BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0381.0002.p (202 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DHX0.1 B1DHX0_9BACL ABC transporter related 329 7e-89 B1YFP5.1 B1YFP5_EXIS2 ABC transporter related 280 5e-74 A7Z2C5.1 A7Z2C5_BACA2 YfmM 278 3e-73 A8MFN2.1 A8MFN2_ALKOO ABC transporter related 276 5e-73 O34512.2 YFMM_BACSU Uncharacterized ABC transporter ATP-binding ... 276 1e-72 >B1DHX0.1 B1DHX0_9BACL ABC transporter related Length = 518 Score = 329 bits (844), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 155/168 (92%), Positives = 166/168 (98%) Query: 1 MSILNVERLSHGFGDRAIFSDVSFRLLKGEHIGLIGANGEGKSTFMNIITGKLQPDEGKV 60 MSILNVERLSHGFGDRAIF+DVSFRLLKGEHIGLIGANGEGKSTFMNIITGKLQPD+GKV Sbjct: 1 MSILNVERLSHGFGDRAIFNDVSFRLLKGEHIGLIGANGEGKSTFMNIITGKLQPDDGKV 60 Query: 61 EWAKRMRAGYLDQHAVLTKGQSIRDVLRGAFQYLFDMEQEMNDMYGRMGDVSPEELEQML 120 EW+KRMR GYLDQHAVL+KG ++RDVL+GAFQYLFDMEQEMNDMYGRMGDVSPEELE++L Sbjct: 61 EWSKRMRVGYLDQHAVLSKGLTMRDVLKGAFQYLFDMEQEMNDMYGRMGDVSPEELEKLL 120 Query: 121 EDVGTIQDTLTNQDFYMIDAKIDETARGLGLTDIGLDKDVHDLSGGQR 168 EDVGTIQDTLTNQDFY+IDAKIDETARGLGLTD+GLDKDVHDLSGGQR Sbjct: 121 EDVGTIQDTLTNQDFYLIDAKIDETARGLGLTDVGLDKDVHDLSGGQR 168 >B1YFP5.1 B1YFP5_EXIS2 ABC transporter related Length = 518 Score = 280 bits (716), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 129/168 (76%), Positives = 150/168 (89%) Query: 1 MSILNVERLSHGFGDRAIFSDVSFRLLKGEHIGLIGANGEGKSTFMNIITGKLQPDEGKV 60 MSIL V LSHGFGDRAIF DVSFRLLKGEHIGL+GANGEGKSTFMNIIT +L+PDEGKV Sbjct: 1 MSILTVSNLSHGFGDRAIFEDVSFRLLKGEHIGLVGANGEGKSTFMNIITSQLEPDEGKV 60 Query: 61 EWAKRMRAGYLDQHAVLTKGQSIRDVLRGAFQYLFDMEQEMNDMYGRMGDVSPEELEQML 120 EWAK +R GYLDQHAVL+KG +IRD L+GAFQYLFD+EQE+ND+Y +MG+V P+ELE+ML Sbjct: 61 EWAKHVRVGYLDQHAVLSKGLTIRDALKGAFQYLFDIEQEINDLYTKMGEVEPDELEKML 120 Query: 121 EDVGTIQDTLTNQDFYMIDAKIDETARGLGLTDIGLDKDVHDLSGGQR 168 E+VG +QD LTN DFY IDAK++E ARGLGL +IGLD+DV +LSGGQR Sbjct: 121 EEVGVLQDILTNNDFYTIDAKVEEIARGLGLDEIGLDRDVQELSGGQR 168 >A7Z2C5.1 A7Z2C5_BACA2 YfmM Length = 518 Score = 278 bits (710), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 127/168 (75%), Positives = 151/168 (89%) Query: 1 MSILNVERLSHGFGDRAIFSDVSFRLLKGEHIGLIGANGEGKSTFMNIITGKLQPDEGKV 60 MSIL+V+ LSHGFGDRA+F++VSFRLLKGEH+GLIGANGEGKSTFMNIITGKL+PDEGKV Sbjct: 1 MSILSVKDLSHGFGDRALFNNVSFRLLKGEHVGLIGANGEGKSTFMNIITGKLEPDEGKV 60 Query: 61 EWAKRMRAGYLDQHAVLTKGQSIRDVLRGAFQYLFDMEQEMNDMYGRMGDVSPEELEQML 120 EWAK +R GYLDQH VL KG++IRDVL+ AF YLF