BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0382.0013.p (743 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K5J2.1 B3K5J2_9BACI Helix-turn-helix-domain containing protein... 179 9e-43 B1DHF8.1 B1DHF8_9BACL Transcriptional regulator, AraC family 170 6e-40 A4XN10.1 A4XN10_CALS8 Transcriptional regulator, AraC family 156 7e-36 A9KRK4.1 A9KRK4_CLOPH Transcriptional regulator, AraC family 149 1e-33 B3KHE9.1 B3KHE9_9BACI Helix-turn-helix-domain containing protein... 124 4e-26 >B3K5J2.1 B3K5J2_9BACI Helix-turn-helix-domain containing protein AraC type Length = 769 Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 179/789 (22%), Positives = 322/789 (40%), Gaps = 80/789 (10%) Query: 1 MRLNKAGNKRALYSRILVSMTLCVSLTFLASTILYYNYYIGVEKTQAFRSDLGNLTQTSK 60 M L + R RI++S L V++ +AS L V Q +D+ LTQ + Sbjct: 1 MNLLQTLRSRKYLQRIILSFMLVVAMLAIASLFLNAAARDKVLSLQ-HEADVKLLTQINY 59 Query: 61 EVVNMTDAAQSLSFQIYRNSTVSKIVFYDKPDIYDVTAAMSELGNYLSSMPYIESIYVYN 120 + NM + L+ +Y + + I D + L +++ PY+ + YN Sbjct: 60 NIENMNGIVKDLAVSLYNDEEL--IALKSGADYKQSILKIERLNRTVAASPYLHAAVFYN 117 Query: 121 PKSARLYIASSHGQNGVFTEQELVDRNILDILNHYQEYKPFTP-IPRVYSNGAAENGQVR 179 K R + + SH ++ R + L Y + + P + + + EN + Sbjct: 118 GKQGRFFSSLSH---------DMDTRVLYGALEDYMDARADLPKLQLIPLDLDGENEGID 168 Query: 180 AYTFLCYDAIGWDRAINSAVIVNISAPWI---NKEITSPVDSKSDTFILADQGK--LLSV 234 + F YD + +I+ + W+ K + + ++D + D L++ Sbjct: 169 VFAFFIYDGPSLGSVNRNVLILTVKPGWMLDNVKALNRVAERENDVLFVTDGNGQVLMAG 228 Query: 235 DSLEPHGLSPLEAAWVQQRIQGREAGY------FIGEFGGVNSLISYTAPDDLSWQYVRI 288 D P GL +++ + GR FI + G ++Y + WQ + + Sbjct: 229 DRKLPPGLD------IKRDLLGRMGSANHAPDSFIHQQGDKKYKVTYLSKGLNDWQIISL 282 Query: 289 TPYDIITRQTNSIRNATLLIAALIFVGGLAFSWLMSRRVYLPISRIVREM---NILEGEK 345 YD + +R + + + + L S L+S R+Y P+ R++ + + + Sbjct: 283 QDYDDVLGSVRQMRWTEMAVTLSVAMLALLLSVLISLRLYKPVGRLLTLVPYDGRGDAKA 342 Query: 346 RDSMFTIRQNTLRDLILGLKPLQSIQQVEKLRQLGIHFTFXXXXXXXXXXXXNYQEFRES 405 +D + I +N + ++I L+ L+ E+ Q I + + F Sbjct: 343 KDELSLITEN-VTEMIGKLRGLEQ----ERATQWNIAKLYHLRSLIGTSDSMDEDAFMRM 397 Query: 406 RSSYLL-------------------------------AYKFAIMNIASEICGQTYRVETV 434 + Y + Y FAI NI E+ E Sbjct: 398 KEQYGIDIAHPSPLRLALVQLDDLQSQVLQPVPRAEELYSFAIANIGQELLRHGGSCEAA 457 Query: 435 DMNDDGILVLLNIVDAKEYTDTELIETLLRQIQQACSDYLKVSLTLAYSHIDHNPVQLHQ 494 DM G LV V + E ++ R++QQ + +++ T+ S + QL + Sbjct: 458 DMKS-GHLVF---VVGGDSGHLESLDERFRELQQTILRFYRITFTVTLSDAFEDYRQLSK 513 Query: 495 LYKQVREASNHRLFFGHGCIISAQYICALQAN-IYHYPTEKEKKLTDALMSGKIDEAREQ 553 Y SN+R+ FG G +I + I + N P E E++LT+ L G +E + Sbjct: 514 HYNLALRHSNYRMIFGKGAVIRPEMIRRNERNESLTIPKELERRLTEGLKGGNSEETEQA 573 Query: 554 FSSIIRETADYPFPSVQLAVSRLSVTIKEILINIQKRNRLHNDGTAELPALD----SVET 609 S A++ F + A+ L++T+ L + N N + L A++ ET Sbjct: 574 IRSWREHLAEFSFDGMFSALLHLTMTLSHTLGEMNNNNL--NPVSVNLQAINRRILEKET 631 Query: 610 VDALEQAFFALFSEMHEQLAEKKNSKQHDLVRQINQKINEAYMEPSLSLNQIADELNMSP 669 +D +E + E+ EQ + K L + + I++ Y +P L++ +IAD L MS Sbjct: 632 LDEIECVLLDVVREVFEQRRSGREDKNRLLADTVKEMIDKHYADPDLNVQKIADMLKMSS 691 Query: 670 IYISRLYKQQTLTSIVDVILEVRMREVCSLLENTGLPVTTIAERCGFTSSSYLHRMFKRS 729 +Y+ +++K Q T++VD I R+ LE L V I E+ GF + SY +R+FKR Sbjct: 692 VYLGQVFKAQEGTTVVDQINATRLARAQQYLEQQQLTVAEIMEKVGFGNESYFYRLFKRR 751 Query: 730 FGTTPTDYR 738 +GTTP +YR Sbjct: 752 YGTTPKEYR 760 >B1DHF8.1 B1DHF8_9BACL Transcriptional regulator, AraC family Length = 775 Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 178/773 (23%), Positives = 321/773 (41%), Gaps = 60/773 (7%) Query: 9 KRALYSRILVSMTLCVSLTFLASTILYYNYYIGVEKTQAFRSDLGNLTQTSKEVVNMTDA 68 KR L+S I+++M L ++ A+T L V++ ++L LTQT + M + Sbjct: 14 KRVLFS-IMLTMALILTGLSAANTYLLERSVKHVQED----ANLKVLTQTQYNLSYMNEI 68 Query: 69 AQSLSFQIYRNSTVSKIVFYDKPDIYDVTAAMSELGNYLSSMPYIESIYVYNPKSARLYI 128 LS +R++ + ++F + D ++ N L S ++ S+ VYN + LY Sbjct: 69 IVHLSTFAFRDNALIPLMFSNNLPKMDYIRGYQQMYNMLESSSFLHSMAVYNASTRELYG 128 Query: 129 ASSHGQNGVFTEQELVDRNILDILNHYQEYKPFTPIPRVYSNGAAENGQVRAYTFLCYDA 188 +SS + +ILD L E P R+ + ++ A+ F+ D Sbjct: 129 SSSD----FLVDGGTTKSSILDWLLRSSEGS--LPASRLIPFSFQHSNKIDAFAFIVTDT 182 Query: 189 IGWDRAINSAVIVNISAPWINKEITS----PVDSKSDTFILADQGKLLSVDSLEPHGLSP 244 G SA+I+ I W+ ++ + + I G+L DS P Sbjct: 183 YGPFTPSQSAIILFIKPDWVFDSLSKLNGISSGNSGEILIRTSGGQLF--DSGHSGQTLP 240 Query: 245 