BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0382.0015.p (512 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A9U723.1 A9U723_PHYPA Predicted protein (Fragment) 264 2e-68 B3K4I9.1 B3K4I9_9BACI Putative uncharacterized protein 73 6e-11 B1D9J2.1 B1D9J2_9BACL Putative uncharacterized protein 63 6e-08 C0ZBE2.1 C0ZBE2_BREBN Putative uncharacterized protein 57 3e-06 B0KCC7.1 B0KCC7_THEP3 Putative uncharacterized protein 57 4e-06 >A9U723.1 A9U723_PHYPA Predicted protein (Fragment) Length = 636 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 143/301 (47%), Positives = 190/301 (63%), Gaps = 8/301 (2%) Query: 2 REVAEMSEKEERILKQDAQEVNLNAETIREMKIFNAMRNGVAQGKKRSKRRFYSYXXXXX 61 RE M EKE+RIL QDA EVN +AET+ EMK+ AMR G+ +GK R KRRFY + Sbjct: 344 REGQVMPEKEQRILLQDAYEVNKHAETLPEMKLTLAMRKGMERGKMREKRRFYFWSTGTV 403 Query: 62 XXXXXXXFLIFFPIGLPAGGTDDFDPGGSVQAASTKSWDDFAAYRNQPLHNRLVADILER 121 +I + IG A + Q A S YR+ L +A ++R Sbjct: 404 MALAAALLIINYSIGSLAHRAEP----APKQTAGIPSQSALDPYRSTYLEG--LASAMDR 457 Query: 122 DLIKPVRQSATNKGYRMDVDGAVTDGRKVYILFSVHNDTDKEITPADTKIQFGDFEVPYP 181 L+KP+ +S KGYR++VDGAVTDGR Y+LF V N TDKE+ AD ++ G E P Sbjct: 458 GLVKPIAESVEQKGYRVEVDGAVTDGRMAYVLFGVRNQTDKEVINADVALELGGVEAP-- 515 Query: 182 HRGAALEMAYDSESRIPPGQSKDYIYSTNYPGSIAYSKDVKFTLILTETSDQALASSSNK 241 +GA++E+A + +RIP + +IY+ S+ Y+KD KF + LTETS++AL SSSNK Sbjct: 516 SKGASVELAGSNTNRIPANGANHFIYTVPLNPSVQYTKDAKFHVTLTETSNEALMSSSNK 575 Query: 242 YRTGLEVSFELDPARFKDQEHTLPVDRTLTVDGQKIKVLQVEYTPLNTYVDLEYDKANTK 301 YRT ++SFELDPA FKD+E L DRTLTVDGQ++ V QV YTPL+TYVDL+YD++N K Sbjct: 576 YRTAFDISFELDPAMFKDKERVLHPDRTLTVDGQQVHVTQVIYTPLHTYVDLDYDQSNAK 635 Query: 302 R 302 + Sbjct: 636 Q 636 >B3K4I9.1 B3K4I9_9BACI Putative uncharacterized protein Length = 465 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 77/383 (20%), Positives = 151/383 (39%), Gaps = 48/383 (12%) Query: 120 ERDLIKPVRQSATNKGYRMDVDGAVTDGRKVYILFSVHNDTDKEITPADTKIQFGDFEVP 179 + +I+PV QS T Y + ++G + +++ + +++ ND AD K V Sbjct: 106 QHGMIQPVNQSVTRGDYTVTLNGILVGSQQMEVFYTIQNDAGYH---ADLK------RVE 156 Query: 180 YPHRGAALEMAYD----SESRIPPGQSKDYIYSTNYPGSIAYSKDVKFTLILTETSDQAL 235 +G++ + Y S+I PGQ+ + + + +++ + + + + Sbjct: 157 MKRKGSSQSLPYSIGSSGGSQIKPGQTFRSRSDIHMGENQSVPEEMTLSFSIAPYTTNTV 216 Query: 236 ASSSNKYRTGLEVSFELDPARFKDQEHTLPVDRTLTVDGQKIKVLQVEYTPLNTYVDLEY 295 SS + L++ +D + T+P+++ L ++ Q+ + + +P + Sbjct: 217 HQSSAEGEQVLDIDVSVDMETVQKFTRTIPLNKMLQIESQRFYLKEAVLSPAGIVLKANI 276 Query: 296 DKANTKRIFSLLNPVL-IATTGSQ----TDKLVYPGRITADNSEVYKDQSQATLVFKHTG 350 NT ++ L + L G Q +D PG D T F Sbjct: 277 PSTNTMKVSGLWDVYLETVVNGEQIRLNSDSAFLPGAGGGD----------MTYFFDSNI 326 Query: 351 LNQPDSASLKIAGISALEPDRMKFVIDLNKQQVIEAPTNDWEIVTSKQEHNATEAEILLR 410 L P+S +LK +G A++P MK VID +K++++ AP D E E Sbjct: 327 LENPESITLKASGFQAVDPSEMKLVIDTDKKEILRAPDGDLRFGAYTGHTLTVEYEERAD 386 Query: 411 RKVTNLFYYTDSQGAVQAEYIGASLADKFTDAKGQVHERTNRETALHNFXXXXXXXXXXX 470 R + ++ S+ +F D +G+ H T E A Sbjct: 387 RHMGSV-----------------SIEPEFVDGEGKKH--TINEDA-GGLSSSSRSSTDTG 426 Query: 471 MDEMSLFFDSQAADYPQPLTLSV 493 + ++ + + DYPQPLT ++ Sbjct: 427 ISLITQYIHLKPGDYPQPLTFTL 449 >B1D9J2.1 B1D9J2_9BACL Putative uncharacterized protein Length = 451 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 55/272 (20%), Positives = 117/272 (43%), Gaps = 26/272 (9%) Query: 119 