BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0382.0003.p (281 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DDB3.1 B1DDB3_9BACL NLPA lipoprotein 340 1e-91 B3K9P8.1 B3K9P8_9BACI NLPA lipoprotein 327 6e-88 B1YEF5.1 B1YEF5_EXIS2 NLPA lipoprotein 286 1e-75 C4L066.1 C4L066_EXISA NLPA lipoprotein 274 6e-72 A6CTE1.1 A6CTE1_9BACI Membrane protein 272 2e-71 >B1DDB3.1 B1DDB3_9BACL NLPA lipoprotein Length = 281 Score = 340 bits (871), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 167/265 (63%), Positives = 198/265 (74%) Query: 17 IAAGCGNNKKXXXXXXXXXXXXXXXXXVKIKVASLIPPMTDILDIVKPLLKEDGVDMEVV 76 I AGCG N K V ++VA LIPPM++IL++VKPLLK+DG++ME+V Sbjct: 17 IVAGCGQNNKPDKQDNQATNEGKAGQEVNLEVAVLIPPMSEILELVKPLLKQDGINMEIV 76 Query: 77 ILSDNVQPNEALANKEVDANFFQHVPYMEQFNASKGSKLVEVQPVYDAIYGGYSKRYKSI 136 LSDNVQPN AL +KEVDANFFQHVPYM FNA+ + LV V+ +Y+A+YGGYSK+YK I Sbjct: 77 TLSDNVQPNTALQHKEVDANFFQHVPYMNDFNATNKANLVPVKAIYNAVYGGYSKKYKKI 136 Query: 137 ADLPEGATLVMANDPSNTGRSLQMFAKAGLIKLKEGVGIQATQADITENAKKFKFQEXXX 196 DLP+GAT+ +ANDPSN GRSL M GL+KLKEGVGI+ATQADI +N KFKF+E Sbjct: 137 EDLPDGATIAIANDPSNIGRSLVMMENNGLLKLKEGVGIKATQADIVDNPHKFKFKEVDL 196 Query: 197 XXXXXXXXXXXXXXXTPAYASPLGLTPKKDALITEGSDSEFTITLVAREDNKDSDAIQKL 256 TPAYA PLGLTPKKDALI EGSDS+F ITLVAREDN +S AIQKL Sbjct: 197 LMLARVIDDVDMVLMTPAYAKPLGLTPKKDALIKEGSDSDFVITLVAREDNVNSPAIQKL 256 Query: 257 AKRISGPEVKKFLEDNYADIALPAF 281 A+R++GPEVKKFLEDNY+DIALPAF Sbjct: 257 AERMTGPEVKKFLEDNYSDIALPAF 281 >B3K9P8.1 B3K9P8_9BACI NLPA lipoprotein Length = 278 Score = 327 bits (839), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 157/263 (59%), Positives = 201/263 (76%), Gaps = 2/263 (0%) Query: 19 AGCGNNKKXXXXXXXXXXXXXXXXXVKIKVASLIPPMTDILDIVKPLLKEDGVDMEVVIL 78 AGCG ++ V +KVA+LIPPMT++L++VKP+LKE+G+++++ IL Sbjct: 17 AGCG--QQPAKDEAPESAAPEGKEEVTLKVATLIPPMTEVLELVKPMLKEEGINLDIRIL 74 Query: 79 SDNVQPNEALANKEVDANFFQHVPYMEQFNASKGSKLVEVQPVYDAIYGGYSKRYKSIAD 138 SDNVQPN ALA+ EVDANFFQHVPYME++NA+ GS+LV V P+Y+A++G YSK+YK+I + Sbjct: 75 SDNVQPNNALAHNEVDANFFQHVPYMEEYNANNGSELVPVTPIYNAVFGAYSKKYKTIEE 134 Query: 139 LPEGATLVMANDPSNTGRSLQMFAKAGLIKLKEGVGIQATQADITENAKKFKFQEXXXXX 198 LP+GAT+ + NDPSN GRSL