BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0382.0010.p (520 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C5EWI0.1 C5EWI0_9FIRM Sugar ABC-transporter 568 e-160 B0PG52.1 B0PG52_9FIRM Putative uncharacterized protein 567 e-159 C5EM65.1 C5EM65_9FIRM Sugar ABC transporter 566 e-159 C5EJJ8.1 C5EJJ8_9FIRM ABC transporter 565 e-159 C5EW94.1 C5EW94_9FIRM ABC-type sugar transport system 554 e-155 >C5EWI0.1 C5EWI0_9FIRM Sugar ABC-transporter Length = 516 Score = 568 bits (1463), Expect = e-160, Method: Compositional matrix adjust. Identities = 277/516 (53%), Positives = 372/516 (72%), Gaps = 2/516 (0%) Query: 1 MANALLEMRGITKVYPNGVVANKNVEFSLREGEIHAIAGENGAGKSTLMKIMFGMEEPSD 60 M + +LEM+ I+K+Y NG+ ANK+V F+L++GEIHA+ GENGAGKSTLMK++FGME PS Sbjct: 1 MQDYILEMKDISKIYGNGIAANKDVNFNLKKGEIHALVGENGAGKSTLMKVLFGMEPPSS 60 Query: 61 GEIYIRGDKVKLQSPQDAIDRGIGMVHQHFMLVPSFTVAENMVLGMEPRKGVGFDYSEAV 120 GEI +RG+ V+ S +DAI GIGMVHQHFMLV SFT A+N++LGMEP+KG+ EAV Sbjct: 61 GEIILRGESVRFSSSKDAIAHGIGMVHQHFMLVESFTAAQNIILGMEPKKGLFVSEEEAV 120 Query: 121 RLTEETARKYNLAVNPKAKVEDLTVGMKQKVEILKALVRGAQILILDEPTAVLTPQETEE 180 R T+E + +YNL V +A L VG+KQK+EILKAL RGA+ILILDEPTAVL PQET++ Sbjct: 121 RFTKELSSRYNLEVEAEAVTRTLPVGVKQKIEILKALARGAEILILDEPTAVLAPQETDQ 180 Query: 181 LFHELQQLKGQGHTIVFISHKLKEVKAICDRITIMRGGRSEGVFQTSEVSEQEISRLMVG 240 LF EL LK QGHTIVFISHK+ E+K I DRIT+MR G G +T +V+E+EIS +++G Sbjct: 181 LFEELIHLKEQGHTIVFISHKIPEIKRISDRITVMRAGCFVGCCETKDVTEKEISSMIMG 240 Query: 241 RDVVLKYEKDKTSPGQPVLAVDRLGVTDSQGKALLSEVSFSVREGQIVGIAGVEGNGQTQ 300 ++ K + G + + + TD +L +++F VR G I GIAGV+GNGQ + Sbjct: 241 CEMDTSIAKSRPKAGDIKIEAEHVSYTDRNKIQILKDLNFGVRGGMIFGIAGVQGNGQVE 300 Query: 301 LIEALTGGLRGVSASGSVRVQGTDIRDADILDIRGLGVSYIPEDRMRQGSAGEASIADNL 360 L++ +T + G +R+ G + + +IR + Y+PEDRM QG AG+ SIA+N+ Sbjct: 301 LVDLMTK--KRALKQGDIRLNGKSVAGLSLQEIRRMQFGYVPEDRMDQGIAGQESIAENM 358 Query: 361 ISTRYRSKDMNKGPFLKGSRIAALAASLVEEFKVRCSGPQQPIGMLSGGNMQKVVVAREC 420 +S RY S++ +G L +I A + +++RC G Q +GMLSGGNMQKVVVAREC Sbjct: 359 VSNRYASREFCRGGLLDYKKIDTFADENIRSYEIRCFGNSQNVGMLSGGNMQKVVVAREC 418 Query: 421 STNPQLLIAEQPTRGVDIGAAQFIHQKLLELRSDHCAIVLVSADLNEILELSDSLLVMYE 480 S P++LIAEQPTRGVDIGAA IH+K++ELR + CA++L+SADL+E