BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0382.0008.p (311 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C5EWH8.1 C5EWH8_9FIRM Inner-membrane translocator 310 2e-82 B0PG50.1 B0PG50_9FIRM Putative uncharacterized protein 309 3e-82 C5EJJ6.1 C5EJJ6_9FIRM Inner-membrane translocator 298 3e-79 C5CJ34.1 C5CJ34_9THEM Inner-membrane translocator 276 1e-72 C2BFV8.1 C2BFV8_9FIRM ABC superfamily ATP binding cassette trans... 273 1e-71 >C5EWH8.1 C5EWH8_9FIRM Inner-membrane translocator Length = 302 Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 154/293 (52%), Positives = 207/293 (70%) Query: 4 LLNVILTTDFAFSVLRVTTPILFAALGALISNRAGIINIGMEGIMLVSALTGVIVSAYTH 63 + ++I T+DF +S+LRVTTP+LFA++GA++S+ AG+ NI +EG+ML++A G+ S Sbjct: 1 MTDLIFTSDFFYSILRVTTPLLFASMGAVVSDVAGVPNIALEGMMLMAAFAGMFFSYLFG 60 Query: 64 SAWXXXXXXXXXXXXXXXXXXFFTLKFKTHIILGGVAINMFASGGTVFILYLLSGDKGSS 123 SAW FFTL +KT+IILGG+AIN ASGGT+F LYL + DKG+S Sbjct: 61 SAWAGLAFAILTAVLAASVLAFFTLYYKTNIILGGIAINSLASGGTIFFLYLAAHDKGTS 120 Query: 124 TSLASKVLPSVEIPLLKDIPVLGPILSGHHILTYLSILAVLVVYYLLNRTPLGLRIRSVG 183 SL SKVLP++ IP ++DIPVLGP +SGH+ILTYLSILAV+ +YLL RT LG IR+VG Sbjct: 121 VSLDSKVLPNINIPFIEDIPVLGPAVSGHNILTYLSILAVVFTFYLLKRTALGYHIRAVG 180 Query: 184 ENPHAAQSVGVSVIKIQYTXXXXXXXXXXXXXXYMSMGYLSLFTRDMVAGRGWIAIAAES 243 E AA SVG+SV + Q +MSMGY+S F+RDMV+GRGWIA+AAE+ Sbjct: 181 EKKEAADSVGISVARTQAIALIISGVMSGLGGAFMSMGYVSWFSRDMVSGRGWIALAAEA 240 Query: 244 MGRSTTVGTALTSLLFGAADALANALQVLKIPAELIATLPYVATVIGLIIYAV 296 MG+ +GTA TSLLFG DAL+NA+ L P++L+ T+PY AT+ GL I+++ Sbjct: 241 MGQRGAIGTAATSLLFGVTDALSNAVATLGWPSDLVKTIPYCATLAGLAIFSI 293 >B0PG50.1 B0PG50_9FIRM Putative uncharacterized protein Length = 318 Score = 309 bits (791), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 155/295 (52%), Positives = 203/295 (68%) Query: 1 MNSLLNVILTTDFAFSVLRVTTPILFAALGALISNRAGIINIGMEGIMLVSALTGVIVSA 60 MN ++ ++L+ F FSVLR+TTPIL AAL ++IS R G+ NI MEG ML+SA TGV+VSA Sbjct: 1 MNEVMELVLSASFGFSVLRLTTPILLAALASVISERVGVGNITMEGTMLISAFTGVVVSA 60 Query: 61 YTHSAWXXXXXXXXXXXXXXXXXXFFTLKFKTHIILGGVAINMFASGGTVFILYLLSGDK 120 Y+ SAW + K + IL G+A+N+ SGGTVF L+ L+G + Sbjct: 61 YSGSAWLGFLAGVLAGALSGYVLAYIIFKLQVDDILAGIAVNLLGSGGTVFFLFALTGVR 120 Query: 121 GSSTSLASKVLPSVEIPLLKDIPVLGPILSGHHILTYLSILAVLVVYYLLNRTPLGLRIR 180 G STSL+SKV+PSV+IPL+KDIPVLG I+SGH+I+TYLS LAV V++YLL RTPLGLRIR Sbjct: 