BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0383.0002.p (355 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K3B1.1 B3K3B1_9BACI Chorismate synthase EC=4.2.3.5 588 e-166 B1D7M7.1 B1D7M7_9BACL Chorismate synthase EC=4.2.3.5 513 e-143 B8FFQ6.1 AROC_DESAA Chorismate synthase EC=4.2.3.5 382 e-104 C1SJF1.1 C1SJF1_9BACT Chorismate synthase EC=4.2.3.5 374 e-102 Q5QW40.1 AROC_IDILO Chorismate synthase EC=4.2.3.5 372 e-101 >B3K3B1.1 B3K3B1_9BACI Chorismate synthase EC=4.2.3.5 Length = 352 Score = 588 bits (1517), Expect = e-166, Method: Compositional matrix adjust. Identities = 292/352 (82%), Positives = 313/352 (88%) Query: 1 MAGSTFGERLKVTTFGESHGEAVGAIVEGVTPGVELDEAYIQVQMDRRRPGQSSVTTPRK 60 MAGSTFGERLK+T+FGESHGEAVG I+EGVTPGVELDEAYIQ+QMDRRRPGQSSVTTPRK Sbjct: 1 MAGSTFGERLKMTSFGESHGEAVGVILEGVTPGVELDEAYIQIQMDRRRPGQSSVTTPRK 60 Query: 61 EYDKIRILSGLFEGRTTGTPLCIMLDNTDMRPSAYDDIKSMYRPGHADFTYEKKYGVRDY 120 EYDKIRI+SGLFEG+TTGTPLCIML+NTDMRPSAYD IKS YRPGHADFTYEKKYG+RDY Sbjct: 61 EYDKIRIVSGLFEGKTTGTPLCIMLNNTDMRPSAYDTIKSAYRPGHADFTYEKKYGIRDY 120 Query: 121 RGSGRASGRETXXXXXXXXXXXKLLEHRNVKVLAYTTEIGGIRCGTFDPEVIESNVVRAC 180 RGSGRASGRET KLLE R V +LAYTTEIGGIRC FD + IE N VRAC Sbjct: 121 RGSGRASGRETAARVAAGAVARKLLERRGVSILAYTTEIGGIRCEQFDVDAIERNAVRAC 180 Query: 181 DPAAAERMIKRIEELAAKGDSCGGIVGCRISGVPAGLGEPVFDKLDAELAKAMLSIGAVK 240 DP AA RMI+RIE LA +GDSCGGIV CRISG+ AGLGEPVFDKLDAELAKAMLS+GA+K Sbjct: 181 DPEAAVRMIERIERLAEEGDSCGGIVECRISGIAAGLGEPVFDKLDAELAKAMLSVGAIK 240 Query: 241 GIEFGAGFQAAAMLGSEHNDQMDASGFQTNHAGGVIGGISTGADIVFRVAVKPTSSISVP 300 GIEFG GFQAA+M GSEHNDQMDA GF+TNHAGG+IGGISTGADIVFRV VKPTSSIS+P Sbjct: 241 GIEFGTGFQAASMRGSEHNDQMDAEGFRTNHAGGIIGGISTGADIVFRVVVKPTSSISIP 300 Query: 301 QRTIDTGGNEREIVTKGRHDPCICPRVVPVIEAMACLVIEDHYKRQAALLDN 352 QRT+D GNEREI T GRHDPCICPRVVPVIEAMAC+VIEDHYKRQAAL D Sbjct: 301 QRTVDVEGNEREITTIGRHDPCICPRVVPVIEAMACMVIEDHYKRQAALHDE 352 >B1D7M7.1 B1D7M7_9BACL Chorismate synthase EC=4.2.3.5 Length = 351 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 246/351 (70%), Positives = 286/351 (81%) Query: 1 MAGSTFGERLKVTTFGESHGEAVGAIVEGVTPGVELDEAYIQVQMDRRRPGQSSVTTPRK 60 M+GS+FG K+TTFGESHGEAVG I++GVTPGVEL EA IQVQMDRR+PGQSSVTTPRK Sbjct: 1 MSGSSFGTHFKMTTFGESHGEAVGVIIDGVTPGVELTEADIQVQMDRRKPGQSSVTTPRK 60 Query: 61 EYDKIRILSGLFEGRTTGTPLCIMLDNTDMRPSAYDDIKSMYRPGHADFTYEKKYGVRDY 120 EYD IRILSG+FEG+TTG PL +ML+NTDM+ Y+ + ++RPGHADFTY +KYG RD+ Sbjct: 61 EYDIIRILSGVFEGKTTGAPLAVMLNNTDMKSKDYEANRKLFRPGHADFTYVQKYGHRDH 120 Query: 121 RGSGRASGRETXXXXXXXXXXXKLLEHRNVKVLAYTTEIGGIRCGTFDPEVIESNVVRAC 180 RGSGRASGRET KLLE R V ++AYT E GGI+C TFD VIE N +RA Sbjct: 121 RGSGRASGRETAGRVAAGAIARKLLERRGVSIVAYTKEAGGIKCETFDESVIEKNPMRAA 