BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0383.0016.p (335 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2YST8.1 C2YST8_BACCE Putative uncharacterized protein 195 6e-48 C0ZEF4.1 C0ZEF4_BREBN Putative uncharacterized protein 187 2e-45 C2VUZ6.1 C2VUZ6_BACCE Putative uncharacterized protein 186 3e-45 Q4MPA9.1 Q4MPA9_BACCE Putative uncharacterized protein 186 3e-45 C2QUA5.1 C2QUA5_BACCE Putative uncharacterized protein 184 1e-44 >C2YST8.1 C2YST8_BACCE Putative uncharacterized protein Length = 332 Score = 195 bits (495), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 106/317 (33%), Positives = 165/317 (52%), Gaps = 11/317 (3%) Query: 21 FSAEMLSAERVRRGLMNEKWIVETNKGRLFAKSYHPERFKMHDPEFRGKIENALQLQLLF 80 F ++ A+ + RG +N KW +ET+ G K Y+ ER+KM++PE + AL Q Sbjct: 25 FEFKIQKAKPIHRGWLNLKWKLETDAGSFVLKQYNKERYKMYNPEL---LIQALHQQQRL 81 Query: 81 YQAGGPCPEPLVLEGRCMHILPCGRYMTVMMCCPGAMVPAGMIGEHGMHSLGRAAADMHA 140 + G CP+ L + MH+ V+ G ++ G + E ++SLG+ MH Sbjct: 82 HDNGVSCPKLLTYKNNVMHLSKNNERFIVLEHKEGNLISPGKVNEKEIYSLGKTIGQMHN 141 Query: 141 VWDSAAASGFGAAVPPEEPVWRL-SRKEMERTWEVNW-DAARDSSERVRNALQLQKAIVD 198 + + G+ + E+P + L +++E + WE +A + E + + ++LQ+ Sbjct: 142 LLND------GSLIKGEKPKFVLPTKEERLKHWENKRREAEQLGKEHILSHIKLQQEATQ 195 Query: 199 SLGDDDFTPLTAGWAHLDLWADNLLFEGDALTAIVDFDRARYSFPALDLGRAVLSGTLSG 258 + D F GW H DLW DN LF D ++AI+DFDR Y + LD+GRAV+S L Sbjct: 196 LINIDQFYSSKKGWVHRDLWVDNFLFHNDEVSAILDFDRMDYDYVELDIGRAVISCALHD 255 Query: 259 RGFRKDAVAAFAEGYRSVRALPQGSLVRAIKYVWCIESLWWIKPSFESSSAVPVRFAEEM 318 K VA+F GYR+ P GS+VRAI+ +W +ES WWI + + S P RFA+EM Sbjct: 256 GVLNKSLVASFLAGYRNKLDFPIGSIVRAIQMLWYMESTWWIHANMDQHSVPPSRFADEM 315 Query: 319 IHTAERWEQLDALLGGI 335 AE + L +L + Sbjct: 316 NWIAENYSALHNILADL 332 >C0ZEF4.1 C0ZEF4_BREBN Putative uncharacterized protein Length = 328 Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 107/336 (31%), Positives = 172/336 (51%), Gaps = 14/336 (4%) Query: 3 LTTEDQLVNEIADWLKKHFSAEMLSAERVRRGLMNEKWIVETNKGRLFAKSYHPERFKMH 62 + TE+ ++ ++ F E++ + ++RG +N KW V T G+ K Y+ ERFK++ Sbjct: 4 ILTEELILEDLIRASHHFFGLEVIESSPIKRGWLNLKWRVTTESGQFLLKQYNKERFKLY 63 Query: 63 DPEFRGKIENALQLQLLFYQAGGPCPEPLVLEGRCMHILPCGRYMTVMMCCPGAMVPAGM 122 +PE ++ A Q+ G CP L + + G VM C G ++ G Sbjct: 64 NPE---DLKFAFSQQVRLNNQGLACPNLLSHDESILLESDKGELFIVMEYCQGKLISPGK 120 Query: 123 IGEHGMHSLGRAAADMHAVWD--SAAASGFGAAVPPEEPVWRLSRKEMERTWEVNWDAAR 180 H +++LGRA MH + + + + VPP SR+E W+ AR Sbjct: 121 