BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0382.0019.p
         (128 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B2TJQ1.1 B2TJQ1_CLOBB Transcriptional regulator                       120   4e-26
B8I1J2.1 B8I1J2_CLOCE Transcriptional regulator, MerR family          115   1e-24
B2V559.1 B2V559_CLOBA Transcriptional regulator, MerR family          113   6e-24
Q65IX7.1 Q65IX7_BACLD Putative uncharacterized protein                112   9e-24
Q5WJ09.1 Q5WJ09_BACSK Putative uncharacterized protein                110   6e-23

>B2TJQ1.1 B2TJQ1_CLOBB Transcriptional regulator
          Length = 124

 Score =  120 bits (301), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 52/114 (45%), Positives = 84/114 (73%)

Query: 1   MGYSIKTIAQKSGLSQYTLRYYEREGVLPVVARDEHGNRCFHDEDLELISLICCLKDTGM 60
           M Y+IK +A+K  LS +TLRYYE+EG+LP + R++ GNR F D+DLE +++ICCLK+T M
Sbjct: 1   MPYTIKEVAEKYNLSVHTLRYYEKEGLLPFIERNKQGNRIFSDKDLEWLNIICCLKNTNM 60

Query: 61  PIAEIKQFIALSREGVEALPDQRKLLQAHKLQIDEKIKFFQSFAQKIEHKIAYF 114
           PIA+IK+++ L  EG E +  +  +L  HK+ I+ +I+ F S+ + +++KI ++
Sbjct: 61  PIAKIKEYVDLCIEGPETICKREDMLLKHKIYIESEIENFNSYLRVVDNKINHY 114


>B8I1J2.1 B8I1J2_CLOCE Transcriptional regulator, MerR family
          Length = 124

 Score =  115 bits (288), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/116 (44%), Positives = 79/116 (68%)

Query: 1   MGYSIKTIAQKSGLSQYTLRYYEREGVLPVVARDEHGNRCFHDEDLELISLICCLKDTGM 60
           M YSIK +++K+ L  + LRYYEREG+LP ++R E G R + +EDLE + L+CCLK+TGM
Sbjct: 1   MDYSIKQVSEKTNLKAHVLRYYEREGLLPDISRSESGIRRYSEEDLEWLGLVCCLKNTGM 60

Query: 61  PIAEIKQFIALSREGVEALPDQRKLLQAHKLQIDEKIKFFQSFAQKIEHKIAYFAS 116
            I +I+ F+ALS +G E L  +  +L  H+  ++ +I+   +  +K+ HKI YF S
Sbjct: 61  SIKQIRDFVALSAQGKETLRQRCDMLIEHRKNVESQIEEMHNHLKKVTHKIEYFTS 116


>B2V559.1 B2V559_CLOBA Transcriptional regulator, MerR family
          Length = 124

 Score =  113 bits (282), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 50/114 (43%), Positives = 82/114 (71%)

Query: 1   MGYSIKTIAQKSGLSQYTLRYYEREGVLPVVARDEHGNRCFHDEDLELISLICCLKDTGM 60
           M Y+IK +A+K  LS +TLRYYE+EG+LP + R++  +R F+D+DLE +++ICCLK+T M
Sbjct: 1   MPYTIKEVAEKYNLSVHTLRYYEKEGLLPFIERNKQSHRIFNDKDLEWLNIICCLKNTNM 60

Query: 61  PIAEIKQFIALSREGVEALPDQRKLLQAHKLQIDEKIKFFQSFAQKIEHKIAYF 114
           PIA+IK+++ L  EG E +  + ++L  HK  I+ +I  F S+ + ++ KI ++
Sbjct: 61  PIAKIKEYVDLCIEGPETICKREEILLKHKKYIESEIDNFNSYLRVVDDKINHY 114


>Q65IX7.1 Q65IX7_BACLD Putative uncharacterized protein
          Length = 131

 Score =  112 bits (281), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 86/127 (67%)

Query: 1   MGYSIKTIAQKSGLSQYTLRYYEREGVLPVVARDEHGNRCFHDEDLELISLICCLKDTGM 60
           MGYSIK +A+K GL  +TLRYYE+EG+LP + RD +GNR F ++DL  + L+ CL+ T +
Sbjct: 1   MGYSIKEVAEKVGLPTHTLRYYEKEGLLPFIKRDANGNRIFEEKDLSWLELVICLRKTDI 60

Query: 61  PIAEIKQFIALSREGVEALPDQRKLLQAHKLQIDEKIKFFQSFAQKIEHKIAYFASLERE 120
            ++E+++ + L++EG   +  ++++L+ HK ++ EK +  +    KI+ KI Y+  LE++
Sbjct: 61  ALSELREIVNLTKEGDWTISKRKQILEKHKEKMLEKQRVLERAFLKIDEKIMYYDGLEKK 120

Query: 121 AQERAAK 127
            Q  + K
Sbjct: 121 NQAMSLK 127


>Q5WJ09.1 Q5WJ09_BACSK Putative uncharacterized protein
          Length = 148

 Score =  110 bits (274), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 84/124 (67%), Gaps = 1/124 (0%)

Query: 1   MGYSIKTIAQKSGLSQYTLRYYEREGVLPVVARDEHGNRCFHDEDLELISLICCLKDTGM 60
           + YSI  +A K GLS +TLR+Y++EG++P + RD+ GNR F D DL  ++++CCLKDTGM
Sbjct: 18  LNYSINEVASKFGLSAHTLRFYDKEGLMPFIGRDKSGNRVFTDTDLNWVAMVCCLKDTGM 77

Query: 61  PIAEIKQFIALSREGVEALPDQRKLLQAHKLQIDEKIKFFQSFAQKIEHKIAYFASLERE 120
            I +IKQ+     EG++ + +++ +L  H+ Q+ ++++  +     I+ KIA + + E E
Sbjct: 78  KIKDIKQYADWCTEGLQTIEERKTMLADHRQQVVKQMEALKKNLALIDSKIAVYENPE-E 136

Query: 121 AQER 124
           A+++
Sbjct: 137 AEKK 140


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.136    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 688,130,713
Number of extensions: 25175279
Number of successful extensions: 74764
Number of sequences better than 1.0e-05: 862
Number of HSP's gapped: 75231
Number of HSP's successfully gapped: 862
Length of query: 128
Length of database: 3,060,696,203
Length adjustment: 93
Effective length of query: 35
Effective length of database: 2,184,541,808
Effective search space: 76458963280
Effective search space used: 76458963280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)