BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0378.0003.p
         (104 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KBN3.1 B3KBN3_9BACI Putative uncharacterized protein                114   2e-24
B1DDY0.1 B1DDY0_9BACL Putative uncharacterized protein                 57   6e-07

>B3KBN3.1 B3KBN3_9BACI Putative uncharacterized protein
          Length = 103

 Score =  114 bits (286), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/101 (51%), Positives = 79/101 (78%)

Query: 1   MILFIKYVLFILMIICLIGAAVYSYTSRRAQDPLEKGAKRSIMNILLGAMLVSLSLICMF 60
           MI  I Y+L+I++++ ++ AA+YS  +RR  DP+++G   S+MN+ +G MLVSLSL+CMF
Sbjct: 1   MITVIHYILYIILVLSVVAAALYSIRARRVADPVDRGIHMSMMNLCMGIMLVSLSLVCMF 60

Query: 61  VFRGSTVNVMIEAVFLLIGAFNIFSGLRSYGFYSRNRKNRT 101
           +F GST  V++EA FL++GAFNIF+G+RS  +YSR + +RT
Sbjct: 61  LFSGSTPAVIVEAAFLVLGAFNIFAGIRSRTYYSRLKNSRT 101


>B1DDY0.1 B1DDY0_9BACL Putative uncharacterized protein
          Length = 98

 Score = 57.0 bits (136), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 56/89 (62%)

Query: 5  IKYVLFILMIICLIGAAVYSYTSRRAQDPLEKGAKRSIMNILLGAMLVSLSLICMFVFRG 64
          +++V    ++I L     +S+ SRR+ D   +G   S MNI +G ML+ ++ + +F+   
Sbjct: 5  LQWVFAPGIMITLALTVFFSFRSRRSTDARARGLHASRMNISMGFMLMFIAGVQLFLSGT 64

Query: 65 STVNVMIEAVFLLIGAFNIFSGLRSYGFY 93
          ST  ++I A+FL+IG FN+F+GLR++  +
Sbjct: 65 STARIVIGAIFLVIGFFNLFAGLRNHSIF 93


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.335    0.146    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 510,556,314
Number of extensions: 15995326
Number of successful extensions: 92195
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 92198
Number of HSP's successfully gapped: 2
Length of query: 104
Length of database: 3,060,696,203
Length adjustment: 72
Effective length of query: 32
Effective length of database: 2,382,383,123
Effective search space: 76236259936
Effective search space used: 76236259936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 126 (53.1 bits)