BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0383.0009.p (282 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D6P7.1 B1D6P7_9BACL Transcriptional regulator, AraC family 306 1e-81 B8D1C2.1 B8D1C2_HALOH Transcriptional regulator, AraC family 208 5e-52 B1DIH0.1 B1DIH0_9BACL Transcriptional regulator, AraC family 207 6e-52 C4IHE3.1 C4IHE3_CLOBU Msm operon regulatory protein 205 3e-51 C4IMA5.1 C4IMA5_CLOBU Transcriptional regulator, AraC family 195 4e-48 >B1D6P7.1 B1D6P7_9BACL Transcriptional regulator, AraC family Length = 272 Score = 306 bits (784), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 139/272 (51%), Positives = 191/272 (70%) Query: 1 MAIFKYNSERPFRGNPDLHLHYWGREECAPGHSVGPGVRDLYKIHFIHAGTGRVTVGRET 60 M F YNS R R NPD +L YWG+E+C+P H+ GPG+RD YK+HF+H GTG V +G T Sbjct: 1 MKAFHYNSYRSSRDNPDFYLSYWGKEDCSPNHAFGPGIRDHYKVHFVHRGTGTVQIGSST 60 Query: 61 HMLQPGQAFLTYPHIVTHYAADMDQPWTYSWVAFTGEEIGYLLSKTSLSPEHPVFPMDDS 120 L GQAFL YP V Y AD PW+YSW+ F GE++G +L +T L+ E VFPMD Sbjct: 61 FKLTSGQAFLAYPGKVISYQADAFDPWSYSWIGFRGEQVGEVLERTKLTSEESVFPMDKQ 120 Query: 121 LMPALYDRLSAAADYKDSLDLPLKAIMYEFFGLLVRMVPAAAHPIPLPRQKSIYVEQCLH 180 MP LY+ L +AD+ + DL L +++ EF +L+ +P++A PR++ Y+ + L Sbjct: 121 FMPNLYELLLESADHPKNHDLRLTSLLIEFLTVLIDSLPSSADAGVQPRKQDTYIHRSLD 180 Query: 181 YLHAHYCENVTVECMSSSLKLDRKYLSALFKKTVGLPPQQYLLNFRIAKACELLTETPCT 240 ++H+H+ E +TV+ M++SL LDRKYLS LFK+ +GLPPQQYLLN+R+ +A ELL + + Sbjct: 181 FIHSHFSEPITVQQMAASLGLDRKYLSYLFKEAMGLPPQQYLLNYRMDRAGELLRKGEYS 240 Query: 241 IGEISRSVGYQDPLLFSRMFKKVKGCSPKEYR 272 IGE++RSVGYQD LLFS+MFKK+KG PK Y+ Sbjct: 241 IGEVARSVGYQDALLFSKMFKKLKGVPPKLYK 272 >B8D1C2.1 B8D1C2_HALOH Transcriptional regulator, AraC family Length = 276 Score = 208 bits (529), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 104/259 (40%), Positives = 158/259 (61%), Gaps = 5/259 (1%) Query: 17 DLHLHYWGREECAPGHSVGPGVRDLYKIHFIHAGTGRVTVGRETHMLQPGQAFLTYPHIV 76 D+ ++ G+E+C PGHS GP VRD Y IHFI+ G G VG T+ L+ GQ FL P IV Sbjct: 17 DIDIYQCGQEKCKPGHSYGPAVRDHYLIHFIYNGRGIFQVGENTYHLEAGQGFLICPDIV 76 Query: 77 THYAADMDQPWTYSWVAFTGEEIGYLLSKTSLSPEHPVFP-MDDSLMPALYDRLSAAADY 135 T+Y AD PW Y+W+ F G + L++ +LS +PVF D S + +++ ++AA Sbjct: 77 TYYQADRHNPWEYAWIGFHGLKAKDYLNRANLSLANPVFSDTDGSPLRFIFEEMTAARKL 