180 Query: 181 DPAAAERMIKRIEELAAKGDSCGGIVGCRISGVPAGLGEPVFDKLDAELAKAMLSIGAVK 240 D AAERM+ +E+LAAKG+SCGG+V C I GV G+GEP FDKLDAELAKAMLSIGAVK Sbjct: 181 DLNAAERMVTLVEDLAAKGNSCGGVVECIIRGVKPGIGEPAFDKLDAELAKAMLSIGAVK 240 Query: 241 GIEFGAGFQAAAMLGSEHNDQMDASGFQTNHAGGVIGGISTGADIVFRVAVKPTSSISVP 300 G+EFGAGF A M GSEHND+MDA+GF TN+AGG++GGISTG DIVFR+AVKPTSSIS+P Sbjct: 241 GVEFGAGFAATTMFGSEHNDEMDANGFLTNNAGGIVGGISTGQDIVFRIAVKPTSSISLP 300 Query: 301 QRTIDTGGNEREIVTKGRHDPCICPRVVPVIEAMACLVIEDHYKRQAALLD 351 Q+T+D GNE I T GRHDPCICPRVVPV+EAMAC+V+ED YKR AL D Sbjct: 301 QQTVDEEGNEHTIQTLGRHDPCICPRVVPVVEAMACMVLEDLYKRHTALHD 351 >B8FFQ6.1 AROC_DESAA Chorismate synthase EC=4.2.3.5 Length = 358 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 189/349 (54%), Positives = 240/349 (68%) Query: 1 MAGSTFGERLKVTTFGESHGEAVGAIVEGVTPGVELDEAYIQVQMDRRRPGQSSVTTPRK 60 M+G+TFG+ +VTT+GESHG AVGA+V+G PG+ L E IQV MDRR+PG S+ +T RK Sbjct: 1 MSGNTFGKAFRVTTWGESHGPAVGAVVDGCPPGIPLTEEAIQVMMDRRKPGSSAASTTRK 60 Query: 61 EYDKIRILSGLFEGRTTGTPLCIMLDNTDMRPSAYDDIKSMYRPGHADFTYEKKYGVRDY 120 E D + ILSG+FEG TTGTP+ +M+ N D + S+YD K+++RPGH D +Y++KYG+RDY Sbjct: 61 EEDLVHILSGVFEGLTTGTPISLMIKNKDAKSSSYDQFKNLFRPGHGDLSYQRKYGIRDY 120 Query: 121 RGSGRASGRETXXXXXXXXXXXKLLEHRNVKVLAYTTEIGGIRCGTFDPEVIESNVVRAC 180 +G GRAS RET LLE +K AYT E+G +R DPE + N Sbjct: 121 KGGGRASARETAGRVAAGAVAGLLLERVGIKTFAYTLELGSVRAKNIDPEAVSKNPFACP 180 Query: 181 DPAAAERMIKRIEELAAKGDSCGGIVGCRISGVPAGLGEPVFDKLDAELAKAMLSIGAVK 240 D AAE+M R+ E+ GDS GGIV + +GVPAGLGEPVFDKLDA++AKAM+SIGAVK Sbjct: 181 DMEAAEKMEARVNEVRKDGDSLGGIVQVQAAGVPAGLGEPVFDKLDAQIAKAMMSIGAVK 240 Query: 241 GIEFGAGFQAAAMLGSEHNDQMDASGFQTNHAGGVIGGISTGADIVFRVAVKPTSSISVP 300 G+E GAGF+AA + GS +ND + GF+TN+AGG + G+S+G DIV RVAVKP SISVP Sbjct: 241 GVEIGAGFEAARLTGSVNNDPILEDGFETNNAGGTLSGVSSGQDIVVRVAVKPIPSISVP 300 Query: 301 QRTIDTGGNEREIVTKGRHDPCICPRVVPVIEAMACLVIEDHYKRQAAL 349 Q+TI G I GRHD PRV V EAM LV+ D RQA + Sbjct: 301 QQTIGLDGKADTIQVGGRHDISAIPRVNVVCEAMLNLVLADFVLRQAQV 349 >C1SJF1.1 C1SJF1_9BACT Chorismate synthase EC=4.2.3.5 Length = 356 Score = 374 bits (960), Expect = e-102, Method: Compositional matrix adjust. Identities = 179/353 (50%), Positives = 243/353 (68%) Query: 1 MAGSTFGERLKVTTFGESHGEAVGAIVEGVTPGVELDEAYIQVQMDRRRPGQSSVTTPRK 60 MAGSTFG +TTFGESHG+AVG +++G P +EL +Q ++DRRRPGQS V+TPR Sbjct: 1 MAGSTFGTNFTITTFGESHGKAVGVVLDGCPPMIELSVEDVQKELDRRRPGQSKVSTPRD 60 Query: 61 EYDKIRILSGLFEGRTTGTPLCIMLDNTDMRPSAYDDIKSMYRPGHADFTYEKKYGVRDY 120 E D + I SG+FEG+TTGTP+ +M+ N + Y+ +K ++RPGHADFTY KYGVRD+ Sbjct: 61 ESDTVEIYSGIFEGKTTGTPIMMMVFNKNQMSRDYNAVKDLFRPGHADFTYYSKYGVRDH 120 Query: 121 