BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0382.0012.p (251 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A3DHI5.1 A3DHI5_CLOTH Transcriptional regulator, AraC family 90 2e-16 B4BCA0.1 B4BCA0_CLOTM Transcriptional regulator, AraC family 90 2e-16 C4D6U0.1 C4D6U0_9SPHI Response regulator containing CheY-like re... 88 7e-16 A6PQ22.1 A6PQ22_9BACT Helix-turn-helix-domain containing protein... 87 1e-15 B6FPJ0.1 B6FPJ0_9CLOT Putative uncharacterized protein 85 6e-15 >A3DHI5.1 A3DHI5_CLOTH Transcriptional regulator, AraC family Length = 302 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/272 (26%), Positives = 119/272 (43%), Gaps = 37/272 (13%) Query: 12 HEANTYIPPHQHECFELVYYIHGHGTTSIGPRSFHFRPFTFALIPPNFKHD--ENHQPSP 69 H+ + ++ P++HECFE+VY G I P +I PN H + Sbjct: 34 HDTSWHMEPNKHECFEMVYIKRGKAVFEIAGYPAEIGPNDIIIIKPNQPHKFIVKSESGC 93 Query: 70 EVLFVGFHCGNPIINTLSGVYDD-----------------------DKEHTVLQTLLRMN 106 E + + F +N G Y D +++ ++ L R+ Sbjct: 94 EFIVLSFK----FVNRFDGQYSDVSLENFLDFVSGKETGPFITLKVSQKNDIIVLLNRIL 149 Query: 107 EEFKRKRDGFAELLN-LQMSEVTVYLQRLLAASDFHS------PAEDQMQYVLNYMNEHY 159 +E + D +E LN L + E+ V + R L +S ++ +Q +NY+N +Y Sbjct: 150 KE-RENPDIGSEFLNYLLVMELFVLISRALKMEWENSIKNKSPKIKELIQASVNYINNNY 208 Query: 160 RHKLSITSLAEMSGYSYDRFRHLFKERFGHSPHRYLLLKRLDYAKSLLLHTQMHISGVSA 219 +S+ +A S F FKE G SP YLL R++ AK LL T IS ++ Sbjct: 209 ERDISLKDIARYVFLSTSYFTRAFKEEMGISPINYLLKIRVERAKELLKDTDNRISDIAL 268 Query: 220 AAGFVNDAQFCNMFKREIGLSPRTFRLQSKVK 251 + GF N +F ++FK+ + L+P +R +VK Sbjct: 269 SVGFSNQQRFNDIFKKYVKLTPLQYRKNVQVK 300 >B4BCA0.1 B4BCA0_CLOTM Transcriptional regulator, AraC family Length = 302 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/272 (26%), Positives = 119/272 (43%), Gaps = 37/272 (13%) Query: 12 HEANTYIPPHQHECFELVYYIHGHGTTSIGPRSFHFRPFTFALIPPNFKHD--ENHQPSP 69 H+ + ++ P++HECFE+VY G I P +I PN H + Sbjct: 34 HDTSWHMEPNKHECFEMVYIKRGKAVFEIAGYPAEIGPNDIIIIKPNQPHKFIVKSESGC 93 Query: 70 EVLFVGFHCGNPIINTLSGVYDD-----------------------DKEHTVLQTLLRMN 106 E + + F +N G Y D +++ ++ L R+ Sbjct: 94 EFIVLSFK----FVNRFDGQYSDVSLENFLDFVSGKETGPFITLKVSQKNDIIVLLNRIL 149 Query: 107 EEFKRKRDGFAELLN-LQMSEVTVYLQRLLAASDFHS------PAEDQMQYVLNYMNEHY 159 +E + D +E LN L + E+ V + R L +S ++ +Q +NY+N +Y Sbjct: 150 KE-RENPDIGSEFLNYLLVMELFVLISRALKMEWENSIKNKSPKIKELIQASVNYINNNY 208 Query: 160 RHKLSITSLAEMSGYSYDRFRHLFKERFGHSPHRYLLLKRLDYAKSLLLHTQMHISGVSA 219 +S+ +A S F FKE G SP YLL R++ AK LL T IS ++ Sbjct: 209 ERDISLKDIARYVFLSTSYFTRAFKEEMGISPINYLLKIRVERAKELLKDTDNRISDIAL 268 Query: 220 AAGFVNDAQFCNMFKREIGLSPRTFRLQSKVK 251 + GF N +F ++FK+ + L+P +R +VK Sbjct: 269 SVGFSNQQRFNDIFKKYVKLTPLQYRKNVQVK 300 >C4D6U0.1 C4D6U0_9SPHI Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 278 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 66/260 (25%), Positives = 127/260 (48%), Gaps = 27/260 (10%) Query: 13 EANTYI-PPHQHECFELVYYIHGHGTTSIGPRSFHFRPFTFALIPPNFKHDENHQPSPEV 71 EA T++ H+H FE+++ + GHG +I +F + L+ P HD Q S E Sbjct: 16 EATTWMHAVHKHTYFEIIFILKGHGIHNINGNTFGYSEGDVFLLGPEDYHDFTIQESTEF 75 Query: 72 LFVGFH-------CGN------PIINTL--------SGVYDDDKEHTVLQTLLR-MNEEF 109 F+ FH G+ PII TL + +D +E L LL + EE+ Sbjct: 76 