BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0383.0013.p
         (72 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B5V6Q6.1 B5V6Q6_BACCE Transcriptional regulator, MerR family           69   2e-10
B4BTC4.1 B4BTC4_9CHRO Transcriptional regulator, XRE family            68   2e-10
B4AWI0.1 B4AWI0_9CHRO Transcriptional regulator, XRE family            68   3e-10
B7K4B4.1 B7K4B4_CYAP8 Transcriptional regulator, XRE family            68   3e-10
B7GM58.1 B7GM58_ANOFW Predicted transcriptional regulator, xre f...    68   3e-10

>B5V6Q6.1 B5V6Q6_BACCE Transcriptional regulator, MerR family
          Length = 119

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 44/59 (74%)

Query: 4  EILKLVGTRIRALRKERGLSQEALGEKGGFHFSYIGQIERGEKNVSLLNLHKIAESLEV 62
          + LKLVG  IR LRK+RGL+QE L E+     +YIG +ERGE+N+S+L L KIA+ LEV
Sbjct: 3  DFLKLVGENIRLLRKKRGLTQEELAERINLQQAYIGGVERGERNISMLTLQKIADGLEV 61


>B4BTC4.1 B4BTC4_9CHRO Transcriptional regulator, XRE family
          Length = 99

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 45/62 (72%), Gaps = 1/62 (1%)

Query: 1  MDKEILKLVGTRIRALRKERGLSQEALGEKGGFHFSYIGQIERGEKNVSLLNLHKIAESL 60
          MD  + K  G R+R  RK  G+SQ+ L EK G H +YIG IERGE+NVSLLN+ ++A++L
Sbjct: 28 MDARV-KAFGMRVRYFRKLLGISQDDLAEKAGMHRTYIGAIERGERNVSLLNILRLADAL 86

Query: 61 EV 62
          E+
Sbjct: 87 EI 88


>B4AWI0.1 B4AWI0_9CHRO Transcriptional regulator, XRE family
          Length = 78

 Score = 67.8 bits (164), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 43/59 (72%)

Query: 2  DKEILKLVGTRIRALRKERGLSQEALGEKGGFHFSYIGQIERGEKNVSLLNLHKIAESL 60
          D +I K  G R+R LR+ RGLSQEAL +      SYIG +ERGE+N+SLLN+ KIA++L
Sbjct: 6  DNDIRKQFGNRLRYLRQTRGLSQEALADLCNLDRSYIGGVERGERNISLLNIKKIADAL 64


>B7K4B4.1 B7K4B4_CYAP8 Transcriptional regulator, XRE family
          Length = 72

 Score = 67.8 bits (164), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 45/62 (72%), Gaps = 1/62 (1%)

Query: 1  MDKEILKLVGTRIRALRKERGLSQEALGEKGGFHFSYIGQIERGEKNVSLLNLHKIAESL 60
          MD  + K  G R+R  RK  G+SQ+ L EK G H +YIG IERGE+NVSLLN+ ++A++L
Sbjct: 1  MDARV-KAFGMRVRYFRKLLGISQDDLAEKAGMHRTYIGAIERGERNVSLLNILRLADAL 59

Query: 61 EV 62
          E+
Sbjct: 60 EI 61


>B7GM58.1 B7GM58_ANOFW Predicted transcriptional regulator, xre family
          Length = 81

 Score = 67.8 bits (164), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 5  ILKLVGTRIRALRKERGLSQEALGEKGGFHFSYIGQIERGEKNVSLLNLHKIAESLEV 62
          +LK++G  IR++R    LSQE L  + G H +YIG +ERGEKN+++LNL KIA +LEV
Sbjct: 10 VLKIIGNNIRSIRTSLNLSQEELAFESGLHRTYIGAVERGEKNITILNLIKIANALEV 67


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.139    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 326,082,176
Number of extensions: 10483911
Number of successful extensions: 32347
Number of sequences better than 1.0e-05: 105
Number of HSP's gapped: 32469
Number of HSP's successfully gapped: 105
Length of query: 72
Length of database: 3,060,696,203
Length adjustment: 43
Effective length of query: 29
Effective length of database: 2,655,592,558
Effective search space: 77012184182
Effective search space used: 77012184182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)