BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0382.0009.p (348 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C5EWH9.1 C5EWH9_9FIRM Inner-membrane translocator 328 6e-88 C2BFV9.1 C2BFV9_9FIRM Inner-membrane translocator 323 2e-86 C5EJJ7.1 C5EJJ7_9FIRM Inner-membrane translocator 268 6e-70 C5EM64.1 C5EM64_9FIRM Bacterial inner-membrane translocator 246 2e-63 C2KXJ9.1 C2KXJ9_9FIRM ABC superfamily ATP binding cassette trans... 244 1e-62 >C5EWH9.1 C5EWH9_9FIRM Inner-membrane translocator Length = 347 Score = 328 bits (840), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 162/316 (51%), Positives = 230/316 (72%) Query: 31 SDQPVKTIGIFLLEPLSTKGHIGNVIEMAIPLMFTGLAVSLLFRANMFNLGAEGIFYFSG 90 SDQPV++I IFLL PLS+K ++GN++E A+PL+F+GL+++L+FRA++FNLG EGIF+ SG Sbjct: 31 SDQPVESIRIFLLAPLSSKRYLGNIVETAVPLIFSGLSMALMFRASLFNLGGEGIFFISG 90 Query: 91 VVASVLAIHLSLGSWLHPLVAIAAGSIVGALLSAIPGILKAKWNANELVTSLMFNNILFG 150 + S+LAI L + + P V IA G++ G ++ +PG+LKAK+ ANE+VTSLM NNIL G Sbjct: 91 ITGSILAIWLKMPPVIFPAVCIAVGAVTGMVIMLVPGVLKAKYGANEMVTSLMMNNILLG 150 Query: 151 VGLYLLNYHLRDAKAFANVSFKFEKTAQLSKIFPGTRIHTGXXXXXXXXXXAHLFLYRTK 210 VGLYLLN +RD K + VS+K+ K A L+ + PGTRIH G ++F++++K Sbjct: 151 VGLYLLNNMMRDPKVASLVSYKYRKNALLANLVPGTRIHVGFLIALACAVLVYIFMFKSK 210 Query: 211 WGYELRMTGANREFARYSGMKTAKVIILVHLIAGFIAGMGGSVEVLGMYSRFQWTSLPGY 270 WGYE+RMTG N FA YSG+ +VII+VH++AG +AG GG +E +GM+ RF+WT+LPGY Sbjct: 211 WGYEIRMTGNNARFASYSGINVTRVIIIVHVVAGAVAGAGGLIECIGMHKRFEWTALPGY 270 Query: 271 GLDGALVAMLAKNNPLSVIASALFLAYIRIGADLMARLSDVPSEMXXXXXXXXXXXXXXE 330 G DGA++AMLA N+P+ VI +A F++Y+RIGADL+ R SD+P+EM E Sbjct: 271 GFDGAMIAMLAGNHPIGVIGAAFFVSYLRIGADLVNRSSDIPTEMIAILQSIIILLISAE 330 Query: 331 QFLKFWKNRMLLKEAK 346 +FL ++ + KEAK Sbjct: 331 RFLHKYRQNWIEKEAK 346 >C2BFV9.1 C2BFV9_9FIRM Inner-membrane translocator Length = 356 Score = 323 bits (828), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 152/317 (47%), Positives = 221/317 (69%) Query: 31 SDQPVKTIGIFLLEPLSTKGHIGNVIEMAIPLMFTGLAVSLLFRANMFNLGAEGIFYFSG 90 S PV I F++ P++ K +IGNV+ AIPL+F+GLA+SLLF ++ FN+GAEG+FYFSG Sbjct: 32 SQNPVSAINNFIIGPITKKRYIGNVVTTAIPLIFSGLAMSLLFASSQFNMGAEGVFYFSG 91 Query: 91 VVASVLAIHLSLGSWLHPLVAIAAGSIVGALLSAIPGILKAKWNANELVTSLMFNNILFG 150 ++A+++ I + L +H +AI I+GAL+ + G++KAK+ +ELV SLMFN+IL+G Sbjct: 92 LIAAIIGIVIKLPVVVHAGLAITVAGIIGALVIGLIGLMKAKYGTSELVVSLMFNSILYG 151 Query: 151 VGLYLLNYHLRDAKAFANVSFKFEKTAQLSKIFPGTRIHTGXXXXXXXXXXAHLFLYRTK 210 +GLY+LNY+ R++ SF K+A L KI PGT IH+G H + ++K Sbjct: 