BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0382.0004.p (220 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C4L065.1 C4L065_EXISA Binding-protein-dependent transport system... 231 4e-59 A6CTE0.1 A6CTE0_9BACI Probable transmembrane ABC transporter pro... 216 2e-54 B3K9P7.1 B3K9P7_9BACI Binding-protein-dependent transport system... 215 2e-54 B1YEF4.1 B1YEF4_EXIS2 Binding-protein-dependent transport system... 213 9e-54 A9C3B5.1 A9C3B5_DELAS Binding-protein-dependent transport system... 170 1e-40 >C4L065.1 C4L065_EXISA Binding-protein-dependent transport systems inner membrane component Length = 220 Score = 231 bits (588), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 117/220 (53%), Positives = 144/220 (65%) Query: 1 MFENLLKYQDQMWQSIGETFVMVGISXXXXXXXXXXXXXXXYFCRKGQLYENKTXXXXXX 60 M + L++YQ ++WQSI ETF+MVG+S Y RKGQL EN+ Sbjct: 1 MPDILVRYQSEIWQSIAETFMMVGVSILAAILVGLPLGTWLYLSRKGQLLENQIVFSVLN 60 Query: 61 XXXXXXRSFPFLLLVVALIPFTRILVGTAIGTMAAAVPLSIVAIAYYSRLVEQSLLEVPK 120 RSFPFLLLVV LIPFTR+++GTAIGT AA VPLSI+AIA+Y+RLVEQSL++VP+ Sbjct: 61 LVVNIVRSFPFLLLVVFLIPFTRLIIGTAIGTAAATVPLSIIAIAHYARLVEQSLIDVPR 120 Query: 121 GTIEAALSMGASKAGLIFKFLYVEARSGLVLGLTAXXXXXXXXXXVMXXXXXXXXXDFAI 180 G IEAALSMGAS +IFKFLYVEARSGLVLGLT +M DFAI Sbjct: 121 GVIEAALSMGASVKDIIFKFLYVEARSGLVLGLTTSIISFISYSTIMGVVGGGGIGDFAI 180 Query: 181 RYGYQRFETEVMVYAXXXXXXXXXXXXFAGSTLARLLDKR 220 RYGYQ+F+TE+M+Y F G+T+AR++DKR Sbjct: 181 RYGYQQFQTELMLYMILIMLVFVQLIQFTGTTVARIIDKR 220 >A6CTE0.1 A6CTE0_9BACI Probable transmembrane ABC transporter protein Length = 220 Score = 216 bits (549), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 112/220 (50%), Positives = 143/220 (65%) Query: 1 MFENLLKYQDQMWQSIGETFVMVGISXXXXXXXXXXXXXXXYFCRKGQLYENKTXXXXXX 60 M + L++Y+ ++W+SIGETFVMVG+S + CRKG L EN+ Sbjct: 1 MLDVLVQYEAEIWRSIGETFVMVGVSIIAAVLVGLPVGTLLFLCRKGNLLENQLVFSILN 60 Query: 61 XXXXXXRSFPFLLLVVALIPFTRILVGTAIGTMAAAVPLSIVAIAYYSRLVEQSLLEVPK 120 RSFPFLLLVV LIPFTR ++GTAIGT AA VPL+I+AIA+YSRLVEQSL++VP+ Sbjct: 61 LLVNVVRSFPFLLLVVFLIPFTRFVIGTAIGTAAATVPLAIIAIAHYSRLVEQSLIDVPR 120 Query: 121 GTIEAALSMGASKAGLIFKFLYVEARSGLVLGLTAXXXXXXXXXXVMXXXXXXXXXDFAI 180 G +EAA+SMGAS +IFKF+YVEARSGLVLGLT +M DFAI Sbjct: 121 GVMEAAVSMGASVREVIFKFIYVEARSGLVLGLTTSIISFISYSTIMGVVGGGGIGDFAI 180 Query: 181 RYGYQRFETEVMVYAXXXXXXXXXXXXFAGSTLARLLDKR 220 RYGYQ+F+T++M+Y F G+T AR++DKR Sbjct: 181 RYGYQQFKTDLMIYMIIIMIILVQLIQFIGTTAARVIDKR 220 >B3K9P7.1 B3K9P7_9BACI Binding-protein-dependent transport systems inner membrane component Length = 232 Score = 215 bits (547), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 116/216 (53%), Positives = 138/216 (63%) Query: 5 LLKYQDQMWQSIGETFVMVGISXXXXXXXXXXXXXXXYFCRKGQLYENKTXXXXXXXXXX 64 +L+YQ ++W++IGETF+MVGIS + CRKGQ YEN+ Sbjct: 15 VLQYQHEIWRAIGETFIMVGISIAAAIILGLPVGTLLFLCRKGQQYENRLLFSILNALVN 74 Query: 65 XXRSFPFLLLVVALIPFTRILVGTAIGTMAAAVPLSIVAIAYYSRLVEQSLLEVPKGTIE 124 RSFPFLLLVVA+IP