LEAAWVQQRIQG--------REAGYFIGEFGGVNSLISYTAPDDLSWQYVRITPYDIITR 296 L+ A + + IQ ++G+ IG GG +I+Y W + I PY I + Sbjct: 241 LDQASIGKLIQAPNGESGAANDSGFVIGNSGGQKVMITYLHGIG-DWTILYIQPYKEIMK 299 Query: 297 QTNSIRNATLLIAALIFVGGLAFSWLMSRRVYLPISRIVREM------------------ 338 + +R + + + S +S ++Y PI ++R + Sbjct: 300 AVSDMRARNFALTGAFILLSIGISIWLSYKLYGPIEAMLRRILPHMRNTAPDSGKRNELD 359 Query: 339 ------NILEGEKRD--SMFTIRQNTLRDLILGLKPLQSIQQVEKLRQLGIHFTFXXXXX 390 L G+ ++ S +R+ +R + + L + + +R+ + Sbjct: 360 AMGDLYEQLSGQLQEISSEQIVRKYYIRKFLTDNRSLSELDMRQLIRKHELQLAPSGPYM 419 Query: 391 XXXXXXXNYQEF-RESRSSYLLAYKFAIMNIASEICGQTYRVETVDMNDDGILVLLNIVD 449 Y E+ R + S+ + FA+ NI E+ + +R E +DM +D +LL+ Sbjct: 420 NCTLRFDRYDEYDRRTSSAMKKLHSFAVTNITKEVLSRAFRCEMIDMQEDHFTILLS--G 477 Query: 450 AKEYTDTELIETLLRQIQQACSDYLKVSLTLAYSHIDHNPVQLHQLYKQVREASNHRLFF 509 +E D ++ + IQQ Y +SLT QL Y Q + S + + Sbjct: 478 KEETLDPAAVKPAIADIQQILERYYNLSLTCGIGEAVTQLTQLSASYYQSYQLSQYSILM 537 Query: 510 GHGCIISAQYI-CALQANIYHYPTEKEKKLTDALMSGKIDEAREQFSSIIRETADYPFPS 568 G+ II Q I L+ P + EKKL++A+ GK+ EA + A Sbjct: 538 GYKAIIEEQDIRTNLENKQKSLPDDVEKKLSEAIKKGKLTEAGSELERAFALLAALQLED 597 Query: 569 VQLAVSRLSVTIKEILINIQKRNRLHNDGT--AELPAL-DSVETVDALEQAFFALFSEMH 625 ++ A++ ++ IK I NR+ +P L T+D L AF +L + + Sbjct: 598 MRRAIADMAWIIKNAAAEITS-NRITQLSVDIERIPLLPQDYYTLDELHLAFLSLCTAIC 656 Query: 626 EQLAEKKNSKQHDLVRQINQKINEAYMEPSLSLNQIADELNMSPIYISRLYKQQTLTSIV 685 E+ + ++ + + I + Y + +LS IA + +S Y+ +L+K +I Sbjct: 657 EEAKPSSMERNEMIIETVKELIWQKYSDYNLSQQSIASTVKLSSAYVGKLFKDSCGMTIT 716 Query: 686 DVILEVRMREVCSLLENTGLPVTTIAERCGFTSSSYLHRMFKRSFGTTPTDYR 738 + + +VR+R LL +T I E+ G+ + SY R+FK FGTTP ++R Sbjct: 717 EYLNDVRLRRAQELLLKEDSTITEIMEKVGYGNQSYFFRLFKSKFGTTPKEFR 769 >A4XN10.1 A4XN10_CALS8 Transcriptional regulator, AraC family Length = 789 Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 177/785 (22%), Positives = 363/785 (46%), Gaps = 73/785 (9%) Query: 10 RALYSRILVSMTLCVSLTFLASTILYYNYYIGVEKTQAFRSDLGNLTQTSKEVVNMTDAA 69 + L+S +L+S+ L SL+FL Y + + R + Q+ ++ Sbjct: 21 KILFSYLLISVVLTSSLSFLLIKT-----YTAKQINEVKRITHNMVLQSYNTADSIFFNT 75 Query: 70 