CFIRFHESLHEHSAGDKDTPWQPIIKTLLTTSSQSRGTIVEDKQEKQKLHYLLTVLEEEY 135 Query: 110 KRKRDGFAELL--NLQMSEVTVYLQRLLAASDFHSPAEDQMQYVLNYMNEHYRH--KLSI 165 KR + + ++ +L S + + + L + S +S D ++ +L Y+ +H KL+I Sbjct: 136 KRDQSPYFAIIRDSLLRSMLMILARNLFSHSLANSQTTDSVEAILMYIRQHIYQPGKLTI 195 Query: 166 TSLAEMSGYSYDRFRHLFKERFGHSPHRYLLLKRLDYAKSLLLHTQMHISGVSAAAGFVN 225 LA++ Y+ FK++ G S +Y++ ++ ++ LL++ ++++ ++ G+ + Sbjct: 196 DHLADVFHYAPAYISLFFKKQTGESLKQYIIKYKIKLIEARLLYSSLNLAQIADEFGYTD 255 Query: 226 DAQFCNMFKREIGLSPRTFR 245 ++ C F++ G +P FR Sbjct: 256 ESHLCKQFRKYTGSTPSDFR 275 >A6PQ22.1 A6PQ22_9BACT Helix-turn-helix-domain containing protein, AraC type Length = 286 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/246 (28%), Positives = 103/246 (41%), Gaps = 6/246 (2%) Query: 2 DRVLYIVNAEHEANTYIPPHQHECFELVYYIHGHGTTSI-GPRSFHFRPFTFALIPPNFK 60 + +L+ + +T +P H H ELV I G T G S RP T + PP Sbjct: 4 NSLLFSYAGHYCGSTPVPRHSHRGTELVLVIAGSCVTEFDGGVSLAARPGTVYITPPELA 63 Query: 61 HDENHQPSPEVLFVGFHCGNPII-NTLSGVYDDDKEHTVLQTLLRMNEEFKRKRDGFAEL 119 H +N+ P E L+ P N L + D VL+ + R D + Sbjct: 64 HTQNNTPDCETLYAVMELSGPGFDNRLRSIETGDDP--VLRQWFAQLQLLNR--DYLLDQ 119 Query: 120 LNLQMSEVTVYLQRLLAASDFHSPAEDQMQYVLNYMNEHYRHKLSITSLAEMSGYSYDRF 179 + + V L+ A SD +Q ++Y+ HY SI+ LA SG S Sbjct: 120 ASALLLAVWARLRHFEARSDRARTLHPGLQTAVDYIERHYMDDFSISELAARSGVSQSHL 179 Query: 180 RHLFKERFGHSPHRYLLLKRLDYAKSLLLHTQMHISGVSAAAGFVNDAQFCNMFKREIGL 239 LF+ FG YL R+ A+ LLL+ +I+ V+ AGF F +F+R G+ Sbjct: 180 NALFRRAFGTGAQSYLTAARMRCARRLLLNPYYNIADVAQHAGFREANYFTRLFRRFHGV 239 Query: 240 SPRTFR 245 +P +R Sbjct: 240 TPGEYR 245 >B6FPJ0.1 B6FPJ0_9CLOT Putative uncharacterized protein Length = 284 Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 67/257 (26%), Positives = 119/257 (46%), Gaps = 17/257 (6%) Query: 3 RVLYIVNAEHEANTYIPPHQHECFELVYYIHGHGTTSIGPRSFHFRPFTFALIPPNFKHD 62 R+LYI A ++ + + H H EL Y + G G + + F + +I PN H Sbjct: 19 RLLYITQARYDTDWHSIAHTHHFTELFYVVQGSGYFLVEDKKFPVKEDDLVIINPNVSHT 78 Query: 63 E-NHQPSP-EVLFVGFHCGNPIINTLSGVYD---------DDKEHTVLQTLLRMNEEFKR 111 E + P E + +G + L YD ++ L+TLLR E + Sbjct: 79 ELGSKGRPLEYIALGINGLKFKDGNLDTTYDYSLHNFHEYKEEFSFYLKTLLR---EIQN 135 Query: 112 KRDGFAELLNLQMSEVTVYLQRLLAASDFHSPAED---QMQYVLNYMNEHYRHKLSITSL 168 K + F + + + + L R +P + + ++V Y++EH+ +++ +L Sbjct: 136 KGEYFETVCQNLLEALVLTLVRRTKKQLSFTPTKKITKECRFVEQYIDEHFMEDITLQTL 195 Query: 169 AEMSGYSYDRFRHLFKERFGHSPHRYLLLKRLDYAKSLLLHTQMHISGVSAAAGFVNDAQ 228 ++++ + H FK G SP YL+ +RL AK LL T IS ++A+ GF + + Sbjct: 196 SDLTYLNKYYLVHAFKNYKGVSPINYLINRRLVEAKHLLATTNYPISKIAASIGFSSQSY 255 Query: 229 FCNMFKREIGLSPRTFR 245 F +F++E G+SP +R Sbjct: 256 FSQVFRKETGMSPNAYR 272 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.138 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,494,455,741 Number of extensions: 59484540 Number of successful extensions: 190751 Number of sequences better than 1.0e-05: 2803 Number of HSP's gapped: 191262 Number of HSP's successfully gapped: 2803 Length of query: 251 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 119 Effective length of database: 1,817,122,223 Effective search space: 216237544537 Effective search space used: 216237544537 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)