136 Query: 136 KDSLDLPLKAIMYEFFGLLVRMVPAAAHPIPLPRQKSIYVEQCLHYLHAHYCENVTVECM 195 K S ++ L ++Y F L+ + + + P K Y+++ + Y+ +Y ++ V + Sbjct: 137 KRSREIKLIGLIYVFLSHLIELNVSGS--TPDNNSKENYIKKAIEYIEKNYSRHIKVIDI 194 Query: 196 SSSLKLDRKYLSALFKKTVGLPPQQYLLNFRIAKACELLTET--PCTIGEISRSVGYQDP 253 ++ + LDR YL ++F + + PQQYL+N+RI KACEL+ +IG+ISRSVGY+DP Sbjct: 195 ANHVGLDRSYLWSIFNEFLNTSPQQYLINYRINKACELMKNRNLNLSIGDISRSVGYKDP 254 Query: 254 LLFSRMFKKVKGCSPKEYR 272 L FS+ FKK KG SP Y+ Sbjct: 255 LTFSKTFKKTKGISPLHYQ 273 >B1DIH0.1 B1DIH0_9BACL Transcriptional regulator, AraC family Length = 284 Score = 207 bits (528), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 102/259 (39%), Positives = 155/259 (59%), Gaps = 3/259 (1%) Query: 17 DLHLHYWGREECAPGHSVGPGVRDLYKIHFIHAGTGRVTVGRETHMLQPGQAFLTYPHIV 76 DL L +WG+++C PGH GPG+RD+Y IH++H+GTG+ +G ++ L GQ FL P + Sbjct: 18 DLSLLFWGKQDCDPGHYWGPGLRDMYIIHYVHSGTGQFRLGELSYELHAGQGFLIIPGSL 77 Query: 77 THYAADMDQPWTYSWVAFTGEEIGYLLSKTSLSPEHPVFPMDD--SLMPALYDRL-SAAA 133 +Y AD D PWTYSWV G LL + LSP +P+F + ++Y++ A Sbjct: 78 VYYKADEDNPWTYSWVGLKGLHAKSLLQRAGLSPANPIFDATEQKDFFESVYEQCHQALE 137 Query: 134 DYKDSLDLPLKAIMYEFFGLLVRMVPAAAHPIPLPRQKSIYVEQCLHYLHAHYCENVTVE 193 D+ S DL ++++Y++ LV + P K Y+ + + ++ Y ++V+ Sbjct: 138 DHPGSGDLFSQSLLYQYMARLVACNKQPSAPAHAVNTKEAYINKAVAFIENSYSLPISVQ 197 Query: 194 CMSSSLKLDRKYLSALFKKTVGLPPQQYLLNFRIAKACELLTETPCTIGEISRSVGYQDP 253 +++ + LDR YLS LFK +G+ Q +LL FR+ +A ELL TIG+I+RSVGY DP Sbjct: 198 DIANFVGLDRTYLSGLFKAQLGVSLQAFLLRFRMNRAVELLHHQELTIGDIARSVGYTDP 257 Query: 254 LLFSRMFKKVKGCSPKEYR 272 LFS+MFK+V G SP+ R Sbjct: 258 FLFSKMFKRVIGSSPRTSR 276 >C4IHE3.1 C4IHE3_CLOBU Msm operon regulatory protein Length = 285 Score = 205 bits (522), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 97/261 (37%), Positives = 155/261 (59%), Gaps = 3/261 (1%) Query: 13 RGNPDLHLHYWGREECAPGHSVGPGVRDLYKIHFIHAGTGRVTVGRETHMLQPGQAFLTY 72 R + DL ++ GREEC P HS GP +RD + IH+I G+G V + + L Q F+ + Sbjct: 15 RESRDLLVYQCGREECTPSHSFGPAIRDHFLIHYIIEGSGTFLVNGKLYKLHKNQGFIIF 74 Query: 73 PHIVTHYAADMDQPWTYSWVAFTGEEIGYLLSKTSLSPEHPVFPM-DDSLMPALYDRLSA 131 P +T+Y AD PW Y WV F G + Y L L+ E+P+F +D + +D + Sbjct: 75 PDDITYYEADNHTPWIYKWVGFKGIKAEYYLQCAGLTKENPIFEYSNDKFLEECFDNMIK 