QSLSFQIYRNST--VSKI--VFYDKPDIYDVTAAMSELGNYLSSMPYIESIYVYNPKSAR 125 S + IY++ T V+ + +D D Y++ + + N L+ M Y S+Y+ N + Sbjct: 76 FSFLYSIYQSDTDIVNGLYGTTFDWVDKYNIMEKLKRILN-LNKMIY--SVYICNAEVRL 132 Query: 126 LYIASSHGQNGVFTEQELVDRNILDILNHYQEYKPFTPIPR-----VYSNGAAENGQVRA 180 ++ A+S G + + D++ L+++N +E I R +++ ++N Sbjct: 133 VFSATSDGYTFIDRWESFYDKDALELINDVKERYRCLFIARATKYKIFNTTFSQN----F 188 Query: 181 YTFLCYDAIGWDRAI-NSAVIVNISAPWINKEITS-PVDSKSDTFILADQGKLLSVDSLE 238 T L Y ++ I +SA I+N I K +TS +D + FI+ +G ++S + Sbjct: 189 ITLLFYMP---EKGISDSAFIINFKQADIQKTLTSGKIDDQFQVFIIDKEGYVISHNDER 245 Query: 239 PHGLSPLEAAWVQQRI-QGREAGYFIGEFGGVNSLISYTAPDDLSWQYVRITPYDIITRQ 297 G S E ++++ I +AG F+GE+ +SY ++L W V + Y+ + Sbjct: 246 MIGKSMGEEKFIKRIITSSTKAGDFVGEYNSKKIFVSYVRSENLGWTIVGVGEYNRLLNV 305 Query: 298 TNSIRNATLLIAALIFVGGLAFSWLMSRRVYLPISRIVREM------------------- 338 + + +LI + + G+ ++L ++++YLPI R+V E+ Sbjct: 306 STIAKKQMILITIVFLLVGIFIAFLFTQKMYLPIGRLVNEIRQKKVASVSEMDEYTFLNF 365 Query: 339 ---NILEGEKR-----DSMFTIRQNTLRDLILGLKPLQSIQQVE-KLRQL----GIHFTF 385 N+++ ++ D M + ++ +++IL L + + E K++QL I Sbjct: 366 AFNNLIDNLRKLTRDVDIMVSAKK---KEIILRLLNGEYVSTNEGKVKQLMKQYEIKLAN 422 Query: 386 XXXXXXXXXXXXNYQEF-RESRSSYLLAYKFAIMNIASEICGQTYRVETVDMNDDGILVL 444 N++ R+ + +KF+I+N+A E + Y E+V+ + + ++ Sbjct: 423 SSSFAVIIIALDNFKNLCMMYRAKDISLFKFSILNVAEETLSERYVTESVENGLNYVSII 482 Query: 445 L-NIVDAKEYTDTELIETLLRQIQQACSDYLKVSLTLAYSHIDHNPVQLHQLYKQVREAS 503 + N +E EL+E +++ + +L +S+T+ +I H+ ++ Y++ Sbjct: 483 VGNDKHGRELDMNELVE-YANKVKNNINKFLNLSVTVTVGNIVHSINLINNSYERAMNLL 541 Query: 504 NHRLFFGHGCIISAQYICALQANIYHYPTEKEKKLTDALMS---GKIDEAREQFSSIIRE 560 ++RL G +IS + + + YP + E ++ A+ S KI+EA F I Sbjct: 542 SYRLLKGFNQVISV-FDTVNEDSKREYPYDIENQIIKAIKSKCPSKIEEAVNMFFDYISN 600 Query: 561 -TADYPFPSV-QLAVS-RLSVTIKEILINIQKRNRLHNDGTAELPALDSVETVDALEQAF 617 T D F S+ QL++ + + ++ K L+N + + ET++ +++ Sbjct: 601 FTPDDVFQSIIQLSIMLNRTFNVSSLVSKEVKVTSLYNFKSL-FTQIQEYETLEEIKKLM 659 Query: 618 FALFSEMHEQLAEKKNSKQHDLVRQINQKINEAYMEPSLSLNQIADELNMSPIYISRLYK 677 + +E+ + + K+ ++ +Q+ + I+E Y P +++ +AD++N+SP Y+ ++K Sbjct: 660 LTISTELAKTFENETLVKKKEVAQQVKEYIDENYSRPDITIYTLADKVNLSPNYVRLIFK 719 Query: 