L+LSD + VMYE Sbjct: 419 SHEPEVLIAEQPTRGVDIGAAHIIHKKIMELRDNGCAVLLISADLSEALKLSDVIAVMYE 478 Query: 481 GQIVAYFDKPSAVSEEELGLYMLGIHRQDKEQTGRA 516 G+IVAYFD ++EE+LGLYMLG+ R +EQ RA Sbjct: 479 GEIVAYFDDTEGLNEEKLGLYMLGLERHSEEQIRRA 514 >B0PG52.1 B0PG52_9FIRM Putative uncharacterized protein Length = 516 Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust. Identities = 275/504 (54%), Positives = 383/504 (75%), Gaps = 2/504 (0%) Query: 5 LLEMRGITKVYPNGVVANKNVEFSLREGEIHAIAGENGAGKSTLMKIMFGMEEPSDGEIY 64 +L + + KVY NGV+ANK++ FS ++GEIHAI GENGAGKSTLMK+++G+E+PS+G IY Sbjct: 4 ILRVEHLMKVYGNGVMANKDINFSAKKGEIHAICGENGAGKSTLMKMLYGIEQPSEGSIY 63 Query: 65 IRGDKVKLQSPQDAIDRGIGMVHQHFMLVPSFTVAENMVLGMEPRKGVGFDYSEAVRLTE 124 ++G+KV L S AI+ IGMVHQHFMLVPS TVAEN+VLG+EP++G+ FD +A+++TE Sbjct: 64 VKGEKVNLTSSAKAIEHSIGMVHQHFMLVPSLTVAENVVLGVEPKRGIRFDAKKAIQMTE 123 Query: 125 ETARKYNLAVNPKAKVEDLTVGMKQKVEILKALVRGAQILILDEPTAVLTPQETEELFHE 184 E A+KYNL V + KVE+++VG+KQ+VEI+KAL++GA+ILILDEPT VLTPQETEELF E Sbjct: 124 EIAQKYNLPVPAQEKVENISVGLKQRVEIIKALLKGAEILILDEPTTVLTPQETEELFVE 183 Query: 185 LQQLKGQGHTIVFISHKLKEVKAICDRITIMRGGRSEGVFQTSEVSEQEISRLMVGRDVV 244 L+ L+ QGHTI+FISHKL EVK +CDR+T+MR GR ++V+E +ISR+MVGRDVV Sbjct: 184 LKHLRDQGHTILFISHKLYEVKKLCDRVTVMRAGRMIATRNIADVTEADISRMMVGRDVV 243 Query: 245 LKYEKDKTSPGQPVLAVDRLGVTDSQGKALLSEVSFSVREGQIVGIAGVEGNGQTQLIEA 304 EK+K PG VL V + G+ LL V+ +V++G+I+G+AGVEGNGQ ++EA Sbjct: 244 EVIEKEKAKPGAVVLKVRGATCQNDTGRKLLDNVTLNVKKGEILGLAGVEGNGQHDILEA 303 Query: 305 LTGGLRGVSASGSVRVQGTDIRDADILDIRGLGVSYIPEDRMRQGSAGEASIADNLISTR 364 + G+ ++A G++ + G DI + I +IR G+S+IPEDRM +G+A + SIA+N+++ Sbjct: 304 I-AGVEKLTA-GTIELNGKDITNHSIREIRDAGISHIPEDRMAEGTAKKLSIANNILAGS 361 Query: 365 YRSKDMNKGPFLKGSRIAALAASLVEEFKVRCSGPQQPIGMLSGGNMQKVVVARECSTNP 424 +RS K I A +L+++++V+CSG +Q IGMLSGGN+QKVVVARE S P Sbjct: 362 HRSSRFTGKVLFKMKAIREEADTLIKQYQVKCSGREQEIGMLSGGNIQKVVVAREFSVEP 421 Query: 425 QLLIAEQPTRGVDIGAAQFIHQKLLELRSDHCAIVLVSADLNEILELSDSLLVMYEGQIV 484 ++++ +QPTRG+DIGAA FI +L++LR + AI++ SADLNE+L LSDSL V + G+I Sbjct: 422 EVILVDQPTRGIDIGAATFIRNRLVQLRDEGKAILVNSADLNEVLGLSDSLAVFHNGRIT 481 Query: 485 AYFDKPSAVSEEELGLYMLGIHRQ 508 YF+ S ++EEELGLYMLG+ Q Sbjct: 482 GYFEDSSTLTEEELGLYMLGVKEQ 