BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0382.0011.p (378 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2BFW1.1 C2BFW1_9FIRM Lipid ABC superfamily ATP binding cassette... 355 5e-96 A8F601.1 A8F601_THELT Basic membrane lipoprotein 309 2e-82 C5CJ31.1 C5CJ31_9THEM Basic membrane lipoprotein 288 6e-76 C5EJJ9.1 C5EJJ9_9FIRM Basic membrane lipoprotein 286 3e-75 C4WPC0.1 C4WPC0_9RHIZ Basic membrane protein A 283 1e-74 >C2BFW1.1 C2BFW1_9FIRM Lipid ABC superfamily ATP binding cassette transporter, binding protein Length = 370 Score = 355 bits (910), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 179/332 (53%), Positives = 239/332 (71%), Gaps = 3/332 (0%) Query: 46 DKLKVVLLIPGTLGDKSFFDAANSGLQKVKDELGAETKVVEMGADKTKWEPTFNDIAAED 105 + KV+LLIPG LGDKSFFDAAN G+++V G TKVVEM D+ KWEP F D E Sbjct: 38 ESYKVILLIPGNLGDKSFFDAANKGMEEVAQLEGVTTKVVEMSPDEKKWEPAFLDAIDEG 97 Query: 106 WDVVISGGSEITEMFNATAEANPDKKFINYDTDIEEAPKNMYNMSYSTNEVSFLAGAVAA 165 +D++ISG + +++ N AE NPD +F+N+D EAP N+Y+++Y+TNE SFLAGA AA Sbjct: 98 YDLIISGNAA-SDIMNKLAEENPDSRFLNFDNSGTEAPSNVYSVTYATNEGSFLAGAFAA 156 Query: 166 LATQS-DMPNANKENVIGFVGGMDIPGINAFLVGYIQGAQYVDPDVKVAVSYAGDFVNPA 224 + T + +M N N E +IGF+GGMDIPGIN FLVGYIQGAQY+D D+KVA SYAG F +PA Sbjct: 157 MVTSNKEMKNTNDEKLIGFLGGMDIPGINDFLVGYIQGAQYIDKDIKVATSYAGTFTDPA 216 Query: 225 KGKELSLIQYNSGVDVIFNVAGGTGLGIFDAAKEKTKYAIGVDSDQAMLLKDTDSEKANL 284 KGKEL + YN GVD+ FNVAG TGLG+ DAA E KYAIGVDSDQ+ L +T+ EKA L Sbjct: 217 KGKELGIGMYNMGVDIAFNVAGQTGLGLIDAAYESNKYAIGVDSDQSKLYGETEPEKAKL 276 Query: 285 IVTSAIKKIDMAILGAVKKLQDGTLEMGKRDVLGFVEDGVGIAENDIYKNVFPADLQAKV 344 ++TS +K+ID IL VKK ++G LE GK ++LG + V +A+NDIY+ V PA+++ K+ Sbjct: 277 VLTSVVKQIDTTILEGVKKAREGKLEFGKHELLGLSANAVALADNDIYQTV-PAEIREKM 335 Query: 345 EEVKQKLINKEITVDNAMGMETSEVEAIRNAV 376 + + +I+ +I V + M T E+ R++V Sbjct: 336 SALAKDIIDGKIKVKSGFEMSTDEISKYRDSV 367 >A8F601.1 A8F601_THELT Basic membrane lipoprotein Length = 354 Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 154/336 (45%), Positives = 221/336 (65%), Gaps = 3/336 (0%) Query: 46 DKLKVVLLIPGTLGDKSFFDAANSGLQKVKDELGAETKVVEMGADKTKWEPTFNDIAAED 105 + LKV LL+ G LGDKSF D+A GL+ +ELG + KV+E + W P DI+ +D Sbjct: 19 EPLKVALLLNGRLGDKSFLDSAGRGLEMAVEELGIQGKVIEANYNPANWRPYLEDISDQD 78 Query: 106 WDVVISGGSEITEMFNATAEANPDKKFINYDTDIE---EAPKNMYNMSYSTNEVSFLAGA 162 +DV+I G ++ E+ A +P+KK+ +D ++ N+Y+M Y NE SFLAGA Sbjct: 79 YDVIIVGTWQMQEILEEVAPMHPEKKYFIFDASVDYNKSKLDNVYSMIYKQNEGSFLAGA 138 Query: 163 VAALATQSDMPNANKENVIGFVGGMDIPGINAFLVGYIQGAQYVDPDVKVAVSYAGDFVN 222 +AAL T S +P N E VIGF+GG+DIP IN FLVGYI+GA+YV+P++KV +SY G F + Sbjct: 139 LAALITTSGIPKTNPEPVIGFLGGVDIPVINDFLVGYIEGAKYVNPEIKVLISYVGSFND 