121 GISTSLSSKVMPSVDIPLIKDIPVLGEIVSGHNIITYLSFLAVFVIWYLLFRTPLGLRIR 180 Query: 181 SVGENPHAAQSVGVSVIKIQYTXXXXXXXXXXXXXXYMSMGYLSLFTRDMVAGRGWIAIA 240 SVGENP AA+SVGV+V K + YMSMGY+S F +D+ AGRGWI IA Sbjct: 181 SVGENPDAAKSVGVNVYKTKSIALTIAGVLSGMGGVYMSMGYVSWFAKDLTAGRGWIGIA 240 Query: 241 AESMGRSTTVGTALTSLLFGAADALANALQVLKIPAELIATLPYVATVIGLIIYA 295 A +M VG A+ S+ FG ADA AN LQ + +P++L+ +PYV T++ + +YA Sbjct: 241 AAAMSGQHPVGAAVASIFFGVADATANTLQTINLPSQLVLMIPYVVTLLAMCVYA 295 >C5EJJ6.1 C5EJJ6_9FIRM Inner-membrane translocator Length = 309 Score = 298 bits (764), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 145/297 (48%), Positives = 203/297 (68%) Query: 1 MNSLLNVILTTDFAFSVLRVTTPILFAALGALISNRAGIINIGMEGIMLVSALTGVIVSA 60 M +++ + + F +S LRVTTPILFAALG ++ +AG+ NIG+EG ML SAL GV+ SA Sbjct: 1 MEAVIRGVFSAAFLYSALRVTTPILFAALGGAVAKKAGVTNIGLEGTMLASALAGVVGSA 60 Query: 61 YTHSAWXXXXXXXXXXXXXXXXXXFFTLKFKTHIILGGVAINMFASGGTVFILYLLSGDK 120 YT S +F +K K I L G+ +NM ASG TVFI+Y+L+ DK Sbjct: 61 YTQSLLIGALCGIATGLLISGLLAYFAIKLKAEIFLTGLMMNMIASGATVFIMYMLTKDK 120 Query: 121 GSSTSLASKVLPSVEIPLLKDIPVLGPILSGHHILTYLSILAVLVVYYLLNRTPLGLRIR 180 G++T L S V P V +PL+KDIP +G ++S H+ILTYL+ L+V +V++ +NRT LG+RIR Sbjct: 121 GTTTKLKSLVFPQVPLPLIKDIPFVGEVVSNHNILTYLAFLSVALVWFFINRTKLGIRIR 180 Query: 181 SVGENPHAAQSVGVSVIKIQYTXXXXXXXXXXXXXXYMSMGYLSLFTRDMVAGRGWIAIA 240 +VGENP AA+SVG+++IK Q T Y+SMGY+S F+RDM AGRG+ A+A Sbjct: 181 AVGENPKAAESVGINIIKTQVTALLICGFLASLGGMYLSMGYVSWFSRDMTAGRGFTAVA 240 Query: 241 AESMGRSTTVGTALTSLLFGAADALANALQVLKIPAELIATLPYVATVIGLIIYAVS 297 A+ +GR+ GT + SL+FG ADALAN LQ L++PAE + +PY AT++GL+ Y+V+ Sbjct: 241 AQYLGRANAGGTLMASLVFGTADALANVLQSLRVPAEFVQMIPYAATLLGLVFYSVN 297 >C5CJ34.1 C5CJ34_9THEM Inner-membrane translocator Length = 307 Score = 276 bits (707), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 149/298 (50%), Positives = 207/298 (69%) Query: 1 MNSLLNVILTTDFAFSVLRVTTPILFAALGALISNRAGIINIGMEGIMLVSALTGVIVSA 60 MNS L+ I + +F + RVTTPIL AALGAL+++ AG NI +EG ML SA GV++S Sbjct: 1 MNSALSAIFSWEFVAAGTRVTTPILLAALGALVADLAGTPNIALEGTMLFSAFVGVVISG 60 Query: 61 YTHSAWXXXXXXXXXXXXXXXXXXFFTLKFKTHIILGGVAINMFASGGTVFILYLLSGDK 120 +T + W +F+LK KT II+ +A+N+FASGGT+F LYLL+GDK Sbjct: 61 FTQNLWLSVIGALLMGVIMSSILAYFSLKLKTDIIMAAIALNIFASGGTIFALYLLTGDK 120 Query: 121 GSSTSLASKVLPSVEIPLLKDIPVLGPILSGHHILTYLSILAVLVVYYLLNRTPLGLRIR 180 GSS SL