ANAHQVYNLGRATGKMHRLLNDGTLGSKDTPQFVPP-------SREERLAHWKSVLKKAR 173 Query: 181 DSSE-RVRNALQLQKAIVDSLGDDDFTPLTAGWAHLDLWADNLLFEGDALTAIVDFDRAR 239 ++ + + + ++ Q + + ++ L+ GWAH DLW DN+LF+ + LTAI+DFDR + Sbjct: 174 EAGKIELLDDIETQLKATEEMNIENLEILSTGWAHRDLWVDNILFDHNRLTAILDFDRLK 233 Query: 240 YSFPALDLGRAVLSGTLSGRGFRKDAVAAFAEGYRSVRALPQGSLVRAIKYVWCIESLWW 299 Y +P LD+ RAV+S L G F +AF EGY R + G L +++ +W +ES WW Sbjct: 234 YDYPQLDVARAVMSCAL-GDYFDVSLASAFIEGYSEERTVMDGYLTNSLQLLWYMESPWW 292 Query: 300 IKPSFESSSAVPVRFAEEMIHTAERWEQLDALLGGI 335 I + + S P RFA+EMI A + + LLG I Sbjct: 293 IHSNMDQHSVPPARFAKEMIWLANNHKNMSTLLGNI 328 >C2VUZ6.1 C2VUZ6_BACCE Putative uncharacterized protein Length = 332 Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 102/306 (33%), Positives = 153/306 (50%), Gaps = 9/306 (2%) Query: 31 VRRGLMNEKWIVETNKGRLFAKSYHPERFKMHDPEFRGKIENALQLQLLFYQAGGPCPEP 90 + RG +N KW +ET+ G K Y+ ER+K++DP + AL Q + G CP+ Sbjct: 35 IHRGWLNLKWKLETDVGNFVLKQYNKERYKLYDP---LTLLQALHQQQRLHNNGVSCPKL 91 Query: 91 LVLEGRCMHILPCGRYMTVMMCCPGAMVPAGMIGEHGMHSLGRAAADMHAVW-DSAAASG 149 L + MH V+ G ++ G + E ++SLG+ MH + D + G Sbjct: 92 LTYKNNVMHTSKNNERFVVLEYKEGNLISPGKVNEKEIYSLGKTIGHMHNLLNDGSLIEG 151 Query: 150 FGAAVPPEEPVWRLSRKEMERTWEVNWDAARDSSERVRNALQLQKAIVDSLGDDDFTPLT 209 P RL+ E +R +A + E + ++LQ+ + D F Sbjct: 152 ETPKFVPPTKEERLTHWEEKRR-----EAEKLGKEHILPYIKLQQEATQLVNVDQFYNSK 206 Query: 210 AGWAHLDLWADNLLFEGDALTAIVDFDRARYSFPALDLGRAVLSGTLSGRGFRKDAVAAF 269 GW H DLW DN LF D ++AI+DFDR Y + LD+GRAV+S L K VA+F Sbjct: 207 KGWVHRDLWVDNFLFHNDKVSAILDFDRLDYDYVELDIGRAVISCALHDGVLNKSLVASF 266 Query: 270 AEGYRSVRALPQGSLVRAIKYVWCIESLWWIKPSFESSSAVPVRFAEEMIHTAERWEQLD 329 EGYR+ P G++VRAI+ +W +ES WWI + + S P RFA+EM A+ + L Sbjct: 267 LEGYRNELDFPVGNIVRAIQMLWYMESTWWIHANMDQHSVPPSRFADEMNWIAKNYSALH 326 Query: 330 ALLGGI 335 ++L + Sbjct: 327 SILADL 332 >Q4MPA9.1 Q4MPA9_BACCE Putative uncharacterized protein Length = 332 Score = 186 bits (471), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 108/307 (35%), Positives = 156/307 (50%), Gaps = 11/307 (3%) Query: 31 VRRGLMNEKWIVETNKGRLFAKSYHPERFKMHDPEFRGKIENALQLQLLFYQAGGPCPEP 90 + RG +N KW +ET+ G K Y+ ER+K++ P + ALQ Q + G CP+ Sbjct: 35 IHRGWLNLKWKLETDVGNFVLKQYNKERYKLYAPLTLLQ---ALQQQQRLHNNGVRCPKL 91 Query: 91 LVLEGRCMHILPCGRYMTVMMCCPGAMVPAGMIGEHGMHSLGRAAADMHAVWDSAAASGF 150 L + MHI V+ G +V G + E +HSLG+ MH + + Sbjct: 92 LTYKNNVMHISKTDERFIVLEHKEGNLVSPGKVNEKEIHSLGQTIGHMHKLLND------ 145 Query: 151 