BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0382.0007.p (318 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A0L0Y0.1 RIHA_SHESA Pyrimidine-specific ribonucleoside hydrolase... 302 2e-80 Q0HEZ4.1 RIHA_SHESM Pyrimidine-specific ribonucleoside hydrolase... 300 2e-79 Q0HZ05.1 RIHA_SHESR Pyrimidine-specific ribonucleoside hydrolase... 299 2e-79 Q8EIM7.1 RIHA_SHEON Pyrimidine-specific ribonucleoside hydrolase... 295 3e-78 A4YAA7.1 A4YAA7_SHEPC Purine nucleosidase EC=3.2.2.1 294 8e-78 >A0L0Y0.1 RIHA_SHESA Pyrimidine-specific ribonucleoside hydrolase rihA EC=3.2.-.- Length = 318 Score = 302 bits (774), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 154/308 (50%), Positives = 200/308 (64%), Gaps = 5/308 (1%) Query: 1 MPTPIIIDCDPGHDDXXXXXXXXXHPEQLEIRGITTVGGNQILDKITDNALKVLSFVN-A 59 M PII+DCDPGHDD HPE L +TT GNQ DK +NAL++L+ +N + Sbjct: 1 MSRPIILDCDPGHDDAIALILALAHPE-LTPLAVTTSAGNQTPDKTLNNALRILTLLNRS 59 Query: 60 DIXXXXXXXXXXXXXXXTGEQAHGESGMDGPALPASRFKPVEQGAVEFMLEIIRSSEEKI 119 DI + HGE+G+DGPALPA F+P AVE M E IR S++ + Sbjct: 60 DIPVAGGAVKPLSRELMIADNVHGETGLDGPALPAPSFQPQAVNAVELMAEKIRQSDKPV 119 Query: 120 TLVPTAPLTNIALLITAYPEVKEKIEKISLMGGGLAYGNVTTTAEFNIYVDPEAARIVFE 179 TLVPT PLTNIALL+ ++ E+ KIE+I LMGG GN T AEFNI+VDPEAA IVF+ Sbjct: 120 TLVPTGPLTNIALLLASHAELHAKIERIVLMGGAAGVGNWTPAAEFNIFVDPEAADIVFK 179 Query: 180 SGIPIVMSGLDVTDKAAIFEEEILELKS-RGPVSVMVGELLDFYSIYGK--KMGYVGSAL 236 SGIPI M GLDVT +A I +E+I +++ PV+ V ELLDF+ IY + K G+VG+ L Sbjct: 180 SGIPITMCGLDVTHQAQIMDEDIERIRAIANPVAKCVAELLDFFMIYHRDPKWGFVGAPL 239 Query: 237 HDPCAVAWLLRPELFESEHLHITVETEGRLTRGMTVADRRKKPDRPANTQVLLGVDREAF 296 HDPC +AWLL P LF+++ + +ET+ LT GMTV DR + +PAN VL G+DR+ F Sbjct: 240 HDPCTIAWLLNPALFDAQDCWVGIETQSELTLGMTVVDRYQLTGKPANATVLFGIDRQGF 299 Query: 297 MKLLFDAL 304 + LL D+L Sbjct: 300 VDLLVDSL 307 >Q0HEZ4.1 RIHA_SHESM Pyrimidine-specific ribonucleoside hydrolase rihA EC=3.2.-.- Length = 318 Score = 300 bits (767), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 153/308 (49%), Positives = 199/308 (64%), Gaps = 5/308 (1%) Query: 1 MPTPIIIDCDPGHDDXXXXXXXXXHPEQLEIRGITTVGGNQILDKITDNALKVLSFVN-A 59 M PII+DCDPGHDD HPE L +TT GNQ DK +NAL++L+ +N + Sbjct: 1 MSRPIILDCDPGHDDAIALILALAHPE-LNPLAVTTSAGNQTPDKTLNNALRILTLLNRS 59 Query: 60 DIXXXXXXXXXXXXXXXTGEQAHGESGMDGPALPASRFKPVEQGAVEFMLEIIRSSEEKI 119 DI + HGE+G+DGPALPA F+P AVE M E IR S++ + Sbjct: 60 DIPVAGGAVKPLSRELMIADNVHGETGLDGPALPAPSFQPQAVNAVELMAEKIRQSDKPV 119 Query: 120 TLVPTAPLTNIALLITAYPEVKEKIEKISLMGGGLAYGNVTTTAEFNIYVDPEAARIVFE 179 TLVPT PLTNIALL+ ++ E+ KIE+I LMGG GN T AEFNI+VDPEAA IVF+ Sbjct: 120 TLVPTGPLTNIALLLASHGELHAKIERIVLMGGAAGVGNWTPAAEFNIFVDPEAADIVFK 179 Query: 180 SGIPIVMSGLDVTDKAAIFEEEILELKS-RGPVSVMVGELLDFYSIYGK--KMGYVGSAL 236 SGIPI M GLDVT +A I +E+I +++ PV+ V ELLDF+ IY + K G+VG+ L Sbjct: 180 SGIPITMCGLDVTHQAQIMDEDIERIRAIPNPVAKCVAELLDFFMIYHRDPKWGFVGAPL 239 Query: 237 HDPCAVAWLLRPELFESEHLHITVETEGRLTRGMTVADRRKKPDRPANTQVLLGVDREAF 296 HDPC +AWLL P LF+++ + +ET+ LT GMTV DR + +P N VL G+DR+ F Sbjct: 240 HDPCTIAWLLNPALFDAQDCWVGIETQSELTLGMTVVDRYQLTGKPTNATVLFGIDRQGF 299 Query: 297 MKLLFDAL 304 + LL D+L Sbjct: 300 VDLLVDSL 307 >Q0HZ05.1 RIHA_SHESR Pyrimidine-specific ribonucleoside hydrolase rihA EC=3.2.-.- Length = 318 Score = 299 bits (766), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 153/308 (49%), Positives = 198/308 (64%), Gaps = 5/308 (1%) Query: 1 MPTPIIIDCDPGHDDXXXXXXXXXHPEQLEIRGITTVGGNQILDKITDNALKVLSFVN-A 59 M PII+DCDPGHDD HPE L +TT GNQ DK NAL++L+ +N + Sbjct: 1 MSRPIILDCDPGHDDAIALILALAHPE-LNPLAVTTSAGNQTPDKTLKNALRILTLLNRS 59 Query: 60 DIXXXXXXXXXXXXXXXTGEQAHGESGMDGPALPASRFKPVEQGAVEFMLEIIRSSEEKI 119 DI + HGE+G+DGPALPA F+P AVE M E IR S++ + Sbjct: 60 DIPVAGGAVKPLSRELMIADNVHGETGLDGPALPAPSFQPQAVNAVELMAEKIRQSDKPV 119 Query: 120 TLVPTAPLTNIALLITAYPEVKEKIEKISLMGGGLAYGNVTTTAEFNIYVDPEAARIVFE 179 TLVPT PLTNIALL+ ++ E+ KIE+I LMGG GN T AEFNI+VDPEAA IVF+ Sbjct: 120 TLVPTGPLTNIALLLASHGELHAKIERIVLMGGAAGVGNWTPAAEFNIFVDPEAADIVFK 179 Query: 180 SGIPIVMSGLDVTDKAAIFEEEILELKS-RGPVSVMVGELLDFYSIYGK--KMGYVGSAL 236 SGIPI M GLDVT +A I +E+I +++ PV+ V ELLDF+ IY + K G+VG+ L Sbjct: 180 SGIPITMCGLDVTHQAQIMDEDIERIRAIPNPVAKCVAELLDFFMIYHRAPKWGFVGAPL 239 Query: 237 HDPCAVAWLLRPELFESEHLHITVETEGRLTRGMTVADRRKKPDRPANTQVLLGVDREAF 296 HDPC +AWLL P LF+++ + +ET+ LT GMTV DR + +P N VL G+DR+ F Sbjct: 240 HDPCTIAWLLNPALFDAQDCWVGIETQSELTLGMTVVDRYQLTGKPTNATVLFGIDRQGF 299 Query: 297 MKLLFDAL 304 + LL D+L Sbjct: 300 VDLLVDSL 307 >Q8EIM7.1 RIHA_SHEON Pyrimidine-specific ribonucleoside hydrolase rihA EC=3.2.-.- Length = 318 Score = 295 bits (756), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 148/308 (48%), Positives = 200/308 (64%), Gaps = 5/308 (1%) Query: 1 MPTPIIIDCDPGHDDXXXXXXXXXHPEQLEIRGITTVGGNQILDKITDNALKVLSFVN-A 59 M PII+DCDPGHDD HP+ + + +TT GNQ DK +NAL++L+ +N + Sbjct: 1 MTCPIILDCDPGHDDAIALILALAHPDLVPL-AVTTSAGNQTPDKTLNNALRILTLLNRS 59 Query: 60 DIXXXXXXXXXXXXXXXTGEQAHGESGMDGPALPASRFKPVEQGAVEFMLEIIRSSEEKI 119 DI + HGE+G+DGPALP F P AVE M + IR S + + Sbjct: 60 DIPVAGGAAKPLARDLIIADNVHGETGLDGPALPNPSFSPQAITAVELMAQQIRKSHQPV 119 Query: 120 