BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0382.0018.p (343 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D9U5.1 B1D9U5_9BACL Binding-protein-dependent transport system... 350 1e-94 A9KJS7.1 A9KJS7_CLOPH Binding-protein-dependent transport system... 310 1e-82 B1D571.1 B1D571_9BACL Binding-protein-dependent transport system... 309 2e-82 B1DDD0.1 B1DDD0_9BACL Binding-protein-dependent transport system... 296 2e-78 C4IBC6.1 C4IBC6_CLOBU ABC transporter membrane-spanning permease... 278 7e-73 >B1D9U5.1 B1D9U5_9BACL Binding-protein-dependent transport systems inner membrane component Length = 303 Score = 350 bits (898), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 183/301 (60%), Positives = 229/301 (76%), Gaps = 1/301 (0%) Query: 43 FLHELVHNRVXXXXXXXXXXXXXVNSYFPMVGVYYAFTQFDFNSGMFDAPFVGFKNFEFL 102 F ELV NR+ V +Y PMVGVYYAFT+F F+ G+F F+GFKNFEFL Sbjct: 4 FFQELVRNRILFLMIAPALLFFIVFAYVPMVGVYYAFTRFSFDGGLFGGEFIGFKNFEFL 63 Query: 103 WKSGTLVKLTLNTIGYNLAFILLGNVLAIVCAILLSELRVKWFKKLTQSIMFLPYFVSFV 162 + SG L LT NT+ YN+AFI++ NVL + CAI LSEL KWFKK TQSIMFLP+FVSFV Sbjct: 64 FNSGVLWNLTKNTVLYNIAFIIISNVLQLACAIFLSELPGKWFKKSTQSIMFLPFFVSFV 123 Query: 163 ILSVIVYNVFNYDNGFLNTLLAQFGAGPVDVYNKPGVWIFLIIVFYLWKNLGYSMVIYLA 222 ++ V+N+F+ + G +NT+L G P D Y W ++I+ F++WK LGY VIYLA Sbjct: 124 LVGAFVFNLFS-NAGVVNTMLTSLGLQPYDFYLHTAPWKYIIVFFHVWKGLGYGTVIYLA 182 Query: 223 SITGISDEYYEAAKIDGAHIFQRIWYITVPMLKSTFIVLLLFSLGSIMKGQFDLFYQLIG 282 +I +SDEY+EAAKIDGA+IF+R+ +IT+P+L TFI+L+L SLG I+KGQFDLFYQ+IG Sbjct: 183 AIMSVSDEYHEAAKIDGANIFKRVRHITLPLLVPTFILLILLSLGGILKGQFDLFYQIIG 242 Query: 283 NNGVLYNTTDILDTYVFRSLKVTFDIGMATAAGLYQSLFGFILIMTVNYIIRKINDDYAL 342 NNG+LYN+TDI+DTYV+RSL V FDIGM TAAGLYQSLFGF+LI+ VNYIIRK+ DYAL Sbjct: 243 NNGMLYNSTDIIDTYVYRSLAVNFDIGMGTAAGLYQSLFGFVLIILVNYIIRKVQKDYAL 302 Query: 343 F 343 F Sbjct: 303 F 303 >A9KJS7.1 A9KJS7_CLOPH Binding-protein-dependent transport systems inner membrane component Length = 288 Score = 310 bits (795), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 148/276 (53%), Positives = 206/276 (74%) Query: 68 SYFPMVGVYYAFTQFDFNSGMFDAPFVGFKNFEFLWKSGTLVKLTLNTIGYNLAFILLGN 127 SY M G Y AF ++ N G+F + FVGFKNFEFL K+G L ++T NT+ YN+ F++L + Sbjct: 13 SYVTMPGAYVAFVNYNPNKGIFKSDFVGFKNFEFLIKNGDLWRITKNTLLYNIVFLILSH 72 Query: 128 VLAIVCAILLSELRVKWFKKLTQSIMFLPYFVSFVILSVIVYNVFNYDNGFLNTLLAQFG 187 L I+ AI+LSE+ K+FKK++QS++ LP+F+S+V++ V YN FN+DNGF+N++L G Sbjct: 73 