134 Query: 132 AADYKDSLDLPLKAIMYEFFGLLVRMVPAAAHPIPLPRQKSIYVEQCLHYLHAHYCENVT 191 A+ K + +L L+ ++ F L+ + + K +Y+++CL+Y+ +Y + Sbjct: 135 ASKLKYASELKLQGLLSIFLSELIELSSIDSSS--DYYYKDVYIKKCLNYIEMNYSRKLL 192 Query: 192 VECMSSSLKLDRKYLSALFKKTVGLPPQQYLLNFRIAKACELLTETPCTIGEISRSVGYQ 251 + +++ L L+ KY S +FK+++G+ PQQY+++FR+ KACEL+ +I +ISRSVGY Sbjct: 193 ISEIAALLGLNTKYFSLIFKESIGVTPQQYIISFRVNKACELMKNFKLSICDISRSVGYD 252 Query: 252 DPLLFSRMFKKVKGCSPKEYR 272 D L FS++FKK KG SPK+YR Sbjct: 253 DSLAFSKIFKKQKGMSPKKYR 273 >C4IMA5.1 C4IMA5_CLOBU Transcriptional regulator, AraC family Length = 288 Score = 195 bits (495), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 91/259 (35%), Positives = 149/259 (57%), Gaps = 2/259 (0%) Query: 17 DLHLHYWGREECAPGHSVGPGVRDLYKIHFIHAGTGRVTVGRETHMLQPGQAFLTYPHIV 76 DL L Y+G E C+P HS GPGVR Y IH+I G G TV +T L Q FL P + Sbjct: 23 DLFLCYYGTENCSPNHSFGPGVRSQYLIHYILDGEGTYTVNNKTFKLGKNQGFLICPDTL 82 Query: 77 THYAADMDQPWTYSWVAFTGEEIGYLLSKTSLSPEHPVFPMD-DSLMPALYDRLSAAADY 135 HY AD ++PW Y W+AF G + L+ +L+ + +F D + ++ + + + Sbjct: 83 IHYEADAEKPWNYIWIAFNGLKAETYLNYANLNKNNVIFEYSKDDCLKDYFNEMLSVTEL 142 Query: 136 KDSLDLPLKAIMYEFFGLLVRMVPAAAHPIPLPRQKSIYVEQCLHYLHAHYCENVTVECM 195 S +L L+ ++Y F L + + + +Y+E+ + ++ +Y N+ + + Sbjct: 143 NYSTELKLEGLLYLFMSKLASSENSLNYSKKC-KTTDLYLEKSIDFIKDNYSTNIKINDI 201 Query: 196 SSSLKLDRKYLSALFKKTVGLPPQQYLLNFRIAKACELLTETPCTIGEISRSVGYQDPLL 255 ++ + ++R YL+ +FK + + PQ++L++FRI KACELL + +I ++ SVGY DPL Sbjct: 202 ANYIGINRSYLTNIFKNNIHVSPQEFLVDFRIDKACELLKSSNSSIKSVANSVGYSDPLT 261 Query: 256 FSRMFKKVKGCSPKEYRIR 274 FS++FKK+KG SPK YR + Sbjct: 262 FSKIFKKLKGESPKNYRNK 280 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.139 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,770,421,423 Number of extensions: 73699021 Number of successful extensions: 160194 Number of sequences better than 1.0e-05: 3873 Number of HSP's gapped: 159706 Number of HSP's successfully gapped: 3874 Length of query: 282 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 148 Effective length of database: 1,798,280,193 Effective search space: 266145468564 Effective search space used: 266145468564 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)