678 QQTLTSIVDVILEVRMREVCSLLENTGLPVTTIAERCGFTSSSYLHRMFKRSFGTTPTDY 737 + S D +LEVRM + LL T V IAE GF+ + Y + FKR G T ++ Sbjct: 720 EIYNISPSDYLLEVRMNKAKELLIQTDYTVKKIAELVGFSDNRYFYITFKRYTGKTAEEF 779 Query: 738 RRSRQ 742 R+ + Sbjct: 780 RKEHR 784 >A9KRK4.1 A9KRK4_CLOPH Transcriptional regulator, AraC family Length = 778 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 163/760 (21%), Positives = 340/760 (44%), Gaps = 78/760 (10%) Query: 39 YIGVEKT---QAFRSDLGNLTQTSKEVVNMTDAAQSLSFQIYRNSTVSKIVFYDKPDIY- 94 YIG++KT +++ L Q + + + + ++L+ IY++ + K++ + + Sbjct: 37 YIGMKKTILDVKNSANMNELAQANSTINYLFEMTKNLALYIYQDEDLVKLLHIEDKEFLN 96 Query: 95 --DVTAAMSELGNYLSSMPYIESIYVYNPKSARLYIASSHGQNGVFTEQELVDRNILDIL 152 D ++L Y + + +SI +YN K + QN ++ L + I Sbjct: 97 SLDYIKLRTKLNTYTHTFEFSDSIIIYNSKLDLITSTEYSIQN---YDKPLANAIKKYIN 153 Query: 153 NHYQEYKPFTPIPRVYSNGAAENG---QVRAYTFLCYDAIGWDRAINSAVIVNISAPWI- 208 N +EY F + + +G ++ + F+ D + + + I W+ Sbjct: 154 NDMKEYAEFAILDYLEEDGKKNTAFLFGLKDWKFITPDN-------QTTIGILIKPEWLF 206 Query: 209 -NKEITSPVDS--KSDTFILADQGKLLSVDS--LEPHGLSPLEAAWVQQRIQGREAGYFI 263 N EI + D+ + + FIL ++G+L S D+ ++ L+ L+ + Q + + YF Sbjct: 207 DNLEIINKADANQEKEIFILDNKGELYSSDAKLVKDESLNELKNIVMNQ---PQNSDYFD 263 Query: 264 GEFGGVNSLISYTAPDDLSWQYVRITPYDIITRQTNSIRNATLLIAALIFVGGLAFSWLM 323 V +Y + W+ + I PY++ Q I + I I + L +++ Sbjct: 264 VYIHNVKYKATYIKNEMCKWKIISIQPYNVFMSQLYKITGIFIAITFTIILIALGLAFIF 323 Query: 324 SRRVYLPISRIVRE-------------------------------MNILEGEKRDSMFTI 352 ++ +Y+P++++V++ ++I + + + S I Sbjct: 324 TKHIYVPVNKVVKQFIHKNKNISNDLKIEDELGFIVKSYENAVSQISIQQSDLKSSKKYI 383 Query: 353 RQNTLRDLILGLK--PLQSIQQ--VEKLRQLGIHFTFXXXXXXXXXXXXNYQEFRESRSS 408 R ++ L++ K L+ +++ VE+L + + F EF Sbjct: 384 RSYWIKRLLMESKMLSLEELKKNDVEELLNVNLLEEFIIIILNIDENG----EFNRHTIE 439 Query: 409 YLLAYKFAIMNIASEICGQTYRVETVDMNDDGILVLLNIVDAKEYTDTELIETLLRQIQQ 468 Y++AI NI+ E+ G+++ VDM ++ ++VL+++ D K IE +R+IQQ Sbjct: 440 NQRIYRYAIENISQEVIGESFPCNIVDMGEENLVVLVSLKDTKGVVAQ--IEECVRKIQQ 497 Query: 469 ACSDYLKVSLTLAYSHIDHNPVQLHQLYKQVREASNHRLFFGHGCIISAQYICAL-QANI 527 Y + SL+ A S N + + YK+ +++L +G+ C+I + + ++N Sbjct: 498 