BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0382.0005.p (332 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K9P6.1 B3K9P6_9BACI ABC transporter related 261 8e-68 C2W9E9.1 C2W9E9_BACCE Methionine import ATP-binding protein metN 2 249 3e-64 C3BM15.1 C3BM15_9BACI Methionine import ATP-binding protein metN 1 249 3e-64 C3B514.1 C3B514_BACMY Methionine import ATP-binding protein metN 1 249 3e-64 C3AMT0.1 C3AMT0_BACMY Methionine import ATP-binding protein metN 1 249 3e-64 >B3K9P6.1 B3K9P6_9BACI ABC transporter related Length = 253 Score = 261 bits (666), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 134/235 (57%), Positives = 166/235 (70%) Query: 80 ILALSGVSKSFDLKEGRYCAVDKVSLEVRXXXXXXXXXXXXXXKSTLLRLINLLERPDAG 139 +++L VSKS+ RY A+D VSL++ KSTLLR++N+LERPDAG Sbjct: 1 MISLQEVSKSYGNGADRYLAIDAVSLDIEEGSIHGIIGASGAGKSTLLRIMNVLERPDAG 60 Query: 140 TVTLDGRLLTEMPEKLLRRERQKIGMIFQQFNLVGNATVSRNVAIPLELAGAPRSGRMER 199 V+++GR LT + + LR R+ IGMIFQ F LV N TV NV++PLELA P++ R ER Sbjct: 61 KVSVNGRELTALGGRELREARRSIGMIFQLFQLVSNRTVWGNVSLPLELAKVPKAARAER 120 Query: 200 VRECLHFVGLESKADQYPAQLSGGQRQRVAIARALANSPKLLLCDEPTSALDPGTTADIL 259 V+E L FVGLE KA YPAQLSGGQ+QRVAIARALANSP +LLCDEPTS+LDP TTADIL Sbjct: 121 VQEVLRFVGLEDKAKSYPAQLSGGQKQRVAIARALANSPTVLLCDEPTSSLDPRTTADIL 180 Query: 260 DVLQHIKDMLGVTVVIVTHELDVVRKICTDVSVMEGGRIVDSFSRRDGGFLAPEG 314 DVL+HI LGVT+VIV+HE+DVV IC +SVME GR+ ++ R P G Sbjct: 181 DVLRHINRTLGVTIVIVSHEMDVVNGICDHLSVMEDGRLTRTYRNRQQDGEVPRG 235 >C2W9E9.1 C2W9E9_BACCE Methionine import ATP-binding protein metN 2 Length = 255 Score = 249 bits (636), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 123/229 (53%), Positives = 158/229 (68%) Query: 78 FHILALSGVSKSFDLKEGRYCAVDKVSLEVRXXXXXXXXXXXXXXKSTLLRLINLLERPD 137 ++ L G++K+F KEG + V SL++ KSTLLR +NLLE+PD Sbjct: 1 MQMITLRGINKTFQTKEGLFHGVKSASLQIEEHDIFGIAGLSGAGKSTLLRTMNLLEKPD 60 Query: 138 AGTVTLDGRLLTEMPEKLLRRERQKIGMIFQQFNLVGNATVSRNVAIPLELAGAPRSGRM 197 +G V ++G LT + +K LR RQ IGMIFQ F+L+ N VS N+A+PLEL P+ R Sbjct: 61 SGEVIVNGEDLTNLSKKDLRTARQSIGMIFQHFHLLHNKNVSDNIALPLELKSVPKEERE 120 Query: 198 ERVRECLHFVGLESKADQYPAQLSGGQRQRVAIARALANSPKLLLCDEPTSALDPGTTAD 257 +RVRECL VGL KA +P+QLSGGQ+QRVAIARALAN PK+LLCDEPTSALDP TT Sbjct: 121 KRVRECLEIVGLSDKAHHFPSQLSGGQKQRVAIARALANDPKVLLCDEPTSALDPKTTFS 180 Query: 258 ILDVLQHIKDMLGVTVVIVTHELDVVRKICTDVSVMEGGRIVDSFSRRD 306 IL LQ I LGVT+VIVTHE++V+++IC V+VME G +V+SF+ D Sbjct: 181 ILQFLQKINRELGVTIVIVTHEMNVIKQICNKVAVMEDGEVVESFNLHD 229 >C3BM15.1 C3BM15_9BACI Methionine import ATP-binding protein metN 1 Length = 255 Score = 249 bits (636), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 129/253 (50%), Positives = 167/253 (66%), Gaps = 1/253 (0%) Query: 80 ILALSGVSKSFDLKEGRYCAVDKVSLEVRXXXXXXXXXXXXXXKSTLLRLINLLERPDAG 139 ++ L ++K+F KEG + V VSL++ KSTLLR +NLLE+PD+G Sbjct: 3 MITLRDINKTFQTKEGLFHGVKSVSLQIEEHDIYGIAGLSGAGKSTLLRTMNLLEKPDSG 62 Query: 140 TVTLDGRLLTEMPEKLLRRERQKIGMIFQQFNLVGNATVSRNVAIPLELAGAPRSGRMER 199 V ++G+ LT++ +K LR RQ IGMIFQ F+L+ N VS N+A+PLEL + R +R Sbjct: 63 AVIVNGKDLTKLSKKDLRTARQSIGMIFQHFHLLHNKNVSDNIALPLELKSVSKEEREKR 122 Query: 200 VRECLHFVGLESKADQYPAQLSGGQRQRVAIARALANSPKLLLCDEPTSALDPGTTADIL 259 VRECL VGL