SLQIILAIMLSEIMNKYFKKISQSVILLPHFISYVVVGVFAYNFFNFDNGFINSILVNLG 132 Query: 188 AGPVDVYNKPGVWIFLIIVFYLWKNLGYSMVIYLASITGISDEYYEAAKIDGAHIFQRIW 247 Y+ PG+W ++I+ FY+WK GY M++YLA+ITGIS E YEAA IDGA FQRI Sbjct: 133 MERFPFYSNPGIWKYIIVFFYIWKTTGYGMIVYLAAITGISGEVYEAAYIDGASRFQRIC 192 Query: 248 YITVPMLKSTFIVLLLFSLGSIMKGQFDLFYQLIGNNGVLYNTTDILDTYVFRSLKVTFD 307 Y+T+P+LK TF++L+LF LG I++G FDLFY LIG N +LY TDI+DTYV+RSL +F+ Sbjct: 193 YVTIPLLKQTFVLLVLFGLGGILRGSFDLFYNLIGTNSLLYRQTDIIDTYVYRSLIGSFN 252 Query: 308 IGMATAAGLYQSLFGFILIMTVNYIIRKINDDYALF 343 + A GLYQS+FG IL++T+N I+RKI + ALF Sbjct: 253 FASSAAVGLYQSVFGLILVLTINLIVRKIEPESALF 288 >B1D571.1 B1D571_9BACL Binding-protein-dependent transport systems inner membrane component Length = 321 Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 148/277 (53%), Positives = 207/277 (74%), Gaps = 1/277 (0%) Query: 68 SYFPMVGVYYAFTQFDFNSGMFDAPFVGFKNFEFLWKSGTLVKLTLNTIGYNLAFILLGN 127 +Y PM GVY AF Q+++ G+F +PFV F NF FL +G L +LT NT+ YN+AFILLGN Sbjct: 45 AYLPMPGVYLAFIQYNYADGIFKSPFVAFDNFRFLVMNGDLWRLTFNTVAYNVAFILLGN 104 Query: 128 VLAIVCAILLSELRVKWFKKLTQSIMFLPYFVSFVILSVIVYNVFNYDNGFLNTLLAQFG 187 +L I AILL+ELR KWFKK+ Q+++FLP+F+S V++ +I YN+ +YD G LN LLA G Sbjct: 105 LLQIFVAILLNELRRKWFKKVAQTLLFLPHFISAVLIGLIAYNILSYDYGLLNHLLASIG 164 Query: 188 AGPVDVYNKPGVWIFLIIVFYLWKNLGYSMVIYLASITGISDEYYEAAKIDGAHIFQRIW 247 PV VY+ VW F+I++ YLW++ GY ++Y A+I G+ +E EA++IDGA+ FQRI Sbjct: 165 MDPVKVYSNSHVWPFIIVITYLWQSTGYGSIVYFAAIMGLDNEIIEASEIDGANAFQRII 224 Query: 248 YITVPMLKSTFIVLLLFSLGSIMKGQFDLFYQLIG-NNGVLYNTTDILDTYVFRSLKVTF 306 YI +P LK TFI+LLLFSLG IMKG F LFY L+G NN LY++TDI++TYVFRSL F Sbjct: 225 YIVIPWLKPTFIILLLFSLGGIMKGNFGLFYNLVGANNTALYSSTDIIETYVFRSLMTNF 284 Query: 307 DIGMATAAGLYQSLFGFILIMTVNYIIRKINDDYALF 343 + + +A LYQS+FGF++++T N++++K + + +LF Sbjct: 285 NFSIGSAVSLYQSVFGFVIVITANWLVKKASPENSLF 321 >B1DDD0.1 B1DDD0_9BACL Binding-protein-dependent transport systems inner membrane component Length = 306 Score = 296 bits (758), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 140/276 (50%), Positives = 199/276 (72%) Query: 68 SYFPMVGVYYAFTQFDFNSGMFDAPFVGFKNFEFLWKSGTLVKLTLNTIGYNLAFILLGN 127 +Y PM G+ AF Q++ G+F +P+ G NF F ++SG +T NT YN+AFI++ N Sbjct: 31 AYVPMAGIVLAFKQYNNTGGIFGSPWNGISNFRFFFESGNAWMVTRNTALYNIAFIIVNN 90 Query: 128 VLAIVCAILLSELRVKWFKKLTQSIMFLPYFVSFVILSVIVYNVFNYDNGFLNTLLAQFG 187 VL I AI L E KWF+KLTQ+++FLPYF+S+V++ I YN+FNYD G LN LL G Sbjct: 91 VLQIAAAIFLFEAVGKWFRKLTQTMLFLPYFISWVVVGAIAYNLFNYDVGTLNVLLKAVG 