BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0378.0005.p
         (107 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KBN5.1 B3KBN5_9BACI Putative uncharacterized protein                160   3e-38
B1DDX8.1 B1DDX8_9BACL Putative uncharacterized protein                110   3e-23
B2A6D3.1 B2A6D3_NATTJ Putative uncharacterized protein                101   2e-20
C0ZHJ2.1 C0ZHJ2_BREBN Putative uncharacterized protein                 97   4e-19
C0GHD0.1 C0GHD0_9FIRM Putative uncharacterized protein                 97   6e-19

>B3KBN5.1 B3KBN5_9BACI Putative uncharacterized protein
          Length = 108

 Score =  160 bits (405), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 90/106 (84%), Positives = 100/106 (94%)

Query: 1   MNVFLSKAVLDFFIACGIVLGGAMLGGIGAVVSLQPPTQTMLDVADRIKIWALAAAVGGT 60
           M+VFLSKA+LDFFIA GIVLGGAM+GG+GAV+SLQPPT TM++VADRIKIWALAAA+GGT
Sbjct: 1   MSVFLSKAILDFFIAFGIVLGGAMVGGVGAVLSLQPPTLTMIEVADRIKIWALAAAIGGT 60

Query: 61  IDPMRVIESNMLGGNLSPAIKQILYLVFAFLGAHMGSELVKWVCGK 106
           IDPMRVIESNM+ GNLSPAIKQ+LYL FAFLGAHMGSELVKWVC  
Sbjct: 61  IDPMRVIESNMVVGNLSPAIKQVLYLGFAFLGAHMGSELVKWVCSS 106


>B1DDX8.1 B1DDX8_9BACL Putative uncharacterized protein
          Length = 85

 Score =  110 bits (276), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/81 (65%), Positives = 63/81 (77%)

Query: 24  MLGGIGAVVSLQPPTQTMLDVADRIKIWALAAAVGGTIDPMRVIESNMLGGNLSPAIKQI 83
           ML G+G+V  L PPT  ML  A  +KIWA+ AAVGG+IDPMRVIESN+  G+LSPA+ QI
Sbjct: 1   MLAGLGSVFLLLPPTSMMLSTAANLKIWAIVAAVGGSIDPMRVIESNIAEGHLSPAVLQI 60

Query: 84  LYLVFAFLGAHMGSELVKWVC 104
            Y+  AFLGAHMG+ELVK VC
Sbjct: 61  AYIAIAFLGAHMGTELVKLVC 81


>B2A6D3.1 B2A6D3_NATTJ Putative uncharacterized protein
          Length = 109

 Score =  101 bits (252), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 73/105 (69%)

Query: 1   MNVFLSKAVLDFFIACGIVLGGAMLGGIGAVVSLQPPTQTMLDVADRIKIWALAAAVGGT 60
           M+ F    +++F IA G+V+GG+ +GG+GA +  QPP QT L +A+++KIWAL A++GGT
Sbjct: 1   MSTFFGTLIVNFSIALGVVIGGSFIGGLGASIGGQPPIQTTLTIAEKLKIWALVASLGGT 60

Query: 61  IDPMRVIESNMLGGNLSPAIKQILYLVFAFLGAHMGSELVKWVCG 105
              ++ IE   LGG L   +KQ+++++ AFLGAH G  ++ ++ G
Sbjct: 61  FTTIKEIEMGFLGGQLHTVVKQLIFILGAFLGAHSGVIIISFIAG 105


>C0ZHJ2.1 C0ZHJ2_BREBN Putative uncharacterized protein
          Length = 122

 Score = 97.1 bits (240), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 47/99 (47%), Positives = 71/99 (71%), Gaps = 1/99 (1%)

Query: 5   LSKAVLDFFIACGIVLGGAMLGGIGAVVSLQPPTQTMLDVADRIKIWALAAAVGGTIDPM 64
           +++ +L FF+A GIV+GGA+ GG+GA ++ +PP  +M  +AD++KIW L  A+GGT D  
Sbjct: 20  MAQVILTFFVAYGIVVGGALSGGVGAFLTEKPPLLSMAQLADQLKIWGLVGALGGTFDSF 79

Query: 65  RVIESNMLGGNLSPAIKQILYLVFAFLGAHMGSELVKWV 103
             IE  +L GNL+P  KQ++ +V AFLGAH+G+  V W+
Sbjct: 80  LQIE-KILMGNLTPVFKQLVMIVVAFLGAHIGTICVHWL 117


>C0GHD0.1 C0GHD0_9FIRM Putative uncharacterized protein
          Length = 109

 Score = 96.7 bits (239), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 71/105 (67%)

Query: 1   MNVFLSKAVLDFFIACGIVLGGAMLGGIGAVVSLQPPTQTMLDVADRIKIWALAAAVGGT 60
           M   L    ++ FI+ G++LGG ++G +GAV + Q P  TM+++AD++KIWAL +A+GGT
Sbjct: 1   MTQLLDTLTINAFISFGVILGGTLIGSLGAVFTGQAPGHTMIELADKLKIWALVSALGGT 60

Query: 61  IDPMRVIESNMLGGNLSPAIKQILYLVFAFLGAHMGSELVKWVCG 105
            D +R IE+  LG  ++   KQ+L ++ AFLGAH G  L+ ++ G
Sbjct: 61  FDALRAIETGFLGLQINTVAKQVLMILAAFLGAHTGYLLILYLTG 105


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.326    0.142    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 637,088,253
Number of extensions: 23367773
Number of successful extensions: 116633
Number of sequences better than 1.0e-05: 119
Number of HSP's gapped: 116633
Number of HSP's successfully gapped: 119
Length of query: 107
Length of database: 3,060,696,203
Length adjustment: 75
Effective length of query: 32
Effective length of database: 2,354,120,078
Effective search space: 75331842496
Effective search space used: 75331842496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 125 (52.8 bits)