BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0378.0002.p (444 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KBN2.1 B3KBN2_9BACI DRTGG domain protein 701 0.0 B1DDY2.1 B1DDY2_9BACL Putative signal-transduction protein with ... 468 e-130 C0Z7V6.1 C0Z7V6_BREBN Putative uncharacterized protein ytoI 428 e-118 C3ERK5.1 C3ERK5_BACTK Putative uncharacterized protein 419 e-115 C2XHQ8.1 C2XHQ8_BACCE Putative uncharacterized protein 419 e-115 >B3KBN2.1 B3KBN2_9BACI DRTGG domain protein Length = 444 Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/439 (76%), Positives = 387/439 (88%) Query: 6 DNITKHEQLLQHIESLKVGTKISVRKLAREMGVSEGTAYRAVKEAENLGIVITKERIGTV 65 D ITKHEQL+Q+IESLKVG+KISVR+LA+EMGVSEGTAYRAVKEAE+LGIV+TKERIGTV Sbjct: 6 DTITKHEQLVQYIESLKVGSKISVRRLAKEMGVSEGTAYRAVKEAESLGIVVTKERIGTV 65 Query: 66 RVEKKPRNISDQLTFGDVVDIVEGHVLGGANGLNKHLHKYVIGAMKVDAMIRYIDADSLL 125 RVE+KPRNIS+QLTF DVV+IVEGHVLGGA GLNK LHKYVIGAMKV+AMIRYIDA SL+ Sbjct: 66 RVERKPRNISEQLTFADVVEIVEGHVLGGAEGLNKSLHKYVIGAMKVEAMIRYIDAGSLM 125 Query: 126 IVGNREDVHSLALEQGAGVLVTGGFGTSREVKMLADELDLPVISSRHDTFTVASMINRAI 185 IVGNRED HSLALEQGAGVL+TGGFGTSREVK+LAD+LDLP+ISSRHDTFTVASMINRAI Sbjct: 126 IVGNREDAHSLALEQGAGVLITGGFGTSREVKLLADQLDLPIISSRHDTFTVASMINRAI 185 Query: 186 FDRLIKKKIMLVEDIVDSKPRLNTLKISSTVAELRQLSLDSGEQRFPVTDEWNRVIGIVG 245 FDRLIKKKIMLVEDI KP+ + LK S TV E +++S ++GE R+PVTDEWNRVIGIVG Sbjct: 186 FDRLIKKKIMLVEDIAHDKPKNHQLKNSVTVQEFKRISQETGENRYPVTDEWNRVIGIVG 245 Query: 246 RRDAEELAEGQSIEKVMVRSPVXXXXXXXXXXXXXIMMWEGIDFLPIVDRNRKLVGSLTR 305 RD E LAE Q IEK M R+PV IMMWEGIDFLPIVDRNRKL+ ++TR Sbjct: 246 VRDVEGLAETQPIEKAMTRNPVTASMKTSLASAAQIMMWEGIDFLPIVDRNRKLLATVTR 305 Query: 306 REVLQSLRDVSNQPQLGETFDHLIWNGFADERDEEGKLFFHGFITPQMATDLGTISEGVL 365 +EVL +LRD NQPQLGETFD LIWNG A++RDEEG+LFFHGFITPQMA++LGTIS+GVL Sbjct: 306 KEVLGALRDARNQPQLGETFDQLIWNGIAEDRDEEGRLFFHGFITPQMASELGTISQGVL 365 Query: 366 STLMTLSAFKAAKDITGNDYVLDNMSTYFIRPVQIEHSIIVMPKLLEISRRTCKLEIEIS 425 +T+++L+A KAAKDI+G D+VLD++STYFIRPVQIE I++MPKLLE+SRRTCK+EIEI Sbjct: 366 TTVISLAAVKAAKDISGWDHVLDHLSTYFIRPVQIEDPIVIMPKLLELSRRTCKMEIEIQ 425 Query: 426 HMDILVAKAVLMLQSIDHG 444 H L+AKAV+ +Q+IDHG Sbjct: 426 HQTSLIAKAVMTMQAIDHG 