TVVTYYEFSLSAAISDKIENYSDISKSYKKALHLLSYKLIYGNECMIKESMLEEIFESNK 557 Query: 528 YHYPTEKEKKLTDALMSGKIDEAREQFSSIIRETADYPFPSVQLAVSRLSVTIKEIL-IN 586 + +KE+KL +S K + R + + I + + + +++ LS +I+ IN Sbjct: 558 EMFILQKEQKLEGLFISDKEELFRTEINEIFETIKNMKYSEIMSSINYLSFLFYKIIKIN 617 Query: 587 IQKRNRLHNDGTAELPALD----SVETVDALEQAFFALFSEMHEQLAEKKNSKQHDLVRQ 642 + N+ ++ L+ + +++ +++ F ++ +H+ E ++ + LV Sbjct: 618 FPMQ---FNEQIKQMNILNKNIFNSASLEEIKEIFIEIYINIHKNPQENISTTNNMLVST 674 Query: 643 INQKINEAYMEPSLSLNQIADELNMSPIYISRLYKQQTLTSIVDVILEVRMREVCSLLEN 702 I Q I E Y +P+LS IA L +S + +++K SI + + +VR++ C LLEN Sbjct: 675 IIQIIEENYKDPNLSQEWIASTLKLSYSNVGKVFKLVEKVSIAEYVNKVRLKYACELLEN 734 Query: 703 TGLPVTTIAERCGFTSSSYLHRMFKRSFGTTPTDYRRSRQ 742 T + I GF + SY +FK+ FG TP Y+ ++ Sbjct: 735 TNYSINDIFNSVGFVNQSYFFTLFKKYFGCTPKQYQLQKK 774 >B3KHE9.1 B3KHE9_9BACI Helix-turn-helix-domain containing protein AraC type Length = 790 Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 171/798 (21%), Positives = 340/798 (42%), Gaps = 82/798 (10%) Query: 2 RLNKAGNKRALYSRILVSMTLCVSLTFLASTILYYNYYIGVE---KTQAFRSDLGNLTQT 58 R N +R+L+ R+LVS L + L ++++ +Y +E K+ A RS+LG L Q Sbjct: 7 RKNAGSKRRSLFIRMLVSNCLLL----LVPILIWFVFYTNIEHIMKSNAERSNLGMLEQM 62 Query: 59 SKEVVNMTDAAQSLSFQIYRNSTVSKIVFYDKPDIYDVTAAMSELGNYLS-----SMPYI 113 + + + LS QI N + ++ + D+ + + +YL + ++ Sbjct: 63 RLNIDSHFKEIEQLSHQIILNPKLRYLLDTENKDLSERYHLVQFTRDYLKMHSRMTKDFV 122 Query: 114 ESIYVYNPKSARL----YIASSHG-QNGVFTEQELVDRNILDILN--HYQEYKPFTPIPR 166 Y++ +S + + SH + + + L + H Q Y P + + R Sbjct: 123 YDFYIFLDRSDSVIKPNLVTDSHNFYDKYYRFEHLTYEEWRKQMTSYHSQTYLPSSTLQR 182 Query: 167 VYSNGAAENGQVRAYTFLCYDAIGWDRAINSAVIVNISAPWINKEITSPVDSK--SDTFI 224 NG ++ ++ TF+ + + + V I I+ E+T ++S S +I Sbjct: 183 ---NGYLKDDPMQVITFMQSLPVEETSNMKGNLTVLIDETKIH-EMTRQIESANGSSVYI 238 Query: 225 LADQGKLLSVDSLEPHGLSPLEAAWVQQRIQGREAGYFIGEFGGVNSLISYTAPDDLSWQ 284 + +L+S G SPL + + + +G G + +S+T + W Sbjct: 239 VNQNHELISSTP----GASPLSNSILNEL--KSNSGLRNYNLNGQDVTVSFTTSGQVGWY 292 Query: 285 YVRITPYDIITRQTNSIRNATLLIAALIFVGGLAFSWLMSRRVYLPISRIVRE------- 337 Y+ + P ++ ++ + + L + L + G A ++ ++ R Y PI R++ Sbjct: 293 