MF K GLI+LKEGVGIQATQADI EN ++KF E Sbjct: 135 LPDGATIAIPNDPSNIGRSLVMFEKNGLIELKEGVGIQATQADIVENPHQYKFTEVDLLM 194 Query: 199 XXXXXXXXXXXXXTPAYASPLGLTPKKDALITEGSDSEFTITLVAREDNKDSDAIQKLAK 258 TPAYA PLGLTPKKDAL+TEG+DS+FTITLVAR+DN DS+ IQKLA+ Sbjct: 195 LARTLDDVDMVAMTPAYAKPLGLTPKKDALVTEGNDSDFTITLVARKDNVDSEPIQKLAQ 254 Query: 259 RISGPEVKKFLEDNYADIALPAF 281 ++ PEVKKF E+NY++IALPAF Sbjct: 255 AMTSPEVKKFFEENYSEIALPAF 277 >B1YEF5.1 B1YEF5_EXIS2 NLPA lipoprotein Length = 272 Score = 286 bits (733), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 147/263 (55%), Positives = 184/263 (69%), Gaps = 7/263 (2%) Query: 19 AGCGNNKKXXXXXXXXXXXXXXXXXVKIKVASLIPPMTDILDIVKPLLKEDGVDMEVVIL 78 AGCGN +K +KVASLI PMT+ILD+VKP LK++G+++EVV+L Sbjct: 16 AGCGNAEKKDEQESASKTET-------LKVASLIKPMTEILDLVKPELKKEGINLEVVVL 68 Query: 79 SDNVQPNEALANKEVDANFFQHVPYMEQFNASKGSKLVEVQPVYDAIYGGYSKRYKSIAD 138 SDNVQPN ALA KEVDANFFQHVPYME+FN + + LV ++P+Y A YG YSK YK + Sbjct: 69 SDNVQPNSALAAKEVDANFFQHVPYMEEFNRNNKANLVPIKPIYFANYGLYSKDYKKMDQ 128 Query: 139 LPEGATLVMANDPSNTGRSLQMFAKAGLIKLKEGVGIQATQADITENAKKFKFQEXXXXX 198 LP+GA + +AND SN RSL + A+ IKLK+ G T DITEN + FKF+E Sbjct: 129 LPKGAVIAVANDVSNIDRSLALLAQHDAIKLKKKTGPYYTMKDITENKRDFKFKEVDLLM 188 Query: 199 XXXXXXXXXXXXXTPAYASPLGLTPKKDALITEGSDSEFTITLVAREDNKDSDAIQKLAK 258 TPAYASPLGLTPKKDAL+TEG +++F ITLVAR+DN+DS+AIQKLAK Sbjct: 189 LARLYDDADAVIMTPAYASPLGLTPKKDALVTEGVENDFAITLVARKDNQDSEAIQKLAK 248 Query: 259 RISGPEVKKFLEDNYADIALPAF 281 ++ P+VKKFLEDNY + A+PAF Sbjct: 249 AMTSPKVKKFLEDNYDETAIPAF 271 >C4L066.1 C4L066_EXISA NLPA lipoprotein Length = 270 Score = 274 bits (701), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 137/265 (51%), Positives = 178/265 (67%), Gaps = 8/265 (3%) Query: 17 IAAGCGNNKKXXXXXXXXXXXXXXXXXVKIKVASLIPPMTDILDIVKPLLKEDGVDMEVV 76 + A CGN+ + +KVASLIPPMTD+L+I K L ED +++E+V Sbjct: 14 VLAACGNDTETQTKQANEPQ--------TLKVASLIPPMTDMLEIAKEQLAEDNIELEIV 65 Query: 77 ILSDNVQPNEALANKEVDANFFQHVPYMEQFNASKGSKLVEVQPVYDAIYGGYSKRYKSI 136 +L DNVQPN ALA KEVDANFFQHVPYME+FN S + LV ++P+Y A YG Y+K Y ++ Sbjct: 66 VLGDNVQPNSALAAKEVDANFFQHVPYMEEFNRSNDANLVPIEPIYFANYGVYAKNYDNM 125 Query: 137 ADLPEGATLVMANDPSNTGRSLQMFAKAGLIKLKEGVGIQATQADITENAKKFKFQEXXX 