S+VLP+++IP ++DIP +G ILSGHHILTY++I+ V V+ Y+L +TPLGLRIR Sbjct: 121 GSSASLKSQVLPNLDIPFIQDIPGIGRILSGHHILTYVAIILVFVIQYMLYKTPLGLRIR 180 Query: 181 SVGENPHAAQSVGVSVIKIQYTXXXXXXXXXXXXXXYMSMGYLSLFTRDMVAGRGWIAIA 240 SVGE+P AA+SVG+SV K Q+ ++SMGY+S F RDM AGRG+IA+A Sbjct: 181 SVGESPEAAKSVGISVFKTQFIALIISGLLASLGGIFLSMGYVSWFARDMTAGRGFIALA 240 Query: 241 AESMGRSTTVGTALTSLLFGAADALANALQVLKIPAELIATLPYVATVIGLIIYAVSE 298 A+++G ++ G AL SLLFG ++AL+ +LQ L IP E+ ++P++ TV L YA ++ Sbjct: 241 AQALGGTSAYGVALGSLLFGFSEALSFSLQFLNIPYEITQSMPFLITVGALAFYAWNK 298 >C2BFV8.1 C2BFV8_9FIRM ABC superfamily ATP binding cassette transporter, membrane protein Length = 308 Score = 273 bits (698), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 145/295 (49%), Positives = 202/295 (68%) Query: 3 SLLNVILTTDFAFSVLRVTTPILFAALGALISNRAGIINIGMEGIMLVSALTGVIVSAYT 62 +LLN IL T F +S +RVT PIL A+ A ++N+AG+ NIG+EGIML ++ VI SA+T Sbjct: 2 NLLNQILNTAFLYSAIRVTIPILLPAIAAYVTNKAGVPNIGLEGIMLTASFFAVIGSAFT 61 Query: 63 HSAWXXXXXXXXXXXXXXXXXXFFTLKFKTHIILGGVAINMFASGGTVFILYLLSGDKGS 122 S FFTLK KT +ILGG+A+N+F+S TVF+LYL++GDKG+ Sbjct: 62 SSIIMGVIIAVISGVVMASILAFFTLKLKTDVILGGIALNLFSSNLTVFLLYLITGDKGT 121 Query: 123 STSLASKVLPSVEIPLLKDIPVLGPILSGHHILTYLSILAVLVVYYLLNRTPLGLRIRSV 182 S SLASKV+P+V+IP++KDIP LG ++S + L Y SIL V++VY +LN+T LG I +V Sbjct: 122 SASLASKVVPNVQIPIIKDIPFLGEVISNQNALVYFSILLVIIVYIILNKTKLGRHIMAV 181 Query: 183 GENPHAAQSVGVSVIKIQYTXXXXXXXXXXXXXXYMSMGYLSLFTRDMVAGRGWIAIAAE 242 GEN AA+SVG+ V KI++ ++SMGY+S F+RDM AGRGWIA+AAE Sbjct: 182 GENEEAARSVGIKVNKIRFIAFIISGILCGIAGAFLSMGYVSWFSRDMTAGRGWIALAAE 241 Query: 243 SMGRSTTVGTALTSLLFGAADALANALQVLKIPAELIATLPYVATVIGLIIYAVS 297 +MG + VGT L+S+LFG + AL+N Q IP EL++ +P V TV+ L++Y++ Sbjct: 242 AMGMGSMVGTTLSSILFGVSSALSNIAQFFGIPTELVSIIPNVITVVALLLYSIK 296 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.139 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,367,264,811 Number of extensions: 47068870 Number of successful extensions: 208028 Number of sequences better than 1.0e-05: 1148 Number of HSP's gapped: 205361 Number of HSP's successfully gapped: 1148 Length of query: 311 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 176 Effective length of database: 1,788,859,178 Effective search space: 314839215328 Effective search space used: 314839215328 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)