TLVPTAPLTNIALLITAYPEVKEKIEKISLMGGGLAYGNVTTTAEFNIYVDPEAARIVFE 179 TL+PT PLTNIALL+ ++ E+ +KIE+I LMGG GN T AEFNI+VDPEAA IVF+ Sbjct: 120 TLIPTGPLTNIALLLASHSELHDKIERIVLMGGAAGVGNWTPAAEFNIFVDPEAADIVFK 179 Query: 180 SGIPIVMSGLDVTDKAAIFEEEILELKS-RGPVSVMVGELLDFYSIYGK--KMGYVGSAL 236 SGIPI M GLDVT +A I +E+I +++ PV+ V ELLDF+ IY + K G+VG+ L Sbjct: 180 SGIPITMCGLDVTHQAQIMDEDIERIRAIPNPVAKCVAELLDFFMIYHRDPKWGFVGAPL 239 Query: 237 HDPCAVAWLLRPELFESEHLHITVETEGRLTRGMTVADRRKKPDRPANTQVLLGVDREAF 296 HDPC +AWLL+PELF+++ + +ET+ LT GMTV DR + +PAN VL G++R+ F Sbjct: 240 HDPCTIAWLLKPELFDAQDCWVGIETQSELTLGMTVVDRYQLTGKPANATVLFGLNRQGF 299 Query: 297 MKLLFDAL 304 + LL +L Sbjct: 300 VDLLVHSL 307 >A4YAA7.1 A4YAA7_SHEPC Purine nucleosidase EC=3.2.2.1 Length = 318 Score = 294 bits (752), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 147/312 (47%), Positives = 201/312 (64%), Gaps = 5/312 (1%) Query: 1 MPTPIIIDCDPGHDDXXXXXXXXXHPEQLEIRGITTVGGNQILDKITDNALKVLSFVN-A 59 M PII+DCDPGHDD HPE + + +TT GNQ DK +NAL++L+ +N + Sbjct: 1 MTRPIILDCDPGHDDAIALILALAHPELVPL-AVTTSAGNQTPDKTLNNALRILTLLNRS 59 Query: 60 DIXXXXXXXXXXXXXXXTGEQAHGESGMDGPALPASRFKPVEQGAVEFMLEIIRSSEEKI 119 DI + HGE+G+DGP LP F P AVE M + IR S + + Sbjct: 60 DIPVAGGAIKPLARELIIADNVHGETGLDGPVLPNPSFSPQPITAVELMAQQIRHSTKPV 119 Query: 120 TLVPTAPLTNIALLITAYPEVKEKIEKISLMGGGLAYGNVTTTAEFNIYVDPEAARIVFE 179 TL+PT PLTNIALL+ ++ E+ KIE+I LMGG GN T AEFNI+VDPEAA IVF+ Sbjct: 120 TLIPTGPLTNIALLLASHSELHHKIERIVLMGGAAGVGNWTPAAEFNIFVDPEAADIVFK 179 Query: 180 SGIPIVMSGLDVTDKAAIFEEEILELKS-RGPVSVMVGELLDFYSIYGK--KMGYVGSAL 236 SGIPI M GLDVT +A I +E+I +++ + P++ V ELLDF+ IY + K G++G+ L Sbjct: 180 SGIPITMCGLDVTHQAQIMDEDIERIRAIQNPIAQCVAELLDFFMIYHRDPKWGFIGAPL 239 Query: 237 HDPCAVAWLLRPELFESEHLHITVETEGRLTRGMTVADRRKKPDRPANTQVLLGVDREAF 296 HDPC +AWLL+PELFE++ +++ET+ LT GMTV DR + + AN VL G+DR+ F Sbjct: 240 HDPCTIAWLLKPELFEAQDCWVSIETQSELTLGMTVVDRYQLTGKAANATVLFGLDRQGF 299 Query: 297 MKLLFDALDRLD 308 + LL +++ D Sbjct: 300 VDLLVESVSVYD 311 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.138 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,763,117,772 Number of extensions: 68284146 Number of successful extensions: 158838 Number of sequences better than 1.0e-05: 1649 Number of HSP's gapped: 155121 Number of HSP's successfully gapped: 1655 Length of query: 318 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 183 Effective length of database: 1,788,859,178 Effective search space: 327361229574 Effective search space used: 327361229574 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)