LERDLIKPVRQSATNKGYRMDVDGAVTDGRKVYILFSVHNDTDKEITPADTKIQFGD-FE 177 ++ D ++PV S G +M +DG + D ++ +S+ N ++ ++ + E Sbjct: 103 MDNDFMQPVGLSEERDGMKMTIDGIIADESRIIAFYSLENMNGQKSVVNLQGVKLTEHLE 162 Query: 178 VPYPHRGAALEMAYDSESRIPPGQSKDYIYSTNYPGSIAYSKDVKFTLILTETSDQALAS 237 H + +D+ K N+ + + L L +T + A + Sbjct: 163 ASISHGSSDFREDWDT---------KQGTIDFNFVEGVQIPDTLNVDLELKKTGEAATSG 213 Query: 238 SSNKYRTGLEVSFELDPARFKDQEHTLPVDRTLTVDGQKIKVLQVEYTPLNTYVDLEYDK 297 T + +D A+F+ + T +++T+ V+GQKI ++ P +++ YD Sbjct: 214 ------TAWHFAIPIDKAKFEGLKETYDINQTVLVEGQKIIFGKMTVYPTRIGIEVSYDP 267 Query: 298 ANTKRIFSLLNPVLIATTGSQTDKLV--YPGRITADNSEVYKDQSQATLVFKHTGLNQPD 355 ANTK++F + L G + + G ++NS+V L + +P Sbjct: 268 ANTKKLFYFDDLRLEDEKGEEFGSITNGVSGSTLSENSQV--------LYLESNYFRKPK 319 Query: 356 SASLKIAGISALEPDRMKFVIDLNKQQVIEAP 387 L+ + I AL+ D+ + +DL+ ++++ +P Sbjct: 320 HLYLRASSIRALDKDKREVEVDLSHKKLLASP 351 >C0ZBE2.1 C0ZBE2_BREBN Putative uncharacterized protein Length = 443 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 69/300 (23%), Positives = 129/300 (43%), Gaps = 38/300 (12%) Query: 120 ERDLIKPVRQSATNKGYRMDVDGAVTDGRKVYILFSV-HNDTDKEITPADTKIQFGDFEV 178 E +L++ + S + + +D + D +++ + +++ H+ TDK + KI+ D Sbjct: 95 EHNLVQNIGASGSVEDVTFTIDQVLADEKRMVLFYTLKHSFTDKNV--GLHKIELLDQTG 152 Query: 179 PYPHRGAALEMAYDS-ESRIPPGQSKDYIY---STNYPGSIAYSKDVKFTLILTETSDQA 234 RG MA+ S ES P Q++ I + P ++ T+ Sbjct: 153 KEWKRG----MAWSSMESEEPVIQNRIDIVIEETAEIPDAM--------------TAKVT 194 Query: 235 LASSSNKYRTGLEVSFELDPARFKDQEHTL-PVDRTLTVDGQKIKVLQVEYTPLNTYVDL 293 L + + +T L + F +D +FK E + PV + +TVDGQ+ + Q+ P T V + Sbjct: 195 LKIDNLEQKTPLLIDFAVDKNKFKTFEKKVYPVMKEVTVDGQRFTIEQIAVFPTQTEVSI 254 Query: 294 EYDKANTKRIFSLLNPVLIATTGSQTDKLV---YPGRITADNSEVYKDQSQATLVFKHTG 350 +D AN K +F + + + +T P R +N VY +S Sbjct: 255 RFDPANQKHVFD-FDKLRLEDEKGETFAFWGNGVPVRNNGENGRVYHLES--------IY 305 Query: 351 LNQPDSASLKIAGISALEPDRMKFVIDLNKQQVIEAPTNDWEIVTSKQEHNATEAEILLR 410 +P+ LK GI A++ D+++ VID + + P + ++ +Q + LR Sbjct: 306 FVEPEKLILKADGIRAIDKDKLQIVIDAKTGLLTKVPNDRLKLTALRQVDEVVGMDFSLR 365 >B0KCC7.1 B0KCC7_THEP3 Putative uncharacterized protein Length = 305 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/161 (23%), Positives = 72/161 (44%), Gaps = 7/161 (4%) Query: 227 LTETSDQALASSSNKYRTGLEVSFELDPARFKDQEHTLPVDRTLTVDGQKIKVLQVEYTP 286 + E + ++ KY T S +D +FK + V+RT+ +DGQKI +V P Sbjct: 53 IPEVLNLSIEFKGLKYNT-FNFSIHIDKNKFKGLKEVYAVNRTMEIDGQKITFEKVIIYP 111 Query: 287 LNTYVDLEYDKANTKRIFSLLNPVLIATTGSQTDKLVYPGRITADNSEVYKDQSQATLVF 346 + + YD N+K+I + ++ G G+I+ S KD + L F Sbjct: 112 TRIALYIHYDPLNSKKILGYPDIGIVDEKGDIF------GQISNGVSGTRKDDNNIILYF 165 Query: 347 KHTGLNQPDSASLKIAGISALEPDRMKFVIDLNKQQVIEAP 387 + +P + + + A+ D+ + +IDL + +++ P Sbjct: 166 QSNYFKKPKELYVAFSKVKAIGKDKAEVIIDLKNKMILKKP 206 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.132 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,808,728,468 Number of extensions: 111569292 Number of successful extensions: 254732 Number of sequences better than 1.0e-05: 6 Number of HSP's gapped: 254727 Number of HSP's successfully gapped: 6 Length of query: 512 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 372 Effective length of database: 1,741,754,103 Effective search space: 647932526316 Effective search space used: 647932526316 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 134 (56.2 bits)