444 >B1DDY2.1 B1DDY2_9BACL Putative signal-transduction protein with CBS and DRTGG domains Length = 445 Score = 468 bits (1204), Expect = e-130, Method: Compositional matrix adjust. Identities = 231/437 (52%), Positives = 316/437 (72%), Gaps = 1/437 (0%) Query: 6 DNITKHEQLLQHIESLKVGTKISVRKLAREMGVSEGTAYRAVKEAENLGIVITKERIGTV 65 D TK EQ+LQ+IE+L +G KISVR +A+ +GVSEGTAY+A+KEAE G+V TKERIGTV Sbjct: 8 DTSTKREQILQYIETLDIGEKISVRAIAKALGVSEGTAYKAIKEAEASGLVSTKERIGTV 67 Query: 66 RVEKKPRNISDQLTFGDVVDIVEGHVLGGANGLNKHLHKYVIGAMKVDAMIRYIDADSLL 125 R++++ R DQLTFG+V +IVEGH+ GG +GL+K LHK+VIGAM++DAM+RYID SLL Sbjct: 68 RIDRRRREALDQLTFGEVAEIVEGHIFGGTSGLDKSLHKFVIGAMELDAMLRYIDEGSLL 127 Query: 126 IVGNREDVHSLALEQGAGVLVTGGFGTSREVKMLADELDLPVISSRHDTFTVASMINRAI 185 IVGNR H ALEQGAGVL+TGGF S EVK LA+E LP+ISSRHDTFTVASMINRA+ Sbjct: 128 IVGNRGGAHRCALEQGAGVLITGGFEPSEEVKALANENGLPIISSRHDTFTVASMINRAM 187 Query: 186 FDRLIKKKIMLVEDIVDSKPRLNTLKISSTVAELRQLSLDSGEQRFPVTDEWNRVIGIVG 245 +DRLIK+KIML+ED++ + L+ +T+ + +LS ++G RFPV D+ RV+G++ Sbjct: 188 YDRLIKRKIMLIEDLMTFSRPADVLRSGNTLLDFHKLSRETGNYRFPVIDDRGRVVGMMT 247 Query: 246 RRDAEELAEGQSIEKVMVRSPVXXXXXXXXXXXXXIMMWEGIDFLPIVDRNRKLVGSLTR 305 +DA ++ I+K+M R P+ M EGID LPIVDR+RKL+G +TR Sbjct: 248 SKDATGSSDDSPIDKLMTRHPITAAPNIAVTSAAHTMAAEGIDLLPIVDRHRKLLGVVTR 307 Query: 306 REVLQSLRDVSNQPQLGETFDHLIWNGFADERDEEGKLFFHGFITPQMATDLGTISEGVL 365 +++L +LR Q ++GETFD LIW+GF E + +G + G ITPQM+ LG +SEG+L Sbjct: 308 QQLLDALRFAGKQQEIGETFDDLIWSGFEAE-EVDGVPLYKGAITPQMSGSLGMVSEGIL 366 Query: 366 STLMTLSAFKAAKDITGNDYVLDNMSTYFIRPVQIEHSIIVMPKLLEISRRTCKLEIEIS 425 TLMTL+ + +D DY++D M+ +F++PVQI+ I ++P+ LE+SR++ KLEIE+ Sbjct: 367 VTLMTLAGRQMIRDAGKRDYLIDGMTAFFVKPVQIDSQIKIVPRALEMSRKSTKLEIELI 426 Query: 426 HMDILVAKAVLMLQSID 442 L AKA++ Q ID Sbjct: 427 DQTGLAAKAMMTAQMID 443 >C0Z7V6.1 C0Z7V6_BREBN Putative uncharacterized protein ytoI Length = 436 Score = 428 bits (1100), Expect = e-118, Method: Compositional matrix adjust. Identities = 218/434 (50%), Positives = 307/434 (70%), Gaps = 1/434 (0%) Query: 9 TKHEQLLQHIESLKVGTKISVRKLAREMGVSEGTAYRAVKEAENLGIVITKERIGTVRVE 68 TKHEQ+LQHI+ L +G+KISVR++A+++ VSEGTAYRA+KEAE G V T ER+GTVR+E Sbjct: 3 