ME+EMN++Y +MG+ P+ELEQ+L Sbjct: 61 EWAKNVRVGYLDQHTVLEKGKTIRDVLKDAFHYLFAMEEEMNEIYNKMGEADPDELEQLL 120 Query: 121 EDVGTIQDTLTNQDFYMIDAKIDETARGLGLTDIGLDKDVHDLSGGQR 168 EDVG IQD LTN DFY+ID+K++E ARGLGL D+GLD+DV DLSGGQR Sbjct: 121 EDVGVIQDALTNNDFYVIDSKVEEIARGLGLQDVGLDRDVTDLSGGQR 168 >A8MFN2.1 A8MFN2_ALKOO ABC transporter related Length = 518 Score = 276 bits (707), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 130/168 (77%), Positives = 152/168 (90%) Query: 1 MSILNVERLSHGFGDRAIFSDVSFRLLKGEHIGLIGANGEGKSTFMNIITGKLQPDEGKV 60 MSIL V+ L+HGFGDRAIF++VSFRLLKGEHIGLIGANGEGKSTFMNIITGKL+PD+G+V Sbjct: 1 MSILTVKNLTHGFGDRAIFNNVSFRLLKGEHIGLIGANGEGKSTFMNIITGKLEPDDGQV 60 Query: 61 EWAKRMRAGYLDQHAVLTKGQSIRDVLRGAFQYLFDMEQEMNDMYGRMGDVSPEELEQML 120 EW+KR+R GYLDQH VL +G SIRDVL+GAFQYLFD+E EMN + +MGD S +ELE++L Sbjct: 61 EWSKRVRVGYLDQHTVLERGMSIRDVLKGAFQYLFDLETEMNTICEKMGDASEDELEKLL 120 Query: 121 EDVGTIQDTLTNQDFYMIDAKIDETARGLGLTDIGLDKDVHDLSGGQR 168 ED+GTIQDTLTN DFY+ID+K++E ARGLGL DIGLDKDV DLSGGQR Sbjct: 121 EDMGTIQDTLTNNDFYIIDSKVEEIARGLGLEDIGLDKDVQDLSGGQR 168 >O34512.2 YFMM_BACSU Uncharacterized ABC transporter ATP-binding protein yfmM EC=3.6.3.- Length = 518 Score = 276 bits (705), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 126/168 (75%), Positives = 152/168 (90%) Query: 1 MSILNVERLSHGFGDRAIFSDVSFRLLKGEHIGLIGANGEGKSTFMNIITGKLQPDEGKV 60 MSIL+V+ LSHGFGDRAIF++VSFRLLKGEH+GLIGANGEGKSTFMNIITGKL+PDEGKV Sbjct: 1 MSILSVKDLSHGFGDRAIFNNVSFRLLKGEHVGLIGANGEGKSTFMNIITGKLEPDEGKV 60 Query: 61 EWAKRMRAGYLDQHAVLTKGQSIRDVLRGAFQYLFDMEQEMNDMYGRMGDVSPEELEQML 120 EW+K +R GYLDQH VL KG+SIRDVL+ AF YLF ME+EMN++Y +MG+ P+ELE++L Sbjct: 61 EWSKNVRVGYLDQHTVLEKGKSIRDVLKDAFHYLFAMEEEMNEIYNKMGEADPDELEKLL 120 Query: 121 EDVGTIQDTLTNQDFYMIDAKIDETARGLGLTDIGLDKDVHDLSGGQR 168 E+VG IQD LTN DFY+ID+K++E ARGLGL+DIGL++DV DLSGGQR Sbjct: 121 EEVGVIQDALTNNDFYVIDSKVEEIARGLGLSDIGLERDVTDLSGGQR 168 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.138 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,187,564,321 Number of extensions: 49425645 Number of successful extensions: 285197 Number of sequences better than 1.0e-05: 7071 Number of HSP's gapped: 285553 Number of HSP's successfully gapped: 9366 Length of query: 202 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 73 Effective length of database: 1,845,385,268 Effective search space: 134713124564 Effective search space used: 134713124564 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)