150 Query: 188 AGPVDVYNKPGVWIFLIIVFYLWKNLGYSMVIYLASITGISDEYYEAAKIDGAHIFQRIW 247 PVD+YN P W ++++ WK LGY V+YLA+ITGI +E YEAA+IDGA++FQRIW Sbjct: 151 MQPVDIYNTPSYWPVILVLVSAWKTLGYGSVMYLAAITGIDNEMYEAAEIDGANVFQRIW 210 Query: 248 YITVPMLKSTFIVLLLFSLGSIMKGQFDLFYQLIGNNGVLYNTTDILDTYVFRSLKVTFD 307 IT+P L T I+L+L ++G+I +G F +FY ++GNNG+L+++TD++DT+VFRSL + + Sbjct: 211 RITLPNLFPTVIILVLLAVGNIFRGDFGMFYNMVGNNGLLFSSTDVIDTFVFRSLTTSNE 270 Query: 308 IGMATAAGLYQSLFGFILIMTVNYIIRKINDDYALF 343 IG++ AAG YQS+ GF I+ NY +RK + D+ALF Sbjct: 271 IGLSAAAGFYQSVLGFATILLANYAVRKYDKDHALF 306 >C4IBC6.1 C4IBC6_CLOBU ABC transporter membrane-spanning permease-sugar transport Length = 326 Score = 278 bits (710), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 138/301 (45%), Positives = 204/301 (67%) Query: 43 FLHELVHNRVXXXXXXXXXXXXXVNSYFPMVGVYYAFTQFDFNSGMFDAPFVGFKNFEFL 102 F+ + N+V + SY PM G AF ++F G+F +P+VG NF++ Sbjct: 26 FMLTIRRNKVLILMLLPAILYFLIFSYIPMGGTILAFKNYNFRDGIFGSPWVGLDNFKYF 85 Query: 103 WKSGTLVKLTLNTIGYNLAFILLGNVLAIVCAILLSELRVKWFKKLTQSIMFLPYFVSFV 162 + SG +T NTI YN+AFI + +L + AIL+SE+ K+FKKLTQ+ MFLPYF+S+V Sbjct: 86 FISGQAWIVTRNTILYNVAFITVNTILQMGLAILISEIGGKYFKKLTQTAMFLPYFISWV 145 Query: 163 ILSVIVYNVFNYDNGFLNTLLAQFGAGPVDVYNKPGVWIFLIIVFYLWKNLGYSMVIYLA 222 ++ +I YN+ N +NG +N+++A+ G + Y VW F++I WKN+GY V+YLA Sbjct: 146 VVGIIAYNMLNLENGTINSMIAKIGGEKFNFYGSTFVWPFIMIFVSAWKNVGYGTVLYLA 205 Query: 223 SITGISDEYYEAAKIDGAHIFQRIWYITVPMLKSTFIVLLLFSLGSIMKGQFDLFYQLIG 282 +I GI E YEAAKIDGA+IFQRI+ +T+P L T I+L L ++G+I +G F +FYQ+IG Sbjct: 206 AIMGIDTETYEAAKIDGANIFQRIFKVTIPSLIPTMIILTLLAIGNIFRGDFQMFYQIIG 265 Query: 283 NNGVLYNTTDILDTYVFRSLKVTFDIGMATAAGLYQSLFGFILIMTVNYIIRKINDDYAL 342 NNG L+N TD++DT+ FRSL + ++GM+ A+ LYQS+F FI IM N++++K + DY+L Sbjct: 266 NNGPLFNATDVIDTFTFRSLIQSGEVGMSAASCLYQSVFCFITIMISNFLVKKYDKDYSL 325 Query: 343 F 343 F Sbjct: 326 F 326 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.145 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,814,453,826 Number of extensions: 69730435 Number of successful extensions: 252479 Number of sequences better than 1.0e-05: 5349 Number of HSP's gapped: 248288 Number of HSP's successfully gapped: 5349 Length of query: 343 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 207 Effective length of database: 1,779,438,163 Effective search space: 368343699741 Effective search space used: 368343699741 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)