505 >C5EM65.1 C5EM65_9FIRM Sugar ABC transporter Length = 518 Score = 567 bits (1460), Expect = e-159, Method: Compositional matrix adjust. Identities = 285/516 (55%), Positives = 371/516 (71%), Gaps = 2/516 (0%) Query: 1 MANALLEMRGITKVYPNGVVANKNVEFSLREGEIHAIAGENGAGKSTLMKIMFGMEEPSD 60 MA L M I K+YPNGV+ANK+V S+ GEIHA++GENGAGKSTLMKI+FG E+P+ Sbjct: 1 MAEEALRMSHIVKIYPNGVMANKDVTLSVNLGEIHALSGENGAGKSTLMKILFGEEQPTS 60 Query: 61 GEIYIRGDKVKLQSPQDAIDRGIGMVHQHFMLVPSFTVAENMVLGMEPRKGVGFDYSEAV 120 GEIY+ G +V + SPQ AI GIGMVHQHFMLV S TVAEN++LGMEPRKGV D + A Sbjct: 61 GEIYVNGKQVHMSSPQMAIKMGIGMVHQHFMLVSSLTVAENIILGMEPRKGVMVDLAFAR 120 Query: 121 RLTEETARKYNLAVNPKAKVEDLTVGMKQKVEILKALVRGAQILILDEPTAVLTPQETEE 180 + EE RKYNL V+P +VEDLTVG KQKVEILKAL RGA+ILILDEPTAVLTPQET+E Sbjct: 121 KQVEEMGRKYNLYVDPDKRVEDLTVGQKQKVEILKALFRGAKILILDEPTAVLTPQETQE 180 Query: 181 LFHELQQLKGQGHTIVFISHKLKEVKAICDRITIMRGGRSEGVFQTSEVSEQEISRLMVG 240 LF EL L+ G+TI+FISHKL+E+K IC RITI+R G + GV + +VSEQ+ISRLMVG Sbjct: 181 LFDELLHLRDNGYTIIFISHKLQEIKQICSRITIIRRGTTMGVHEVDQVSEQDISRLMVG 240 Query: 241 RDVVLKYEKDKTSPGQPVLAVDRLGVTDSQGKALLSEVSFSVREGQIVGIAGVEGNGQTQ 300 RDV+L EK+ SP + ++ V L V D GK + VSFS+R+G+I+GIAGVEGNGQT+ Sbjct: 241 RDVILNVEKEPASPKEALVKVRDLVVVDENGKHAVDHVSFSLRKGEILGIAGVEGNGQTE 300 Query: 301 LIEALTGGLRGVSASGSVRVQGTDIRDADILDIRGLGVSYIPEDRMRQGSAGEASIADNL 360 L+ A+TG G + G++ + G DIR + IR L +++IP DRM G A SI +N+ Sbjct: 301 LVRAITG--MGAYSHGTIEISGQDIRGYSVEKIRNLKLAHIPADRMTMGMAPHLSITENM 358 Query: 361 ISTRYRSKDMNKGPFLKGSRIAALAASLVEEFKVRCSGPQQPIGMLSGGNMQKVVVAREC 420 I+ + K K + +V+++ + C I LSGGN+QK V+ARE Sbjct: 359 IADKLGWKRFFKNGVRDKRAVREYGDEMVKQYLIFCKSQDVAINSLSGGNIQKAVLAREL 418 Query: 421 STNPQLLIAEQPTRGVDIGAAQFIHQKLLELRSDHCAIVLVSADLNEILELSDSLLVMYE 480 S +PQ++IA+QPTRGVD+GA +FI ++L+E+R + ++LV++DLNE+L LSDSL+VMYE Sbjct: 419 SGSPQVIIADQPTRGVDVGATEFIRRRLVEMRDEGNGVILVTSDLNEVLGLSDSLIVMYE 478 Query: 481 GQIVAYFDKPSAVSEEELGLYMLGIHRQDKEQTGRA 516 G+IVAY S ++E +LG YMLGI Q +E+ A Sbjct: 479 GRIVAYISDTSQMTEAQLGTYMLGIQVQSEEEIKEA 514 >C5EJJ8.1 C5EJJ8_9FIRM ABC transporter Length = 510 Score = 565 bits (1456), Expect = e-159, Method: Compositional matrix adjust. Identities = 285/505 (56%), Positives = 372/505 (73%), Gaps = 2/505 (0%) Query: 5 LLEMRGITKVYPNGVVANKNVEFSLREGEIHAIAGENGAGKSTLMKIMFGMEEPSDGEIY 64 +LEMR ITKVYP G+VAN +V+FSLR+GEIHA+AGENGAGK+TLMK++FG+E+P +GEI Sbjct: 6 ILEMRNITKVYPTGLVANNHVDFSLRKGEIHALAGENGAGKTTLMKVLFGLEKPDEGEII 65 Query: 65 IRGDKVKLQSPQDAIDRGIGMVHQHFMLVPSFTVAENMVLGMEPRKGVGFDYSEAVRLTE 124 + G V + +P DAI +GIGMVHQHFML+PS TVAEN+VLG EP K D A + Sbjct: 66 LSGASVSIHNPIDAIHKGIGMVHQHFMLIPSLTVAENIVLGDEPGKYGVLDNRMASEMAR 125 Query: 125 ETARKYNLAVNPKAKVEDLTVGMKQKVEILKALVRGAQILILDEPTAVLTPQETEELFHE 184 +KYN+ V+P+ V DL VG++QKVEILKAL +GA ILILDEPTAVLTPQET+ELF E Sbjct: 126 TIGQKYNMNVDPEDVVADLPVGIRQKVEILKALHKGADILILDEPTAVLTPQETKELFAE 185 Query: 185 LQQLKGQGHTIVFISHKLKEVKAICDRITIMRGGRSEGVFQTSEVSEQEISRLMVGRDVV 244 L+ L+ +GHTIVFISHKL EVK +CDRITI+R G+ GV+ +VSEQ+IS LMVGR++ Sbjct: 186 LKGLRDKGHTIVFISHKLNEVKELCDRITILRDGKDVGVYDVKDVSEQKISSLMVGRNLE 245 Query: 245 LKYEKDKTSPGQPVLAVDRLGVTDSQGKALLSEVSFSVREGQIVGIAGVEGNGQTQLIEA 304 + +KD PG+ VL V L + G+ +L +++F +R G+IVGIA VEGNGQ +L E Sbjct: 246 VNTQKDPVEPGRIVLDVRNLNKENESGRQVLHDINFQIRAGEIVGIAAVEGNGQKELSE- 304 Query: 305 LTGGLRGVSASGSVRVQGTDIRDADILDIRGLGVSYIPEDRMRQGSAGEASIADNLISTR 364 +T GL G S G + V GT I++ I +IRG+GVS++PEDR+ G G+AS++DNLI+ Sbjct: 305 ITAGLEGFS-EGDITVSGTSIKNKTIKEIRGMGVSHVPEDRVAVGLVGDASVSDNLITYV 363 Query: 365 YRSKDMNKGPFLKGSRIAALAASLVEEFKVRCSGPQQPIGMLSGGNMQKVVVARECSTNP 424 Y K+ + L +IA A L E+F V+ + + MLSGGNMQKVVVARE STNP Sbjct: 364 YDKKEYSSHGLLDRKKIAGYARDLREKFLVKSKDGTEAVRMLSGGNMQKVVVAREFSTNP 423 Query: 425 QLLIAEQPTRGVDIGAAQFIHQKLLELRSDHCAIVLVSADLNEILELSDSLLVMYEGQIV 484 QL+I QPTRG+D+GA +F+ QK+LELRS A++LVSADLNE+ ELSD L+VM++G+I Sbjct: 424 QLIILNQPTRGIDVGATEFVRQKVLELRSRGSAVLLVSADLNELFELSDRLMVMFDGRIT 483 Query: 485 AYFDKPSAVSEEELGLYMLGIHRQD 509 A V+E ELG YMLG+ +Q+ Sbjct: 484 ADIKDVGQVTENELGEYMLGLKKQE 508 >C5EW94.1 C5EW94_9FIRM ABC-type sugar transport system Length = 519 Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust. Identities = 273/517 (52%), Positives = 375/517 (72%), Gaps = 3/517 (0%) Query: 1 MANALLEMRGITKVYPNGVVANKNVEFSLREGEIHAIAGENGAGKSTLMKIMFGMEEPSD 60 M +EM+GITK+YPNGVVANK+V+FS+ GEIHA+ GENGAGKSTLMK++FG+E+ Sbjct: 1 MQTPAIEMKGITKIYPNGVVANKDVDFSVDYGEIHAVMGENGAGKSTLMKMLFGLEKIDK 