198 Query: 223 PAKGKELSLIQYNSGVDVIFNVAGGTGLGIFDAAKEKTKYAIGVDSDQAMLLKDTDSEKA 282 PAKGKE+SL Y G D+IFNVA TG+G+ +AAKE ++ IGVDSDQA++ + TD E + Sbjct: 199 PAKGKEISLAMYRHGADIIFNVAANTGIGLLEAAKEVDRWVIGVDSDQALMYESTDPEIS 258 Query: 283 NLIVTSAIKKIDMAILGAVKKLQDGTLEMGKRDVLGFVEDGVGIAENDIYKNVFPADLQA 342 N IVTS +K +D +I +K G L G+ + LG E GVGIA+N Y+ + P L++ Sbjct: 259 NHIVTSMMKNVDNSIFRGLKLHLQGKLGYGQVESLGIAEGGVGIADNKYYRQIVPEHLRS 318 Query: 343 KVEEVKQKLINKEITVDNAMGMETSEVEAIRNAVKP 378 ++ ++++K+I+ EI V M E+ +R +VKP Sbjct: 319 EIAQIEKKIISGEIKVGTVFEMSQEELNQLRASVKP 354 >C5CJ31.1 C5CJ31_9THEM Basic membrane lipoprotein Length = 360 Score = 288 bits (737), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 150/343 (43%), Positives = 228/343 (66%), Gaps = 14/343 (4%) Query: 47 KLKVVLLIPGTLGDKSFFDAANSGLQKVKDELGAETKVVEMGADKTKWEPTFNDIA-AED 105 K+K VLL+ GTLGDKSFFD+A G++ ++++LG ETK++EMG + ++W PT DI+ + Sbjct: 20 KVKAVLLVNGTLGDKSFFDSAARGMKMIEEQLGVETKIIEMGYNPSEWGPTLEDISDLGE 79 Query: 106 WDVVISGGSEITEMFNATAEANPDKKFINYDTDIEEAPKNM---YNMSYSTNEVSFLAGA 162 +D++I G ++ E+ A PD +I +DT ++ + N+ Y++ Y NE SFLAGA Sbjct: 80 YDIIIVGTWQMVELVERVAPMYPDTTYIIFDTAVDYSKGNLDNVYSILYKQNEGSFLAGA 139 Query: 163 VAALATQSD-----MPNANKENVIGFVGGMDIPGINAFLVGYIQGAQYVDPDVKVAVSYA 217 +AA+ + SD +P+ + +IGF+GGMDIP IN FLVGYI+GA Y+DPD+KVA+SY Sbjct: 140 MAAMVSTSDKFKYSLPD---KKIIGFLGGMDIPVINDFLVGYIEGALYIDPDIKVAISYV 196 Query: 218 GDFVNPAKGKELSLIQYNSGVDVIFNVAGGTGLGIFDAAKEKTKYAIGVDSDQAMLLKDT 277 G + +PAKGKE +L Y G DV+F VAG TG G+ AAKE ++AIGVDSD +L ++ Sbjct: 197 GAWNDPAKGKEFTLSMYRQGADVVFAVAGETGNGVLAAAKEMDRWAIGVDSDMQLLYEEK 256 Query: 278 DSEKANLIVTSAIKKIDMAILGAVKKLQDGTLEMGKRDVLGFVEDGVGIAENDIYKNVFP 337 D + ++S +K +D ++L AVK +G L +G+ + LG E GVG+A+N ++ + Sbjct: 257 DMDIVKHTLSSMLKNVDYSLLRAVKLYLEGKLPVGQVEALGLKERGVGLADNPYFREIME 316 Query: 338 AD--LQAKVEEVKQKLINKEITVDNAMGMETSEVEAIRNAVKP 378 AD + K+ E++ +I +I V +A GM E+ IR+AV+P Sbjct: 317 ADPWILVKLRELELAIIRGDIKVTSAYGMSNEELNKIRDAVRP 359 >C5EJJ9.1 C5EJJ9_9FIRM Basic membrane lipoprotein Length = 391 Score = 286 bits (731), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 152/335 (45%), Positives = 215/335 (64%), Gaps = 4/335 (1%) Query: 48 LKVVLLIPGTLGDKSFFDAANSGLQKVKDELGAETKVVEMGADKTKWEPTFNDIA-AEDW 106 LKV LLI G LGD+S++D+A +G++ +K+ G ETK+VEMG+D TK+EPT + + + DW Sbjct: 57 LKVALLINGVLGDQSYYDSAAAGMEAIKESYGCETKIVEMGSDATKYEPTITEYSESGDW 116 Query: 107 DVVISGGSEITEMFNATAEANPDKKFINYDTDIEEAPKNM---YNMSYSTNEVSFLAGAV 163 D++I + + E+ A+ PD+K+I + + NM Y + Y NE ++LAG V Sbjct: 117 DIIILCTNTLKEILQEIAQDYPDQKYILFGARADYENFNMSNVYTVDYLANEGAYLAGVV 176 Query: 164 AALATQSDMPNANKENVIGFVGGMDIPGINAFLVGYIQGAQYVDPDVKVAVSYAGDFVNP 223 