GAAVPPEEPVWRLSRKEMERTW--EVNWDAARDSSERVRNALQLQKAIVDSLGDDDFTPL 208 G + E P + KE T+ E +A + E + ++LQ+ + D F Sbjct: 146 GTLIEGEIPKFVPPTKEERLTYWEEKRREAEKLGKEHILPYIKLQQEATQLVNVDQFYNS 205 Query: 209 TAGWAHLDLWADNLLFEGDALTAIVDFDRARYSFPALDLGRAVLSGTLSGRGFRKDAVAA 268 GW H DLW DN LF D ++AI+DFDR Y + LD+GRAV+S L G K VA+ Sbjct: 206 KKGWVHRDLWVDNFLFHNDKVSAILDFDRMDYDYVELDIGRAVISCALHDEGLNKSLVAS 265 Query: 269 FAEGYRSVRALPQGSLVRAIKYVWCIESLWWIKPSFESSSAVPVRFAEEMIHTAERWEQL 328 F EGYR+ P G++VRAI+ +W +ES WWI + + S P RFA+EM AE + L Sbjct: 266 FLEGYRNELDFPVGNIVRAIQMLWYMESTWWIHANMDQHSVPPSRFADEMNWIAENYGAL 325 Query: 329 DALLGGI 335 +L G+ Sbjct: 326 HNMLAGL 332 >C2QUA5.1 C2QUA5_BACCE Putative uncharacterized protein Length = 321 Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 107/307 (34%), Positives = 154/307 (50%), Gaps = 11/307 (3%) Query: 31 VRRGLMNEKWIVETNKGRLFAKSYHPERFKMHDPEFRGKIENALQLQLLFYQAGGPCPEP 90 + RG +N KW +ET+ G K Y+ ER+K++ P + ALQ Q + G CP+ Sbjct: 24 IHRGWLNLKWKLETDVGNFVLKQYNKERYKLYAPLTLLQ---ALQQQQRLHNNGVRCPKL 80 Query: 91 LVLEGRCMHILPCGRYMTVMMCCPGAMVPAGMIGEHGMHSLGRAAADMHAVWDSAAASGF 150 L + MHI V+ G +V G + E +HSLG+ MH + + Sbjct: 81 LTYKNNVMHISKTDERFIVLEHKEGNLVSPGKVNEKEIHSLGQTIGHMHKLLND------ 134 Query: 151 GAAVPPEEPVWRLSRKEMERTW--EVNWDAARDSSERVRNALQLQKAIVDSLGDDDFTPL 208 G + E P + KE T+ E +A + E + ++LQ+ + D F Sbjct: 135 GTLIEGEIPKFVPPTKEERLTYWEEKRREAEKLGKEHILPYIKLQQEATQLVNVDQFYNS 194 Query: 209 TAGWAHLDLWADNLLFEGDALTAIVDFDRARYSFPALDLGRAVLSGTLSGRGFRKDAVAA 268 GW H DLW DN LF D ++AI+DFDR Y + LD+GRAV+S L G K VA+ Sbjct: 195 KKGWVHRDLWVDNFLFHNDKVSAILDFDRMDYDYVELDIGRAVISCALHDEGLNKSLVAS 254 Query: 269 FAEGYRSVRALPQGSLVRAIKYVWCIESLWWIKPSFESSSAVPVRFAEEMIHTAERWEQL 328 F EGYR+ P G +VR I+ +W +ES WWI + + S P RFA+EM AE + L Sbjct: 255 FLEGYRNELDFPVGDIVRTIQMLWYMESTWWIHANMDQHSVPPSRFADEMNWIAENYGAL 314 Query: 329 DALLGGI 335 +L G+ Sbjct: 315 HNMLAGL 321 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.136 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,100,006,019 Number of extensions: 88904036 Number of successful extensions: 245149 Number of sequences better than 1.0e-05: 43 Number of HSP's gapped: 245169 Number of HSP's successfully gapped: 43 Length of query: 335 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 199 Effective length of database: 1,779,438,163 Effective search space: 354108194437 Effective search space used: 354108194437 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)