60 Query: 61 GEIYIRGDKVKLQSPQDAIDRGIGMVHQHFMLVPSFTVAENMVLGMEPRKGVGFDYSEAV 120 GE+ G +++ SP +AI IGMVHQ FMLVPS TV+ENM+L EP+KG+ + ++AV Sbjct: 61 GEVLFEGKPIRINSPAEAIKLKIGMVHQEFMLVPSLTVSENMMLREEPKKGIFINRAKAV 120 Query: 121 RLTEETARKYNLAVNPKAKVEDLTVGMKQKVEILKALVRGAQILILDEPTAVLTPQETEE 180 T ++ Y L ++P +VEDL VGMKQ+VEILKAL RGA+ILILDEPTAVLTPQETEE Sbjct: 121 EETRRISQMYQLPIDPDTRVEDLPVGMKQRVEILKALYRGARILILDEPTAVLTPQETEE 180 Query: 181 LFHELQQLKGQGHTIVFISHKLKEVKAICDRITIMRGGRSEGVFQTSEVSEQEISRLMVG 240 LF +L LK GHT++FISHK++EVK ICDRITIM+ GRS GV+ +++E +ISRLMVG Sbjct: 181 LFRQLILLKEHGHTVIFISHKIREVKQICDRITIMKNGRSMGVYNVKDITESDISRLMVG 240 Query: 241 RDVVLKYEKDKTSPGQPVLAVDRLGVTDSQGKALLSEVSFSVREGQIVGIAGVEGNGQTQ 300 R++ + EK + P VL+V+ L +G+ +++VSF+VR G+I+GIAGVEGNGQ + Sbjct: 241 REIKMNLEKKQARPRDVVLSVEHLYHGYGEGRLKVNDVSFTVRSGEILGIAGVEGNGQRE 300 Query: 301 LIEALTGGLRGVSASGSVRVQGTDIRDADILDIRGLG-VSYIPEDRMRQGSAGEASIADN 359 L+E +T GL+ + G +R++ D+ I IR + +YIP+DR+ G A EA+I +N Sbjct: 301 LLECIT-GLQPIQ-RGKIRIKHNDVSRMSIRKIRDIAKTAYIPQDRLLFGVASEATIKEN 358 Query: 360 LISTRYRSKDMNKGPFLKGSRIAALAASLVEEFKVRCSGPQQPIGMLSGGNMQKVVVARE 419 L++ R +++K +K ++A + L++EF V+C +Q + MLSGGN+QKVVVARE Sbjct: 359 LLANRLSDPEISKAGIVKDKKLAQKSRELIQEFTVKCDSEKQTVDMLSGGNIQKVVVARE 418 Query: 420 CSTNPQLLIAEQPTRGVDIGAAQFIHQKLLELRSDHCAIVLVSADLNEILELSDSLLVMY 479 S L++ +QP+RG+DIGA +FIH+K+ ELR AI++ SADL EI+ELSDSL+VMY Sbjct: 419 LSMPRDLIVIDQPSRGIDIGATKFIHEKIFELRDRDAAILISSADLAEIMELSDSLIVMY 478 Query: 480 EGQIVAYFDKPSAVSEEELGLYMLGIHRQDKEQTGRA 516 EG+I AYF ++EE LG YMLGI +Q E+ A Sbjct: 479 EGEIAAYFKSLQGITEETLGEYMLGIKKQTPEEIKEA 515 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.135 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,906,692,104 Number of extensions: 121931733 Number of successful extensions: 881033 Number of sequences better than 1.0e-05: 88567 Number of HSP's gapped: 741519 Number of HSP's successfully gapped: 118412 Length of query: 520 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 380 Effective length of database: 1,741,754,103 Effective search space: 661866559140 Effective search space used: 661866559140 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 134 (56.2 bits)