AA T S N+E VIGFVGG D+ IN FL+G+I+GA+ VD D+KV SY GD+VN Sbjct: 177 AAGLTTSKAEGMNEEKVIGFVGGQDVTVINDFLIGFIEGAKSVDSDIKVITSYVGDYVNT 236 Query: 224 AKGKELSLIQYNSGVDVIFNVAGGTGLGIFDAAKEKTKYAIGVDSDQAMLLKDTDSEKAN 283 KGKEL+L Q G DVIF AGG G G+F+AA EK AIG D+DQ +LK D A+ Sbjct: 237 GKGKELALTQIQQGADVIFQCAGGAGTGVFEAASEKGVLAIGCDADQYEVLKSMDDPLAD 296 Query: 284 LIVTSAIKKIDMAILGAVKKLQDGTLEMGKRDVLGFVEDGVGIAENDIYKNVFPADLQAK 343 +I TS +K++ ++I AV DGTL G +++G E+ GIA ND YK + P ++ A Sbjct: 297 VIATSVMKRVGVSIERAVGMAIDGTLPYGSFELVGVKENVTGIAVNDNYKTIVPDEIVAS 356 Query: 344 VEEVKQKLINKEITVDNAMGMETSEVEAIRNAVKP 378 E+ ++ +++ I V A+GM T EV IRN+VKP Sbjct: 357 EEQAEKAIVDGTIKVSTALGMTTEEVSEIRNSVKP 391 >C4WPC0.1 C4WPC0_9RHIZ Basic membrane protein A Length = 408 Score = 283 bits (725), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 149/336 (44%), Positives = 217/336 (64%), Gaps = 8/336 (2%) Query: 49 KVVLLIPGTLGDKSFFDAANSGLQKVKDELG--AETKVVEMGADKTKWEPTFNDIAAEDW 106 K++L+I G LGDKSFFD+A G++ +KD+ G ETK++E+G D TKWEP F D + +DW Sbjct: 75 KILLIINGALGDKSFFDSAAKGMKMIKDKYGDDVETKILEIGDDPTKWEPVFLDASEQDW 134 Query: 107 DVVISGGSEITEMFNATAEANPDKKFINYDTDI---EEAPKNMYNMSYSTNEVSFLAGAV 163 D++I G +++E + A+ PDKK+I YD + E N+Y++ Y NE S+L G + Sbjct: 135 DLIIGGTYQMSETVGSVAQQYPDKKYILYDASVPYEEGGYDNVYSIQYKQNEGSYLGGML 194 Query: 164 AA-LATQSDMPNANKENVIGFVGGMDIPGINAFLVGYIQGAQYVDPDVKVAVSYAGDFVN 222 AA L + + + K +GF+GGMDIP IN FLVGYI GAQ + PD K+A+SYAG F++ Sbjct: 195 AASLLKEGKLGDTGKN--LGFLGGMDIPVINDFLVGYIAGAQAIQPDAKIAISYAGSFMD 252 Query: 223 PAKGKELSLIQYNSGVDVIFNVAGGTGLGIFDAAKEKTKYAIGVDSDQAMLLKDTDSEKA 282 AKGKEL L QY SGV + F VA TGLG AAKE KY +GVDSDQ + KD+D A Sbjct: 253 AAKGKELGLAQYRSGVSLGFVVASQTGLGQLSAAKETGKYVLGVDSDQEAIFKDSDPAIA 312 Query: 283 NLIVTSAIKKIDMAILGAVKKLQDGTLEMGKRDVLGFVEDGVGIAENDIYKNVFPADLQA 342 +V+S +K +D+++L A ++ + G L GK + LG E VGI ++ ++ +++ Sbjct: 313 KQVVSSVLKNVDVSLLQAYERFKAGDLPFGKAEALGLKEGAVGIVQDGNMASMATQEMKD 372 Query: 343 KVEEVKQKLINKEITVDNAMGMETSEVEAIRNAVKP 378 +++ ++ +ITV A GM T ++ AIRN V+P Sbjct: 373 AIKKASDEISEGKITVPTAFGMSTEDLNAIRNKVRP 408 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.312 0.131 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,977,575,727 Number of extensions: 84026958 Number of successful extensions: 197004 Number of sequences better than 1.0e-05: 1027 Number of HSP's gapped: 194917 Number of HSP's successfully gapped: 1035 Length of query: 378 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 241 Effective length of database: 1,770,017,148 Effective search space: 426574132668 Effective search space used: 426574132668 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 132 (55.5 bits)