BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0382.0017.p (305 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C4IBC5.1 C4IBC5_CLOBU Protein LplC 305 2e-81 B1D9U6.1 B1D9U6_9BACL Binding-protein-dependent transport system... 305 4e-81 B1D570.1 B1D570_9BACL Binding-protein-dependent transport system... 295 3e-78 A9KJS8.1 A9KJS8_CLOPH Binding-protein-dependent transport system... 285 3e-75 C4G755.1 C4G755_ABIDE Putative uncharacterized protein 271 5e-71 >C4IBC5.1 C4IBC5_CLOBU Protein LplC Length = 296 Score = 305 bits (782), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 148/296 (50%), Positives = 204/296 (68%), Gaps = 3/296 (1%) Query: 11 IKDDHYTRLLQGLAYTVIILGSLACLVPFLLIISASLTANDSIIKDGYHLIPAQFSLEGY 70 +K ++ ++YTVI + SL CL+PFLL++ S+T II+ G+ L P FSLE Y Sbjct: 1 MKKGRDVKVFNTISYTVIAVISLLCLIPFLLVLMGSITDEQEIIQSGFSLFPNSFSLEAY 60 Query: 71 KTVFTFPDEVLRAYXXXXXXXXXXXXXXXXXXXXAGYVLARKDFKYRNTFSFYIYFTTLF 130 +T P ++RAY GYVL RKDFK+RN FSF+ YFTTLF Sbjct: 61 RTALKDPMAIVRAYGVTISLTVIGTILGLFIVAMTGYVLQRKDFKWRNKFSFFFYFTTLF 120 Query: 131 GGGLVPWYIMMTKYLHLTDSYGALIFPGLMTPFLIILMKNFIRSAVPEELFESAKIDGAG 190 GGLVPWYI+M +YL L DSY A++ P L++ F IILMK+++ S +P+ L E+AKIDGAG Sbjct: 121 SGGLVPWYILMVRYLDLKDSYLAMLLPPLLSVFNIILMKSYLNS-IPQSLIEAAKIDGAG 179 Query: 191 DFKIYWRIVLQLSMPGIATVGLFLALAYWNDWFSSSLFINDPHKYQLQFHLYNVINSAAF 250 DF+I+ +++L LS P +ATVGLF+A+ YWNDW++ LFIN+ Y LQ++LY ++N+ Sbjct: 180 DFQIFMKVILPLSKPALATVGLFIAIGYWNDWYNCMLFINNEKLYSLQYYLYKIVNNVEA 239 Query: 251 IANMGAGTGVSLGS--DLPTESTKMAMAIIVTGPILFLYPFIQRYFVKGLTIGAVK 304 + + TG S+G+ D+P+ES KMA+ IIVTGPI+ LYPFIQ+YFV+G+TIGAVK Sbjct: 240 YKTILSQTGGSIGAAIDMPSESLKMALTIIVTGPIILLYPFIQKYFVQGVTIGAVK 295 >B1D9U6.1 B1D9U6_9BACL Binding-protein-dependent transport systems inner membrane component Length = 295 Score = 305 bits (781), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 154/297 (51%), Positives = 202/297 (68%), Gaps = 2/297 (0%) Query: 9 MHIKDDHYTRLLQGLAYTVIILGSLACLVPFLLIISASLTANDSIIKDGYHLIPAQFSLE 68 M IK + T + + Y +I + ++ CL+PFLLI+S S T II G+ LIP FSL+ Sbjct: 1 MKIKMERATIVFNIIGYVLITILTVLCLLPFLLIVSGSFTPEIQIISKGFSLIPETFSLD 60 Query: 69 GYKTVFTFPDEVLRAYXXXXXXXXXXXXXXXXXXXXAGYVLARKDFKYRNTFSFYIYFTT 128 YK F+ P ++L Y AG+VL+RKDFKYR+ SF+IYFTT Sbjct: 61 AYKAAFSNPKQILEGYKVTIFITVAGTAIGLFLTSMAGFVLSRKDFKYRDQLSFFIYFTT 120 Query: 129 LFGGGLVPWYIMMTKYLHLTDSYGALIFPGLMTPFLIILMKNFIRSAVPEELFESAKIDG 188 LF GGL+PWYI++TK+L L D+Y ALI P L++ + IILMKNF++S +P+ + ESAKIDG Sbjct: 121 LFSGGLIPWYILITKHLDLKDTYMALIVPSLLSAWNIILMKNFMKS-IPDSIVESAKIDG 179 Query: 189 AGDFKIYWRIVLQLSMPGIATVGLFLALAYWNDWFSSSLFINDPHKYQLQFHLYNVINSA 248 AG+F IY R++L LS PG+AT+GLF+AL YWNDWF ++LFI Y LQF LY ++ SA Sbjct: 180 AGEFTIYLRLILPLSGPGLATIGLFMALGYWNDWFMANLFITSESHYPLQFLLYKILASA 239 Query: 249 AFIANMGAGTGVSLGSDLPTESTKMAMAIIVTGPILFLYPFIQRYFVKGLTIGAVKG 305 A + AG +S P E+ KMA A+I TGPI+FLYPF+QR+FVKGLTIGAVKG Sbjct: 240 AVLKTNVAG-NLSPTFQPPAETLKMAAAVIATGPIVFLYPFVQRFFVKGLTIGAVKG 295 >B1D570.1 B1D570_9BACL Binding-protein-dependent transport systems inner membrane component Length = 304 Score = 295 bits (755), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 144/300 (48%), Positives = 204/300 (68%), Gaps = 3/300 (1%) Query: 7 KSMHIKDDHYTRLLQGLAYTVIILGSLACLVPFLLIISASLTANDSIIKDGYHLIPAQFS 66 +S I+ D +++ Y VI + +L CL+PFLLI+ S T+ +I K G++ P +FS Sbjct: 7 ESRSIRTDASEVIVRTFGYVVISIFALCCLLPFLLILGTSFTSESAIKKFGFNFWPKEFS 66 Query: 67 LEGYKTVFTFPDEVLRAYXXXXXXXXXXXXXXXXXXXXAGYVLARKDFKYRNTFSFYIYF 126 YK VF PD ++ +Y GY L R DF YRN SF+IYF Sbjct: 67 TFAYKIVFENPDIIVGSYIVTILLTVAGTAIGLFLVAMTGYALQRPDFGYRNGISFFIYF 126 Query: 127 TTLFGGGLVPWYIMMTKYLHLTDSYGALIFPGLMTPFLIILMKNFIRSAVPEELFESAKI 186 TTLF GGLVP+Y+++T+YL L D+Y A++ PGL++PFLII+MK+F+RS +P + ESAKI Sbjct: 127 TTLFSGGLVPFYLLVTQYLSLKDNYLAVLLPGLLSPFLIIMMKSFVRS-IPHAITESAKI 185 Query: 187 DGAGDFKIYWRIVLQLSMPGIATVGLFLALAYWNDWFSSSLFINDPHKYQ-LQFHLYNVI 245 DGAGDF I+ R++L ++ P +AT+GLF+AL YWN+W++S LF++ +Y+ LQ LYNV+ Sbjct: 186 DGAGDFTIFLRLILPMTTPALATIGLFIALGYWNEWYNSMLFLSPNMEYRPLQLFLYNVV 245 Query: 246 NSAAFIANMGAGTGVSLGSDLPTESTKMAMAIIVTGPILFLYPFIQRYFVKGLTIGAVKG 305 SA F+ N A + VSL D+P ES KMA A++ TGP++ YPF+QRYF+KG+T+GAVKG Sbjct: 246 TSADFVRNSAAASNVSL-RDVPLESMKMATAVVATGPVIMFYPFVQRYFIKGITVGAVKG 304 >A9KJS8.1 A9KJS8_CLOPH Binding-protein-dependent transport systems inner membrane component Length = 303 Score = 285 bits (730), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 144/305 (47%), Positives = 200/305 (65%), Gaps = 2/305 (0%) Query: 1 MIRKEKKSMHIKDDHYTRLLQGLAYTVIILGSLACLVPFLLIISASLTANDSIIKDGYHL 60 M + + IK + + L + Y VI + +++CL PF+L+IS+S I+ +GY L Sbjct: 1 MKKNHRDGNSIKMSNGNKALSIICYVVIGIFAISCLFPFVLMISSSFMTEREIVAEGYKL 60 Query: 61 IPAQFSLEGYKTVFTFPDEVLRAYXXXXXXXXXXXXXXXXXXXXAGYVLARKDFKYRNTF 120 P +S+ YK + P +++ AY AGYVL RKDFKYRN F Sbjct: 61 FPKTWSIAAYKYLLDNPTKLINAYKVTITTTVIGTLLGLFTMSMAGYVLNRKDFKYRNFF 120 Query: 121 