BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0378.0004.p
         (167 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KBN4.1 B3KBN4_9BACI Putative uncharacterized protein                199   7e-50
B1DDX9.1 B1DDX9_9BACL Putative uncharacterized protein                106   6e-22

>B3KBN4.1 B3KBN4_9BACI Putative uncharacterized protein
          Length = 167

 Score =  199 bits (506), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 95/161 (59%), Positives = 123/161 (76%), Gaps = 4/161 (2%)

Query: 1   MRVPPFRQYRRFSQLSAIFVLGMVVGSVMYNAVFHMGYNVLWVNNQDLRVQIEQYRKDIQ 60
           MRVPP  ++R F Q+++IFVLGMVVGS++YN+V+H  YN LW  NQ+ +++I QY KDI 
Sbjct: 1   MRVPPAHRFRPFYQVASIFVLGMVVGSILYNSVYHAAYNKLWETNQEQQLKITQYEKDID 60

Query: 61  TLKKYNNTSTVIREIKLRTEDSKVKEGAAALDPVTVKEIIRKMGTDLEPMRGRSMFDIDT 120
           +LKKYN  STVI+EIK+R+E    +     LDPV +KE++R M  DL  +RGR++FDIDT
Sbjct: 61  SLKKYNKQSTVIKEIKIRSE----QNDREPLDPVIIKELVRLMSDDLAALRGRNVFDIDT 116

Query: 121 DGKLARLLLDGKIYIVREKEYAVRIRTMLVMEGVLQIWVEI 161
           D KL R LL  KIY VREK+Y V+I+TMLVMEGVLQIWV +
Sbjct: 117 DSKLTRSLLSDKIYTVREKDYKVQIKTMLVMEGVLQIWVGV 157


>B1DDX9.1 B1DDX9_9BACL Putative uncharacterized protein
          Length = 171

 Score =  106 bits (265), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 105/168 (62%), Gaps = 2/168 (1%)

Query: 1   MRVPPFRQYRRFSQLSAIFVLGMVVGSVMYNAVFHMGYNVLWVNNQDLRVQIEQYRKDIQ 60
           MRVP F +Y +  Q+  + +LGM++G+++YN+++H  +  L     DL V++EQ   +I+
Sbjct: 1   MRVPQFERYVKGVQMLGVLLLGMLLGAIIYNSIYHAQFEALVNLKSDLEVKLEQSETEIK 60

Query: 61  TLKKYNNTSTVIREIKLRTEDSKVKEGA-AALDPVTVKEIIRKMGTDLEPMRGRSMFDID 119
            L ++ +  TVI+ +  R E+   +      LD VT  E+I+++  DL    G+S+++ID
Sbjct: 61  GLTQFKSQHTVIKSVVPRIEEEAGQNTDRPKLDKVTEAELIKRIKADLSVFLGQSIYEID 120

Query: 120 TDGKLARLLLDGKIYI-VREKEYAVRIRTMLVMEGVLQIWVEISPYRR 166
           TD +LAR LL  KIY  V EK+Y++ I T+LV E  LQ+WV++  Y R
Sbjct: 121 TDAQLARRLLSNKIYTNVLEKDYSIDITTILVAENKLQVWVKVRLYAR 168


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.324    0.139    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 927,835,811
Number of extensions: 34542319
Number of successful extensions: 139334
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 139335
Number of HSP's successfully gapped: 2
Length of query: 167
Length of database: 3,060,696,203
Length adjustment: 125
Effective length of query: 42
Effective length of database: 1,883,069,328
Effective search space: 79088911776
Effective search space used: 79088911776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 126 (53.1 bits)