BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0383.0010.p
         (103 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9Y877.1 B9Y877_9FIRM Putative uncharacterized protein                 89   9e-17
B2V8D1.1 B2V8D1_SULSY Putative ferredoxin 2Fe-2S protein               86   1e-15
P07324.1 FER2_CLOPA Ferredoxin, 2Fe-2S                                 85   3e-15
Q7BKY9.1 Q7BKY9_CLOBE 2Fe2S ferredoxin                                 84   3e-15
A8MJ02.1 A8MJ02_ALKOO NADH dehydrogenase (Quinone) EC=1.6.99.5         84   6e-15

>B9Y877.1 B9Y877_9FIRM Putative uncharacterized protein
          Length = 628

 Score = 89.4 bits (220), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 36/88 (40%), Positives = 57/88 (64%)

Query: 11  HLLFCCSEHCNNQDVEDVMQEFKEQLVEKGINKTVKINKTSCLGLCGNGPFVIVYPDGIW 70
           H+L C    C +     +M++ ++QL+ +G+++ V++ KT C GLC  GP V VYPD I+
Sbjct: 35  HVLVCAGTGCTSSSSALIMEQMQQQLIARGLDQEVRVIKTGCFGLCQKGPIVAVYPDKIF 94

Query: 71  YYNVTTDDVERIVEEHLVNGEPVEELVM 98
           Y +V  DDV  I+E+H + G+PV+ L M
Sbjct: 95  YCHVKPDDVGEIIEQHFIGGQPVKRLEM 122


>B2V8D1.1 B2V8D1_SULSY Putative ferredoxin 2Fe-2S protein
          Length = 108

 Score = 85.5 bits (210), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 6/97 (6%)

Query: 10  KHLLFCCSE------HCNNQDVEDVMQEFKEQLVEKGINKTVKINKTSCLGLCGNGPFVI 63
           +H+  C          C ++  + +  +F+E L+ KG+   + +  T CLG C  GP V+
Sbjct: 5   RHVFVCMQRKPPGMPSCGDKGSDQIFMKFQEALMTKGLFNKMAVTATGCLGPCMFGPNVV 64

Query: 64  VYPDGIWYYNVTTDDVERIVEEHLVNGEPVEELVMLK 100
           VYPD IWY NVT  DVE IV++H++ G+PVE L++ K
Sbjct: 65  VYPDAIWYGNVTPADVEEIVQKHIIEGQPVERLIVSK 101


>P07324.1 FER2_CLOPA Ferredoxin, 2Fe-2S
          Length = 102

 Score = 84.7 bits (208), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 59/96 (61%), Gaps = 9/96 (9%)

Query: 10  KHLLFCCSE---------HCNNQDVEDVMQEFKEQLVEKGINKTVKINKTSCLGLCGNGP 60
           KH +F C+           C +++  ++++ F E+L  + ++  V +N T C G+C  GP
Sbjct: 5   KHHIFVCTSCRLNGKQQGFCYSKNSVEIVETFMEELDSRDLSSEVMVNNTGCFGICSQGP 64

Query: 61  FVIVYPDGIWYYNVTTDDVERIVEEHLVNGEPVEEL 96
            V+VYP+G+WY NVT DDVE IVE H+ NGE V+ L
Sbjct: 65  IVVVYPEGVWYGNVTADDVEEIVESHIENGEVVKRL 100


>Q7BKY9.1 Q7BKY9_CLOBE 2Fe2S ferredoxin
          Length = 102

 Score = 84.3 bits (207), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/99 (42%), Positives = 61/99 (61%), Gaps = 8/99 (8%)

Query: 8   LKKHLLFCCS--------EHCNNQDVEDVMQEFKEQLVEKGINKTVKINKTSCLGLCGNG 59
           +K H+  C S          C ++D   V+Q+F E++ E+ +   V +  T CLG+C  G
Sbjct: 4   IKHHIFVCASCRVNGMQKGMCYSKDSVKVVQKFMEEVEERDLINEVMVTNTGCLGVCNKG 63

Query: 60  PFVIVYPDGIWYYNVTTDDVERIVEEHLVNGEPVEELVM 98
           P V+VYP+G WY NV  +DVERIVEEH+  G+ V+ELV+
Sbjct: 64  PIVVVYPEGTWYGNVKVEDVERIVEEHIEGGKVVQELVI 102


>A8MJ02.1 A8MJ02_ALKOO NADH dehydrogenase (Quinone) EC=1.6.99.5
          Length = 631

 Score = 83.6 bits (205), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 57/90 (63%)

Query: 9   KKHLLFCCSEHCNNQDVEDVMQEFKEQLVEKGINKTVKINKTSCLGLCGNGPFVIVYPDG 68
           +KH+L C    C +     + ++F+EQ+ +  +N  VKI KT C G C  GP V++YP+G
Sbjct: 40  RKHVLVCAGTGCTSSKSPQIQKKFEEQIEQNNLNDEVKIVKTGCFGFCEAGPIVVIYPEG 99

Query: 69  IWYYNVTTDDVERIVEEHLVNGEPVEELVM 98
            +Y ++  +DVERIV+EHL+    V++LV 
Sbjct: 100 TFYSHIKVEDVERIVKEHLLEDMVVQDLVF 129


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 629,586,138
Number of extensions: 24253611
Number of successful extensions: 72735
Number of sequences better than 1.0e-05: 491
Number of HSP's gapped: 72790
Number of HSP's successfully gapped: 491
Length of query: 103
Length of database: 3,060,696,203
Length adjustment: 71
Effective length of query: 32
Effective length of database: 2,391,804,138
Effective search space: 76537732416
Effective search space used: 76537732416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)