152 IGLYILNYYFRESNTVVLKSFAINKSALLHKILPGTSIHSGLILALLAIFVCHFIMEKSK 211 Query: 211 WGYELRMTGANREFARYSGMKTAKVIILVHLIAGFIAGMGGSVEVLGMYSRFQWTSLPGY 270 GYE+ + G N EFA+YSG+ KVI+ V LIAG ++G+GG VE+LG+Y F+WT+LPG Sbjct: 212 LGYEINLIGTNPEFAKYSGINIKKVIVSVSLIAGLLSGIGGGVEILGIYDSFKWTALPGL 271 Query: 271 GLDGALVAMLAKNNPLSVIASALFLAYIRIGADLMARLSDVPSEMXXXXXXXXXXXXXXE 330 G DGAL+AMLAKN P +V+ +ALFL+YIRIGADLM+RL+D+P+EM Sbjct: 272 GFDGALIAMLAKNKPKNVLPAALFLSYIRIGADLMSRLTDIPAEMVGIMQGIIILLISGR 331 Query: 331 QFLKFWKNRMLLKEAKE 347 +FL+ +KN+++L+E + Sbjct: 332 RFLQNYKNKLILEEVNK 348 >C5EJJ7.1 C5EJJ7_9FIRM Inner-membrane translocator Length = 353 Score = 268 bits (685), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 131/316 (41%), Positives = 189/316 (59%) Query: 31 SDQPVKTIGIFLLEPLSTKGHIGNVIEMAIPLMFTGLAVSLLFRANMFNLGAEGIFYFSG 90 S P+ ++G FL P + IGN+IE+AIPL FTGLA+ ++F AN N EG F+ Sbjct: 34 SGSPMASLGTFLFGPFQSVSRIGNIIELAIPLTFTGLAICIMFEANQINCAVEGSFFMGA 93 Query: 91 VVASVLAIHLSLGSWLHPLVAIAAGSIVGALLSAIPGILKAKWNANELVTSLMFNNILFG 150 V+A+ +++ L L +H LV A ++G L+ +P ILK K+ ANELV+SLM N I+ Sbjct: 94 VIATAVSVFLPLPFGIHQLVIFLASGVIGGLICLVPAILKVKFQANELVSSLMLNYIVLY 153 Query: 151 VGLYLLNYHLRDAKAFANVSFKFEKTAQLSKIFPGTRIHTGXXXXXXXXXXAHLFLYRTK 210 GL+++N L D++A S+ ++++L I P TRIH G +L +YRT+ Sbjct: 154 SGLFIVNRFLVDSQAGYFASYSISRSSKLPPIVPHTRIHFGIVIAVLCVIFIYLVMYRTR 213 Query: 211 WGYELRMTGANREFARYSGMKTAKVIILVHLIAGFIAGMGGSVEVLGMYSRFQWTSLPGY 270 GY +RM G N FARY+G+ VI I GFI GM GS+E+LGMY RFQ+T+ P Y Sbjct: 214 LGYAIRMAGKNENFARYTGISVLTVIFASQAIGGFIGGMAGSIEILGMYRRFQYTASPQY 273 Query: 271 GLDGALVAMLAKNNPLSVIASALFLAYIRIGADLMARLSDVPSEMXXXXXXXXXXXXXXE 330 G DG ++A LA P + +ALFLAYIRIG+D+++R +DVP E+ + Sbjct: 274 GFDGIIIATLADYKPQMIPVAALFLAYIRIGSDILSRTTDVPVEIVSVVQAIAVLFVASK 333 Query: 331 QFLKFWKNRMLLKEAK 346 FL +K +++ AK Sbjct: 334 LFLNKYKQWAIVRAAK 349 >C5EM64.1 C5EM64_9FIRM Bacterial inner-membrane translocator Length = 359 Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 135/316 (42%), Positives = 193/316 (61%) Query: 31 SDQPVKTIGIFLLEPLSTKGHIGNVIEMAIPLMFTGLAVSLLFRANMFNLGAEGIFYFSG 90 SD P I F L P ++ +GN+IE A PLMFT LAV ++F + F++ AEG F+ Sbjct: 35 SDDPWTAISSFFLGPFTSLRRVGNIIEAASPLMFTALAVIIIFGSGQFSMIAEGSFFIGI 94 Query: 91 VVASVLAIHLSLGSWLHPLVAIAAGSIVGALLSAIPGILKAKWNANELVTSLMFNNILFG 150 A V+AI L +HP AI G GA+++ +P +LK KWN +ELVTS+MFN ++ Sbjct: 95 TGAMVVAIACKLPGGIHPAAAILFGGFCGAMVALVPALLKMKWNVSELVTSIMFNYVVQF 154 Query: 151 VGLYLLNYHLRDAKAFANVSFKFEKTAQLSKIFPGTRIHTGXXXXXXXXXXAHLFLYRTK 