TR +VGT++GT+AAAVPLS+VA+AYYSRLVEQSLLEVPK +E Sbjct: 75 VIRSFPFLLLVVAMIPVTRWIVGTSLGTVAAAVPLSVVAVAYYSRLVEQSLLEVPKEVME 134 Query: 125 AALSMGASKAGLIFKFLYVEARSGLVLGLTAXXXXXXXXXXVMXXXXXXXXXDFAIRYGY 184 AA SMGAS +IFKFLYVEARSGL LGLT VM DFAIRYGY Sbjct: 135 AASSMGASTIQMIFKFLYVEARSGLALGLTTSTISFISYSTVMGIVGGGGVGDFAIRYGY 194 Query: 185 QRFETEVMVYAXXXXXXXXXXXXFAGSTLARLLDKR 220 QRFE E+M + F G+ +RLLDKR Sbjct: 195 QRFEEEIMTFTIIIMIILVQSIQFGGNLASRLLDKR 230 >B1YEF4.1 B1YEF4_EXIS2 Binding-protein-dependent transport systems inner membrane component Length = 220 Score = 213 bits (542), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 113/220 (51%), Positives = 139/220 (63%) Query: 1 MFENLLKYQDQMWQSIGETFVMVGISXXXXXXXXXXXXXXXYFCRKGQLYENKTXXXXXX 60 M + +L+Y ++ +IG+TFVMVGIS Y RKGQL N+ Sbjct: 1 MPDIVLEYAAEIRLAIGQTFVMVGISILAALLLGLPLGTWLYLSRKGQLLSNQFVFSILN 60 Query: 61 XXXXXXRSFPFLLLVVALIPFTRILVGTAIGTMAAAVPLSIVAIAYYSRLVEQSLLEVPK 120 RSFPFLLLVV LIPFTR+++GTAIGT AA VPL+++AIA+YSRLVEQSLLEVPK Sbjct: 61 LFVNTIRSFPFLLLVVFLIPFTRLIIGTAIGTAAATVPLAVIAIAHYSRLVEQSLLEVPK 120 Query: 121 GTIEAALSMGASKAGLIFKFLYVEARSGLVLGLTAXXXXXXXXXXVMXXXXXXXXXDFAI 180 G IEAA+SMGAS ++ KFL+VEARSGLVLGLT +M DFA+ Sbjct: 121 GVIEAAVSMGASTREVVLKFLFVEARSGLVLGLTTSIVSFISYSTIMGVVGGGGIGDFAV 180 Query: 181 RYGYQRFETEVMVYAXXXXXXXXXXXXFAGSTLARLLDKR 220 RYGYQ+F+TE+M+Y F G+T ARLLDKR Sbjct: 181 RYGYQQFQTELMLYMILIMVILVQLIQFTGTTAARLLDKR 220 >A9C3B5.1 A9C3B5_DELAS Binding-protein-dependent transport systems inner membrane component Length = 221 Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 90/220 (40%), Positives = 124/220 (56%) Query: 1 MFENLLKYQDQMWQSIGETFVMVGISXXXXXXXXXXXXXXXYFCRKGQLYENKTXXXXXX 60 M EN+++ ++W ++G+T +M+GI + GQ +N+ Sbjct: 1 MSENIVEILPELWLAMGQTLLMLGIGLSAAVLIGGPLGVLLFLLGPGQSLDNRPAFAVLN 60 Query: 61 XXXXXXRSFPFLLLVVALIPFTRILVGTAIGTMAAAVPLSIVAIAYYSRLVEQSLLEVPK 120 RSFPF++L+VAL+PFTR L GT+IG +AAAVPLS+ AI Y +RLV+Q L +VP+ Sbjct: 61 WTVNTVRSFPFIILLVALVPFTRWLAGTSIGPLAAAVPLSVAAIPYLARLVDQCLRDVPR 120 Query: 121 GTIEAALSMGASKAGLIFKFLYVEARSGLVLGLTAXXXXXXXXXXVMXXXXXXXXXDFAI 180 G IEAA +MGAS+ ++++ L VEARSGLVL LT + D AI Sbjct: 121 GVIEAAHAMGASELQIVWRVLIVEARSGLVLALTVLAVSFLSYSAIAGVVGGGGIGDLAI 180 Query: 181 RYGYQRFETEVMVYAXXXXXXXXXXXXFAGSTLARLLDKR 220 RYGY RF+T+VMV F G+T AR LDKR Sbjct: 181 RYGYYRFQTDVMVLTVTILVAMVQVIQFVGNTAARRLDKR 220 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.140 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 789,942,178 Number of extensions: 20563873 Number of successful extensions: 86426 Number of sequences better than 1.0e-05: 1362 Number of HSP's gapped: 85272 Number of HSP's successfully gapped: 1362 Length of query: 220 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 90 Effective length of database: 1,835,964,253 Effective search space: 165236782770 Effective search space used: 165236782770 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 128 (53.9 bits)