YIAVMPLNVYLQKVKQMEHLALWLLLLCILAGSAAAYGIAYRNYFPIKRMIEAIQAGKSH 352 Query: 338 ---------------MNILEGEKR-------DSMFTIRQNTLRDLILG-LKPLQSIQQVE 374 M I E+R + +R N L ++ G +P + ++Q Sbjct: 353 PRKPAVNEFDYILEMMKISWDEERHIKNKLTQQLPILRSNYLHRVLQGYFEPPEQMKQ-- 410 Query: 375 KLRQLGIHFTFXXXXXXXXXXXXNYQEFRESRSSYLLAY-KFAIMNIASEICGQTYRVET 433 L +GIHF F + F ++S A +F I N+A + + + + T Sbjct: 411 SLEFMGIHFPFPHFIVILVQVD-DMTRFAPNQSEKQWALVRFIISNLAEDTVYEGHTIHT 469 Query: 434 VDMNDDGILVLLNIVDAKEYTDTELIETLLRQIQQACSDYLKVSLTLAYSHIDHNPVQLH 493 +D+ D + +L+N++ + T ++ ++ + + K+ +++A S + Q+ Sbjct: 470 IDLEKDRLALLVNLLPDQMDHPTCRVKDIVSGLHRMLETRFKLEISIAISGVHKGQHQIG 529 Query: 494 QLYKQVREASNHRLFFGHGCIISAQYICALQANI-YHYPTEKEKKLTDALMSGKIDEARE 552 + Y + A +R+ +G + + Y Q + Y+YP E E +L + + SG E Sbjct: 530 EAYLEAAAALEYRMV--NGQLSTFYYHDIRQKKLQYYYPVETELQLINCIRSGDT----E 583 Query: 553 QFSSIIRETADYPF--PSVQLAVSR-LSVTIKEILINIQKRN-------RLHNDGTAELP 602 Q ++ + D F S+ + R L ++ L+ I + +L + Sbjct: 584 QVVQLLTQLFDRNFRDESITPELGRCLLFSLAGTLLRIMASDSDTLAYRKLTEGDIHPVR 643 Query: 603 ALDSVETVDALEQAFFALFSEMHEQLAEKKNSKQHDLVRQINQKINEAYMEPSLSLNQIA 662 L S +T D + + L+ E +++ L+ QI I Y +P++SLN ++ Sbjct: 644 FLLSCKTTDEMFEKAKDLYVSAAESFKLERSDHNEQLLLQIQTCIQANYADPNMSLNLVS 703 Query: 663 DELNMSPIYISRLYKQQTLTSIVDVILEVRMREVCSLLENTGLPVTTIAERCGFTSSSYL 722 + L ++P YIS+ +K+ + + D + VRM L+ + GL IA+ G+TS + Sbjct: 704 EHLQITPQYISQFFKRVSGQNFNDYLTVVRMDHAKKLMSDPGLTNAQIAKMVGYTSDTVF 763 Query: 723 HRMFKRSFGTTPTDYRRS 740 R+FK+ G TP YR S Sbjct: 764 IRVFKKVEGITPGKYRES 781 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.134 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,977,421,348 Number of extensions: 155751725 Number of successful extensions: 479636 Number of sequences better than 1.0e-05: 2059 Number of HSP's gapped: 480911 Number of HSP's successfully gapped: 2068 Length of query: 743 Length of database: 3,060,696,203 Length adjustment: 144 Effective length of query: 599 Effective length of database: 1,704,070,043 Effective search space: 1020737955757 Effective search space used: 1020737955757 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 135 (56.6 bits)