RGSGRASGRETXXXXXXXXXXXKLLEHRNVKVLAYTTEIGGIRCGTFDPEVIESNVVRAC 180 RG GR+S RET K+L V + AY ++G + D ++E N++R C Sbjct: 121 RGGGRSSARETIGRVCAGAVAKKILSRSGVTIQAYVIQVGPHKAEKRDLGIVEENIIRTC 180 Query: 181 DPAAAERMIKRIEELAAKGDSCGGIVGCRISGVPAGLGEPVFDKLDAELAKAMLSIGAVK 240 D AA++M + I E GDS G IV + GVP G+GEPVFD+L+A ++ A++SI AVK Sbjct: 181 DLDAAKKMEEYIVEAKEAGDSVGAIVEVIVKGVPVGVGEPVFDRLNALISHAIMSIPAVK 240 Query: 241 GIEFGAGFQAAAMLGSEHNDQMDASGFQTNHAGGVIGGISTGADIVFRVAVKPTSSISVP 300 GIEFG GF+AA M GSEHND+M GF +N+AGG +GG+++G DI+FR VKP SSI+VP Sbjct: 241 GIEFGKGFEAALMRGSEHNDEMIKYGFLSNNAGGTLGGMASGQDIIFRFVVKPASSITVP 300 Query: 301 QRTIDTGGNEREIVTKGRHDPCICPRVVPVIEAMACLVIEDHYKRQAALLDNF 353 ++ ID GNE+ ++T+GRHDPC+ PRVVPV EAM +V+ D A+ + F Sbjct: 301 RKGIDLYGNEKTVITEGRHDPCVAPRVVPVAEAMTGVVLVDLIMSDKAIANYF 353 >Q5QW40.1 AROC_IDILO Chorismate synthase EC=4.2.3.5 Length = 362 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 177/348 (50%), Positives = 240/348 (68%) Query: 1 MAGSTFGERLKVTTFGESHGEAVGAIVEGVTPGVELDEAYIQVQMDRRRPGQSSVTTPRK 60 M G++FG+ K+TTFGESHG ++GA+V+G G+EL EA +Q +DRR+PGQ+ TT R+ Sbjct: 1 MPGNSFGQLFKITTFGESHGPSLGAVVDGCPAGLELTEADLQEALDRRKPGQNRYTTARR 60 Query: 61 EYDKIRILSGLFEGRTTGTPLCIMLDNTDMRPSAYDDIKSMYRPGHADFTYEKKYGVRDY 120 E D+++ILSG+FEG TTGT + ++++NTD R Y DIK +RPGHAD+TY+ KYGVRDY Sbjct: 61 EADQVKILSGVFEGVTTGTSIGLLIENTDQRSQDYSDIKDTFRPGHADYTYQHKYGVRDY 120 Query: 121 RGSGRASGRETXXXXXXXXXXXKLLEHRNVKVLAYTTEIGGIRCGTFDPEVIESNVVRAC 180 RG GR+S RET KLL + ++V A T++G + D + + N + Sbjct: 121 RGGGRSSARETAMRVAAGAIADKLLRQQGIQVQAALTQMGDVVASNIDWQQVRENELFCG 180 Query: 181 DPAAAERMIKRIEELAAKGDSCGGIVGCRISGVPAGLGEPVFDKLDAELAKAMLSIGAVK 240 D A E M + I +L +GDS G + + +GVP G GEPVFD+LDA+LAKA++SI AVK Sbjct: 181 DANAVEAMQELIRQLKKEGDSIGAKIRVQATGVPPGWGEPVFDRLDADLAKALMSINAVK 240 Query: 241 GIEFGAGFQAAAMLGSEHNDQMDASGFQTNHAGGVIGGISTGADIVFRVAVKPTSSISVP 300 + G GF+ + GSEH D+M GF +NHAGGV+GGIS+G I +A+KPTSSI++ Sbjct: 241 AVSVGDGFEVVSQRGSEHRDEMTPDGFLSNHAGGVLGGISSGQPIFADIALKPTSSIAIS 300 Query: 301 QRTIDTGGNEREIVTKGRHDPCICPRVVPVIEAMACLVIEDHYKRQAA 348 RTID GNE+ IVTKGRHDPC+ R VP++EAM LV+ DH+ RQ A Sbjct: 301 GRTIDRWGNEQAIVTKGRHDPCVGIRAVPIVEAMTSLVLADHWLRQRA 348 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,122,562,881 Number of extensions: 88899663 Number of successful extensions: 202188 Number of sequences better than 1.0e-05: 1649 Number of HSP's gapped: 196685 Number of HSP's successfully gapped: 1681 Length of query: 355 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 218 Effective length of database: 1,770,017,148 Effective search space: 385863738264 Effective search space used: 385863738264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)