNGDLPPGRKEVSGFAW 247 Query: 252 VSDYLVGVNFGHVFGVDGTRAEDLTRGAIEGRRTAERQLQFFRSYVPGFEHAHMVASGEQ 311 VSDYLVGVNFGHVFGVDGT+AEDLT+ A+EGR+ Q++F R YVPGFE AH+V++GEQ Sbjct: 248 VSDYLVGVNFGHVFGVDGTKAEDLTKAAVEGRKLVNIQVEFLRKYVPGFEDAHLVSTGEQ 307 Query: 312 IGIRETRRIEGDYVLTVDDFIAARSFPDDIARNAYYIDIHLANSKSEMTFNHLPPGVSHG 371 IGIRETRRI GDY+L DDFI+ RSF DDIARNAY+IDIH+A SK M +HLPPG SHG Sbjct: 308 IGIRETRRIVGDYMLVQDDFISMRSFEDDIARNAYFIDIHMATSKENMEIHHLPPGRSHG 367 Query: 372 VPYRIMLPAGIDNLWVAGRSVSSDRAVQGSLRVMPNCFSMXXXXXXXXXXXXXXXXXSRG 431 VPYR +LP G+ N+WVAGR+ S+DR VQGSLRVMPNCF+M SR Sbjct: 368 VPYRSLLPQGLANVWVAGRAASADRVVQGSLRVMPNCFAMGQAAGTAAAICAMTGSTSRE 427 Query: 432 ISVAELQQRLLEQDVWLGE 450 + + +LQ+ L+EQ WLGE Sbjct: 428 VDIKQLQRLLIEQGAWLGE 446 >C3QRN7.1 C3QRN7_9BACE FAD dependent oxidoreductase Length = 463 Score = 261 bits (668), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 151/401 (37%), Positives = 215/401 (53%), Gaps = 14/401 (3%) Query: 11 ITLPSASVPVTREVDVLVXXXXXXXXXXXXXXXXXXXXTLLVEQRGFLGGMGTVALVPAF 70 I L + + V DV+V TLL+E G LGGMGT +VPA+ Sbjct: 34 IRLKNTKIAVDDRWDVIVIGGGPGGCTAAISAAREGAKTLLIEAMGQLGGMGTAGMVPAW 93 Query: 71 CPFTDKQKPIIRGLGLKLMERMKLACGPGYREEYRDMLDWVPIDPEVLKRVYDDAILESG 130 CPF+D +K I RGL K+ E A G E + L+WV I+PE L +VYD + +SG Sbjct: 94 CPFSDGEKIIYRGLAEKIFE----ASKKGVPHERKQKLNWVNINPEYLMQVYDQMVADSG 149 Query: 131 VTPLYHTFVYDVVVSEDHRTVEGVIVVNKTGRSFIRCRYIIDCSGDGDIAALSGVPFQKG 190 L+ + V V +S + T++ +IV NK+G + + ID +GDGD+AA +G F+KG Sbjct: 150 AQVLFFSRVAAVEMSAND-TIDAIIVANKSGLVAFKAKVFIDATGDGDVAAWAGASFKKG 208 Query: 191 GEAGKLQPGSMCYLLANVDRPKFSRFLKESGDTGQLHATVERAIADGALPE-GRKSVSGL 249 GE G +Q ++C+ ANVD ++ + S T ++ + I G P G+ S L Sbjct: 209 GEDGVVQSSTLCFSFANVDSYHYN-LIGPSLHTSNKNSPIYDVIKSGKYPLIGKHFNSNL 267 Query: 250 AWVSDYLVGVNFGHVFGVDGTRAEDLTRGAIEGRRTAERQLQFFRSYVP-GFEHAHMVAS 308 + +V N GH+ VD T D TR GR+ AE+ L+ + P F A +V + Sbjct: 268 --IGPDVVQFNAGHIDNVDSTDPWDTTRAMATGRQIAEQYLEALKEVRPKAFGSAFVVKT 325 Query: 309 GEQIGIRETRRIEGDYVLTVDDFIAARSFPDDIARNAYYIDIHLANSKSEMTFNHLPPGV 368 +G+R++RRIEGDY T D++ ++F D+I RN YYID+H K G Sbjct: 326 ASLLGVRDSRRIEGDYTFTFQDWLERKTFEDEIGRNCYYIDVHKPGHKE----TRYKKGE 381 Query: 369 SHGVPYRIMLPAGIDNLWVAGRSVSSDRAVQGSLRVMPNCF 409 SHG+PYR + P G+ NL VAGR +S+D GSLRVMP C Sbjct: 382 SHGIPYRCLTPKGLKNLLVAGRCISTDEEAFGSLRVMPPCL 422 >A7LWF2.1 A7LWF2_BACOV Putative uncharacterized protein Length = 463 Score = 260 bits (664), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 154/401 (38%), Positives = 213/401 (53%), Gaps = 14/401 (3%) Query: 11 ITLPSASVPVTREVDVLVXXXXXXXXXXXXXXXXXXXXTLLVEQRGFLGGMGTVALVPAF 70 I L + + V DV+V TLL+E G LGGMGT +VPA+ Sbjct: 34 IRLKNTKIAVDDRWDVIVIGGGPAGCTAAISAAREGAKTLLIEAMGQLGGMGTAGMVPAW 93 Query: 71 CPFTDKQKPIIRGLGLKLMERMKLACGPGYREEYRDMLDWVPIDPEVLKRVYDDAILESG 130 CPF+D +K I RGL K+ E A G E + L+WV I+PE L +VYD + ESG Sbjct: 94 CPFSDGEKIIYRGLAEKIFE----ASRKGVPHERKQKLNWVNINPEYLMQVYDRMVAESG 149 Query: 131 VTPLYHTFVYDVVVSEDHRTVEGVIVVNKTGRSFIRCRYIIDCSGDGDIAALSGVPFQKG 190 L+ + V V +S D TV+ +IV NK+G + + ID +GDGD+A +G F+KG Sbjct: 150 AKVLFFSRVAAVEMSADD-TVDAIIVANKSGLVAFKAKVFIDATGDGDVATWAGASFKKG 208 Query: 191 GEAGKLQPGSMCYLLANVDRPKFSRFLKESGDTGQLHATVERAIADGALPE-GRKSVSGL 249 GE G LQ ++C+ ANVD ++ + S T ++ + AI G P GR S L Sbjct: 209 GEDGILQSSTLCFSFANVDSYNYN-LIGPSLHTSNKNSPIFDAIKSGKYPLIGRHFNSNL 267 Query: 250 AWVSDYLVGVNFGHVFGVDGTRAEDLTRGAIEGRRTAERQLQFFRSYVPG-FEHAHMVAS 308 + +V N GH+ VD T TR GR+ AE+ L+ + P F A +V + Sbjct: 268 --IGPDVVQFNAGHIDNVDSTDPWATTRAMATGRQIAEQYLEALKELQPKTFGSAFVVKT 325 Query: 309 GEQIGIRETRRIEGDYVLTVDDFIAARSFPDDIARNAYYIDIHLANSKSEMTFNHLPPGV 368 +G+R++RRIEGDY T D++ ++F D+I RN YYID+H K G Sbjct: 326 ASLLGVRDSRRIEGDYTFTFQDWLERKTFEDEIGRNCYYIDVHKPGHKE----TRYKKGE 381 Query: 369 SHGVPYRIMLPAGIDNLWVAGRSVSSDRAVQGSLRVMPNCF 409 SHG+PYR + P G+ NL AGR +S+D GSLRVMP C Sbjct: 382 SHGIPYRCLTPKGMKNLLTAGRCISTDEEAFGSLRVMPPCL 422 >A6PNA6.1 A6PNA6_9BACT FAD dependent oxidoreductase Length = 445 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 155/406 (38%), Positives = 217/406 (53%), Gaps = 15/406 (3%) Query: 13 LPSASVPVTREVDVLVXXXXXXXXXXXXXXXXXXXXTLLVEQRGFLGGMGTVALVPAFCP 72 L S +P++ DV+V TL++EQ G LGGMGT L+PA+CP Sbjct: 5 LISKQIPLSSGWDVIVVGGGPAGSTAAAAASRLGAKTLVIEQTGALGGMGTQGLLPAWCP 64 Query: 73 FTDKQKPIIRGLGLKLMERMKLACGPGYREEYRDMLDWVPIDPEVLKRVYDDAILESGVT 132 F+D +K I RGL + R A P + LDWVPID E LKRVYD + E+G Sbjct: 65 FSDGEKMIYRGLAEVVFNRAS-AFVP---QNEPGKLDWVPIDTEGLKRVYDGIVTENGAE 120 Query: 133 PLYHTFVYDVVVSEDHRTVEGVIVVNKTGRSFIRCRYIIDCSGDGDIAALSGVPFQKGGE 192 L+H+FV V D R ++ +IV NK G + + + +D +GDGDIAA +G F+ G + Sbjct: 121 VLFHSFVCGVEKKSD-REIDALIVGNKRGLTAYQAKTYVDATGDGDIAAWAGADFEIGEK 179 Query: 193 A-GKLQPGSMCYLLANVDRPKFSRFLKESGDTGQLHATVERAIADGALPEGRKSVSGLAW 251 GKLQ ++C+ L NVD + ++ G + + +AD P + Sbjct: 180 GTGKLQLSTLCFHLDNVDSFYYPHTVRNFIHGGDPRSVIHDIMADPEFPSINHPHLCNNF 239 Query: 252 VSDYLVGVNFGHVFGVDGTRAEDLTRGAIEGRRTAERQLQFFRSYVP-GFEHAHMVASGE 310 V VG N GH+ +D E ++RG I GR+ + P F AH+ A+ Sbjct: 240 VGPSTVGYNAGHL-ALDTLSPESVSRGMIAGRKLVSDYRNALAKHAPDAFGGAHIAATAN 298 Query: 311 QIGIRETRRIEGDYVLTVDDFIAARSFPDDIARNAYYIDIHLANSK--SEMTF-----NH 363 +G+RE RRI GDYVL+ D++ RSF D+I RN+Y+IDIH +S SE H Sbjct: 299 LMGVREGRRIRGDYVLSWRDYVERRSFDDEIGRNSYFIDIHGGDSSITSEAQALLKEKGH 358 Query: 364 LPPGVSHGVPYRIMLPAGIDNLWVAGRSVSSDRAVQGSLRVMPNCF 409 G SHG+PYR ++P +DNL ++GR +SSDR V GS+RVMP C Sbjct: 359 CEKGESHGIPYRSLVPEKLDNLLLSGRCISSDRIVYGSIRVMPVCL 404 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.139 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,737,107,348 Number of extensions: 112104226 Number of successful extensions: 225198 Number of sequences better than 1.0e-05: 223 Number of HSP's gapped: 224623 Number of HSP's successfully gapped: 237 Length of query: 467 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 328 Effective length of database: 1,751,175,118 Effective search space: 574385438704 Effective search space used: 574385438704 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)