KA +P+QLSGGQ+QRVAIARALAN PK+LLCDEPTSALDP TT IL Sbjct: 123 VRECLEIVGLSDKAHHFPSQLSGGQKQRVAIARALANDPKVLLCDEPTSALDPKTTRSIL 182 Query: 260 DVLQHIKDMLGVTVVIVTHELDVVRKICTDVSVMEGGRIVDSFSRRDGGFLAPEGHAGSY 319 LQ I LGVT+VIVTHE++V+++IC V+VME G +V+SF RD L P Sbjct: 183 QFLQKINKELGVTIVIVTHEMNVIKQICNKVAVMEEGEVVESFHLRD-QHLKPTTEIAKL 241 Query: 320 RERITGKAGEAHV 332 + + G AHV Sbjct: 242 LLGVEQERGIAHV 254 >C3B514.1 C3B514_BACMY Methionine import ATP-binding protein metN 1 Length = 255 Score = 249 bits (635), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 129/253 (50%), Positives = 167/253 (66%), Gaps = 1/253 (0%) Query: 80 ILALSGVSKSFDLKEGRYCAVDKVSLEVRXXXXXXXXXXXXXXKSTLLRLINLLERPDAG 139 ++ L ++K+F KEG + V VSL++ KSTLLR +NLLE+PD+G Sbjct: 3 MITLCDINKTFQTKEGLFHGVKSVSLQIEEHDIYGIAGLSGAGKSTLLRTMNLLEKPDSG 62 Query: 140 TVTLDGRLLTEMPEKLLRRERQKIGMIFQQFNLVGNATVSRNVAIPLELAGAPRSGRMER 199 V ++G+ LT++ +K LR RQ IGMIFQ F+L+ N VS N+A+PLEL + R +R Sbjct: 63 AVIVNGKDLTKLSKKDLRTARQSIGMIFQHFHLLHNKNVSDNIALPLELKSVSKEEREKR 122 Query: 200 VRECLHFVGLESKADQYPAQLSGGQRQRVAIARALANSPKLLLCDEPTSALDPGTTADIL 259 VRECL VGL KA +P+QLSGGQ+QRVAIARALAN PK+LLCDEPTSALDP TT IL Sbjct: 123 VRECLEIVGLSDKAHHFPSQLSGGQKQRVAIARALANDPKVLLCDEPTSALDPKTTRSIL 182 Query: 260 DVLQHIKDMLGVTVVIVTHELDVVRKICTDVSVMEGGRIVDSFSRRDGGFLAPEGHAGSY 319 LQ I LGVT+VIVTHE++V+++IC V+VME G +V+SF RD L P Sbjct: 183 QFLQKINKELGVTIVIVTHEMNVIKQICNKVAVMEEGEVVESFHLRD-QHLKPTTEIAKL 241 Query: 320 RERITGKAGEAHV 332 + + G AHV Sbjct: 242 LLGVEQERGIAHV 254 >C3AMT0.1 C3AMT0_BACMY Methionine import ATP-binding protein metN 1 Length = 255 Score = 249 bits (635), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 129/253 (50%), Positives = 167/253 (66%), Gaps = 1/253 (0%) Query: 80 ILALSGVSKSFDLKEGRYCAVDKVSLEVRXXXXXXXXXXXXXXKSTLLRLINLLERPDAG 139 ++ L ++K+F KEG + V VSL++ KSTLLR +NLLE+PD+G Sbjct: 3 MITLCDINKTFQTKEGLFHGVKSVSLQIEEHDIYGIAGLSGAGKSTLLRTMNLLEKPDSG 62 Query: 140 TVTLDGRLLTEMPEKLLRRERQKIGMIFQQFNLVGNATVSRNVAIPLELAGAPRSGRMER 199 V ++G+ LT++ +K LR RQ IGMIFQ F+L+ N VS N+A+PLEL + R +R Sbjct: 63 AVIVNGKDLTKLSKKDLRTARQSIGMIFQHFHLLHNKNVSDNIALPLELKSVSKEEREKR 122 Query: 200 VRECLHFVGLESKADQYPAQLSGGQRQRVAIARALANSPKLLLCDEPTSALDPGTTADIL 259 VRECL VGL KA +P+QLSGGQ+QRVAIARALAN PK+LLCDEPTSALDP TT IL Sbjct: 123 VRECLEIVGLSDKAHHFPSQLSGGQKQRVAIARALANDPKVLLCDEPTSALDPKTTRSIL 182 Query: 260 DVLQHIKDMLGVTVVIVTHELDVVRKICTDVSVMEGGRIVDSFSRRDGGFLAPEGHAGSY 319 LQ I LGVT+VIVTHE++V+++IC V+VME G +V+SF RD L P Sbjct: 183 QFLQKINKELGVTIVIVTHEMNVIKQICNKVAVMEEGEVVESFHLRD-QHLKPTTEIAKL 241 Query: 320 RERITGKAGEAHV 332 + + G AHV Sbjct: 242 LLGVEQERGIAHV 254 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.138 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,738,298,275 Number of extensions: 64893014 Number of successful extensions: 374767 Number of sequences better than 1.0e-05: 87586 Number of HSP's gapped: 293474 Number of HSP's successfully gapped: 93850 Length of query: 332 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 196 Effective length of database: 1,779,438,163 Effective search space: 348769879948 Effective search space used: 348769879948 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)