BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0383.0018.p (154 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KEP8.1 B3KEP8_9BACI 3-demethylubiquinone-9 3-methyltransferase 277 2e-73 B1DMK2.1 B1DMK2_9BACL Glyoxalase/bleomycin resistance protein/di... 127 2e-28 A3IEW3.1 A3IEW3_9BACI Uncharacterized conserved protein, phnB fa... 115 1e-24 B1HNS4.1 B1HNS4_LYSSC Protein phnB 114 3e-24 Q97D00.1 Q97D00_CLOAB Uncharacterized conserved protein, phnB fa... 112 9e-24 >B3KEP8.1 B3KEP8_9BACI 3-demethylubiquinone-9 3-methyltransferase Length = 154 Score = 277 bits (708), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 131/154 (85%), Positives = 145/154 (94%) Query: 1 MSAIAYLNFDGIAEQAIEFYAEALNANEVKKVKFGDIPQDPNYPMPENELNMIMESSIEF 60 MSAIAYLNFDGIAE+AIEFY+EAL A EVKKVKF D PQDPNYP+PENELN+IMESS+EF Sbjct: 1 MSAIAYLNFDGIAEEAIEFYSEALQAYEVKKVKFKDFPQDPNYPLPENELNLIMESSVEF 60 Query: 61 AGGKIMMSDILPSMKAVTGELVQGNNILINLVIDDKQKLEEYFNHLALGGHVIMPLSNTP 120 AGGKIMMSDILPSMKAVTGELV+GNN+LI+LVI+D+Q LEEYFN L++GGHV+MPLSNTP Sbjct: 61 AGGKIMMSDILPSMKAVTGELVKGNNMLISLVIEDQQALEEYFNQLSVGGHVVMPLSNTP 120 Query: 121 WSSCFGMLVDKFGVNWKFNSDADQFLDKVISNKQ 154 WSSCFGMLVDKFGV WKFN DA +FLDKVISNKQ Sbjct: 121 WSSCFGMLVDKFGVAWKFNRDAYRFLDKVISNKQ 154 >B1DMK2.1 B1DMK2_9BACL Glyoxalase/bleomycin resistance protein/dioxygenase Length = 140 Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 59/139 (42%), Positives = 84/139 (60%), Gaps = 5/139 (3%) Query: 1 MSAIAYLNFDGIAEQAIEFYAEALNANEVKKVKFGDIPQDPNYPMPENELNMIMESSIEF 60 MS AYLNFDG +A EFYAE ++ K + FGD+P +P YP+PE+ N+IM + + Sbjct: 1 MSVDAYLNFDGNCREAAEFYAEVFGLDKPKLMTFGDVPPNPEYPLPEDAKNLIMHTRLNI 60 Query: 61 AGGKIMMSDILPSMKAVTGELVQGNNILINLVIDDKQKLEEYFNHLALGGHVIMPLSNTP 120 G +M SD+ P M GNNI + V +D+ KL F+ L +GG++ M L T Sbjct: 61 GGSNVMFSDVFPGMP-----FTVGNNITLAFVEEDEAKLRSAFDRLKVGGNIAMELQETF 115 Query: 121 WSSCFGMLVDKFGVNWKFN 139 WS +G + DKFG++W+FN Sbjct: 116 WSKLYGQVTDKFGIHWQFN 134 >A3IEW3.1 A3IEW3_9BACI Uncharacterized conserved protein, phnB family (Fragment) Length = 131 Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 49/136 (36%), Positives = 83/136 (61%), Gaps = 5/136 (3%) Query: 9 FDGIAEQAIEFYAEALNANEVKKVKFGDIPQDPNYPMPENELNMIMESSIEFAGGKIMMS 68 F+G +A+ FY +A + ++ + + FGD PQ+P+YP+PE +++M + + G +IM S Sbjct: 1 FNGNCREAVAFYEDAFSTDKAEIMTFGDSPQNPDYPLPEEAKDLVMHTRLSVFGSRIMFS 60 Query: 69 DILPSMKAVTGELVQGNNILINLVIDDKQKLEEYFNHLALGGHVIMPLSNTPWSSCFGML 128 D P G NN+ + +V DD++++ + F+ L GG V+M L T WS C+G L Sbjct: 61 DTFPGSPYAVG-----NNVTLAVVSDDEEQMRKAFDKLKDGGKVVMELQETFWSKCYGSL 115 Query: 129 VDKFGVNWKFNSDADQ 144 DKFGV W+F+ + ++ Sbjct: 116 TDKFGVEWQFSHEVNE 131 >B1HNS4.1 B1HNS4_LYSSC Protein phnB Length = 150 Score = 114 bits (285), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 51/141 (36%), Positives = 84/141 (59%), Gaps = 5/141 (3%) Query: 1 MSAIAYLNFDGIAEQAIEFYAEALNANEVKKVKFGDIPQDPNYPMPENELNMIMESSIEF 60 M+ YL F+G +A+ FY +A + ++ + + FGD PQ+P+YP+PE +++M + + Sbjct: 12 MAVEVYLIFNGNCREAVAFYEDAFSTDKAEIMTFGDSPQNPDYPLPEEAKDLVMHTRLSV 71 Query: 61 AGGKIMMSDILPSMKAVTGELVQGNNILINLVIDDKQKLEEYFNHLALGGHVIMPLSNTP 120 G +IM SD P GNN+ + +V DD++++ + F+ L GG V+M L T Sbjct: 72 FGSRIMFSDTFPG-----SPFTVGNNVTLAVVSDDEEQVRKAFDKLKDGGKVVMELQETF 126 Query: 121 WSSCFGMLVDKFGVNWKFNSD 141 WS +G L DKFGV W+F+ + Sbjct: 127 WSKWYGSLTDKFGVEWQFSHE 147 >Q97D00.1 Q97D00_CLOAB Uncharacterized conserved protein, phnB family Length = 137 Score = 112 bits (281), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 84/141 (59%), Gaps = 5/141 (3%) Query: 1 MSAIAYLNFDGIAEQAIEFYAEALNANEVKKVKFGDIPQDPNYPMPENELNMIMESSIEF 60 M+ AY+NFDG +A+EFYAE + K + +GD+P E N+++ +++E Sbjct: 1 MAIQAYINFDGNCREAVEFYAEVFETKKPKIMVYGDMPPKEGAKFNEETKNLVLNAALEV 60 Query: 61 AGGKIMMSDILPSMKAVTGELVQGNNILINLVIDDKQKLEEYFNHLALGGHVIMPLSNTP 120 G IM SDI+P MK LV GNNI + ++I+D +L+ FN L G V+M L T Sbjct: 61 KGSTIMFSDIVPGMK-----LVVGNNISLVVIINDIDELKLIFNRLKEKGTVLMELQETF 115 Query: 121 WSSCFGMLVDKFGVNWKFNSD 141 WS C+G +VDKFG+ W+ + + Sbjct: 116 WSKCYGYVVDKFGIEWQLSYE 136 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 937,885,631 Number of extensions: 37598364 Number of successful extensions: 88398 Number of sequences better than 1.0e-05: 525 Number of HSP's gapped: 87994 Number of HSP's successfully gapped: 525 Length of query: 154 Length of database: 3,060,696,203 Length adjustment: 116 Effective length of query: 38 Effective length of database: 1,967,858,463 Effective search space: 74778621594 Effective search space used: 74778621594 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)