196 DLPEGAT+ +AND SN RSL + A+ +I+L E G TQADIT N K FKF+E Sbjct: 126 EDLPEGATIAIANDVSNIDRSLSLLAQHDVIELGEKEGTYYTQADITSNPKNFKFEEVDL 185 Query: 197 XXXXXXXXXXXXXXXTPAYASPLGLTPKKDALITEGSDSEFTITLVAREDNKDSDAIQKL 256 TPAYA+PLGLTPK DAL+TEG +++F ITLVAREDN+D +AIQKL Sbjct: 186 LMLARAYDDVDAVLMTPAYAAPLGLTPKSDALLTEGVENDFAITLVAREDNQDDEAIQKL 245 Query: 257 AKRISGPEVKKFLEDNYADIALPAF 281 + ++ EV+ FL++NY + A+PAF Sbjct: 246 GEALTSDEVRAFLQENYDETAIPAF 270 >A6CTE1.1 A6CTE1_9BACI Membrane protein Length = 277 Score = 272 bits (696), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 136/262 (51%), Positives = 178/262 (67%), Gaps = 2/262 (0%) Query: 20 GCGNNKKXXXXXXXXXXXXXXXXXVKIKVASLIPPMTDILDIVKPLLKEDGVDMEVVILS 79 GCG N + V +KVASLIPPMT+IL++VKP L E+ +++E+V+L Sbjct: 17 GCGQNNEQAQQEEPAKDQEQEE--VTLKVASLIPPMTEILELVKPKLAEENINLEMVVLG 74 Query: 80 DNVQPNEALANKEVDANFFQHVPYMEQFNASKGSKLVEVQPVYDAIYGGYSKRYKSIADL 139 DNVQPN ALA++EVDANFFQHVPYME+FN + + LV V P+Y A YG YSK Y S+ +L Sbjct: 75 DNVQPNTALASEEVDANFFQHVPYMEEFNRNNDANLVPVTPIYFANYGVYSKEYASMDEL 134 Query: 140 PEGATLVMANDPSNTGRSLQMFAKAGLIKLKEGVGIQATQADITENAKKFKFQEXXXXXX 199 PEG+ + +AND SN RSL + A+ G+I LKE + TQADI EN K ++F+E Sbjct: 135 PEGSVIAIANDVSNIDRSLSLLAQHGVITLKEKEDVYYTQADIIENPKNYQFEEVDLLML 194 Query: 200 XXXXXXXXXXXXTPAYASPLGLTPKKDALITEGSDSEFTITLVAREDNKDSDAIQKLAKR 259 TPAYA+PLGLTPK D L+TEG +++F ITLVAREDN DS+ IQKLA+ Sbjct: 195 ARMYDDADAVVMTPAYAAPLGLTPKSDGLLTEGIENDFAITLVAREDNVDSEPIQKLAEA 254 Query: 260 ISGPEVKKFLEDNYADIALPAF 281 ++ EV+ FLE+NY + A+PAF Sbjct: 255 MTSEEVRTFLEENYDETAIPAF 276 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.132 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,293,348,521 Number of extensions: 46401596 Number of successful extensions: 106057 Number of sequences better than 1.0e-05: 1939 Number of HSP's gapped: 104023 Number of HSP's successfully gapped: 1941 Length of query: 281 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 147 Effective length of database: 1,798,280,193 Effective search space: 264347188371 Effective search space used: 264347188371 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 130 (54.7 bits)