210 +Y+++YH R+ + + S +FEKT++L I GTRIH G FLYRT Sbjct: 155 FAIYMVSYHFREVSSSSLASLEFEKTSRLPVILDGTRIHAGIVLGIVLCVLVWFFLYRTS 214 Query: 211 WGYELRMTGANREFARYSGMKTAKVIILVHLIAGFIAGMGGSVEVLGMYSRFQWTSLPGY 270 G LR+TG N FARY+G+K +++ ++AG IAGMGG E+LGMY+RF+WT+ PGY Sbjct: 215 LGTRLRITGDNPLFARYAGLKVTGLMVAAQVLAGAIAGMGGGAELLGMYNRFKWTTTPGY 274 Query: 271 GLDGALVAMLAKNNPLSVIASALFLAYIRIGADLMARLSDVPSEMXXXXXXXXXXXXXXE 330 G G +VA+LA++NPL V +A F+ Y+ +GAD+MAR SDV E+ + Sbjct: 275 GWTGIVVALLARSNPLLVPLAAAFIGYLNVGADIMARSSDVGREVVDIIQGVMMFLIAAD 334 Query: 331 QFLKFWKNRMLLKEAK 346 LK W+ +++K AK Sbjct: 335 ALLKGWRQHLIVKAAK 350 >C2KXJ9.1 C2KXJ9_9FIRM ABC superfamily ATP binding cassette transporter, membrane protein Length = 415 Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 126/315 (40%), Positives = 194/315 (61%) Query: 31 SDQPVKTIGIFLLEPLSTKGHIGNVIEMAIPLMFTGLAVSLLFRANMFNLGAEGIFYFSG 90 S +P I LL P + H ++ A PL+FTGLA+SL F++ F++ + Y S Sbjct: 31 SKEPWTAISYLLLGPFGSMRHFLSIFAQATPLIFTGLALSLCFKSGNFSMITDACLYISA 90 Query: 91 VVASVLAIHLSLGSWLHPLVAIAAGSIVGALLSAIPGILKAKWNANELVTSLMFNNILFG 150 V+ + LAI LSL LHPLV + +++G ++ ++P + K + ANELVTSLM N + F Sbjct: 91 VLTAALAIRLSLPFPLHPLVILLLAAVMGGMIGSLPALAKLYFKANELVTSLMLNYVFFY 150 Query: 151 VGLYLLNYHLRDAKAFANVSFKFEKTAQLSKIFPGTRIHTGXXXXXXXXXXAHLFLYRTK 210 +GL+ ++ + D +A + S K+ KTA L + G+++H G + LY+T+ Sbjct: 151 LGLFTISKYFADREAGSFASLKYAKTAVLPILVKGSKLHLGFFLALLLAVLFSILLYKTR 210 Query: 211 WGYELRMTGANREFARYSGMKTAKVIILVHLIAGFIAGMGGSVEVLGMYSRFQWTSLPGY 270 +GYELR++G+N FA+ G+ ++KVI+L ++AG +AG+GG+VE +GMY RF W P Y Sbjct: 211 FGYELRLSGSNPSFAKMVGISSSKVILLTQVLAGMVAGLGGAVEQMGMYQRFNWQESPSY 270 Query: 271 GLDGALVAMLAKNNPLSVIASALFLAYIRIGADLMARLSDVPSEMXXXXXXXXXXXXXXE 330 DG ++A+L++NNP V SALFLAYIR+GAD+M+R SDV +E+ E Sbjct: 271 AWDGVIIAILSRNNPALVPFSALFLAYIRVGADIMSRKSDVQNELVALIQALLILFVTAE 330 Query: 331 QFLKFWKNRMLLKEA 345 FL W++R +KE+ Sbjct: 331 AFLSGWEHRREVKES 345 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.140 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,659,016,519 Number of extensions: 62148203 Number of successful extensions: 274489 Number of sequences better than 1.0e-05: 1291 Number of HSP's gapped: 272960 Number of HSP's successfully gapped: 1336 Length of query: 348 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 212 Effective length of database: 1,779,438,163 Effective search space: 377240890556 Effective search space used: 377240890556 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)