SFYIYFTTLFGGGLVPWYIMMTKYLHLTDSYGALIFPGLMTPFLIILMKNFIRSAVPEEL 180 SF+IYFTTLF GGLVP YI+ +YLHL DS +I PGL++ + I LM+NF++S +P+EL Sbjct: 121 SFFIYFTTLFSGGLVPSYILNVRYLHLKDSIWVMIIPGLISAWSIFLMRNFMKS-IPDEL 179 Query: 181 FESAKIDGAGDFKIYWRIVLQLSMPGIATVGLFLALAYWNDWFSSSLFINDPHKYQLQFH 240 +ESA IDGAG F IY ++ + L++P +AT+GLFLAL YWN W+S+SL+I+ P KY LQ++ Sbjct: 180 YESATIDGAGAFTIYRKVFMPLAIPSLATIGLFLALGYWNQWYSASLYIDTPSKYPLQYY 239 Query: 241 LYNVINSAAFIANMGAGTGVSLGSDLPTESTKMAMAIIVTGPILFLYPFIQRYFVKGLTI 300 L +IN + A G + + S LPT+S KMA A++ TGPI+ LYPF+QRYFV GLTI Sbjct: 240 LQKMINQTSIEALASQGHFIDV-STLPTQSVKMATAVLTTGPIILLYPFVQRYFVSGLTI 298 Query: 301 GAVKG 305 G+VKG Sbjct: 299 GSVKG 303 >C4G755.1 C4G755_ABIDE Putative uncharacterized protein Length = 309 Score = 271 bits (693), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 132/296 (44%), Positives = 195/296 (65%), Gaps = 2/296 (0%) Query: 10 HIKDDHYTRLLQGLAYTVIILGSLACLVPFLLIISASLTANDSIIKDGYHLIPAQFSLEG 69 +K +++ LAY + L +L C++PF+++IS S T+ + I GY L +FS + Sbjct: 16 KVKLSLSSKIFYILAYVCVGLMALICIIPFIVLISGSFTSENYIRTQGYSLFINEFSTKA 75 Query: 70 YKTVFTFPDEVLRAYXXXXXXXXXXXXXXXXXXXXAGYVLARKDFKYRNTFSFYIYFTTL 129 Y+ +F P V RAY YV+ RKDFKYRN FSF+ YFTTL Sbjct: 76 YELIFRNPITVFRAYGVSILITGVGTVLGTLLITMTAYVICRKDFKYRNHFSFFFYFTTL 135 Query: 130 FGGGLVPWYIMMTKYLHLTDSYGALIFPGLMTPFLIILMKNFIRSAVPEELFESAKIDGA 189 F GG+V YI +YL L DS ALI PGL F +++M++F+ + +P L E++KIDGA Sbjct: 136 FNGGMVSTYIFYIQYLRLKDSLWALILPGLFNVFYLLIMRSFVNT-IPPSLIEASKIDGA 194 Query: 190 GDFKIYWRIVLQLSMPGIATVGLFLALAYWNDWFSSSLFINDPHKYQLQFHLYNVINSAA 249 G+++I++++V L PG+ATVGLF+AL YWNDW+++ L+IN K+ LQ+ LYN++ Sbjct: 195 GEYRIFFQVVFPLLKPGLATVGLFMALGYWNDWYNAMLYINSNVKFPLQYMLYNLLQQTQ 254 Query: 250 FIANMGAGTGVSLGSDLPTESTKMAMAIIVTGPILFLYPFIQRYFVKGLTIGAVKG 305 +A + + +G+S+ +DLP+ S KMAMAI+ TGPIL +YPF+Q+YFVKG+T+G+VKG Sbjct: 255 ALARIASQSGISV-ADLPSNSLKMAMAIVATGPILLVYPFVQKYFVKGITVGSVKG 309 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.143 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,682,721,226 Number of extensions: 65380829 Number of successful extensions: 227049 Number of sequences better than 1.0e-05: 4907 Number of HSP's gapped: 220810 Number of HSP's successfully gapped: 4908 Length of query: 305 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 170 Effective length of database: 1,788,859,178 Effective search space: 304106060260 Effective search space used: 304106060260 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)