TKHEQILQHIDRLPIGSKISVRQIAKDLDVSEGTAYRAIKEAETQGYVSTIERVGTVRIE 62 Query: 69 KKPRNISDQLTFGDVVDIVEGHVLGGANGLNKHLHKYVIGAMKVDAMIRYIDADSLLIVG 128 KK + ++LTF +VV+IV+GHV G GL+K L+K+VIGAM+++AM+RYIDA SLLIVG Sbjct: 63 KKQKENIERLTFAEVVNIVDGHVQAGREGLHKTLNKFVIGAMQLEAMMRYIDAGSLLIVG 122 Query: 129 NREDVHSLALEQGAGVLVTGGFGTSREVKMLADELDLPVISSRHDTFTVASMINRAIFDR 188 NR H +AL+QGA VL+TGGF TS E+K LAD L LP+ISS +D+FTVASMINRAI+DR Sbjct: 123 NRYQAHKIALQQGAAVLITGGFDTSEEIKQLADRLALPIISSSYDSFTVASMINRAIYDR 182 Query: 189 LIKKKIMLVEDIVDSKPRLNTLKISSTVAELRQLSLDSGEQRFPVTDEWNRVIGIVGRRD 248 LIKK+I++VEDI+ L S +VA+ Q + + RFPV DE R+IGIV +D Sbjct: 183 LIKKEIVMVEDILKPLAETPVLLTSDSVAKWHQYTELYQDTRFPVVDEQMRLIGIVTSKD 242 Query: 249 AEELAEGQSIEKVMVRSPVXXXXXXXXXXXXXIMMWEGIDFLPIVDRNRKLVGSLTRREV 308 E I+KVM ++P+ M+WEGI+ LP+VD +RKLVG L+R +V Sbjct: 243 IIGHEETAIIDKVMTKNPITTSPRVSVASSAHTMVWEGIELLPVVDNHRKLVGVLSRNDV 302 Query: 309 LQSLRDVSNQPQLGETFDHLIWNGFADERDEEGKLFFHGFITPQMATDLGTISEGVLSTL 368 L++L+ + QPQ+ ETF +LI + F +ER + ++ + G ++PQM LGTI+ G+++T+ Sbjct: 303 LKALQFTAKQPQMSETFPNLIMSHFREERQAD-EMVYLGDVSPQMTNHLGTIASGIMTTV 361 Query: 369 MTLSAFKAAKDITGNDYVLDNMSTYFIRPVQIEHSIIVMPKLLEISRRTCKLEIEISHMD 428 M +A + D V +N++ YF++PVQ+E I V P+LL+ISRR K+E+ + H D Sbjct: 362 MVEAACNLLRHHRRGDMVPENITVYFLKPVQMESHIEVKPRLLDISRRFGKVEVSVFHGD 421 Query: 429 ILVAKAVLMLQSID 442 LV +A++ Q I+ Sbjct: 422 QLVGQAMITAQIIE 435 >C3ERK5.1 C3ERK5_BACTK Putative uncharacterized protein Length = 437 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 205/434 (47%), Positives = 307/434 (70%) Query: 9 TKHEQLLQHIESLKVGTKISVRKLAREMGVSEGTAYRAVKEAENLGIVITKERIGTVRVE 68 TKH Q+L+HI SL VG KISVR++A+++ VSEGTAYRA+K+AEN G V T ER+GT+R+E Sbjct: 3 TKHNQILEHINSLPVGHKISVRQIAKDLSVSEGTAYRAIKDAENKGYVSTIERVGTIRIE 62 Query: 69 KKPRNISDQLTFGDVVDIVEGHVLGGANGLNKHLHKYVIGAMKVDAMIRYIDADSLLIVG 128 +K + ++LT+ +VV+IV+G VLGG GL+K L+K+VIGAMK++AM+RY +A +LLIVG Sbjct: 63 QKKKENIEKLTYAEVVNIVDGQVLGGREGLHKTLNKFVIGAMKLEAMMRYTEAGNLLIVG 122 Query: 129 NREDVHSLALEQGAGVLVTGGFGTSREVKMLADELDLPVISSRHDTFTVASMINRAIFDR 188 NR + H LALE GA VL+TGGF T VK LADEL LP+ISS +DTFTVA++INRAI+D+ Sbjct: 123 NRTNAHQLALETGAAVLITGGFDTEDHVKKLADELKLPIISSSYDTFTVATLINRAIYDQ 182 Query: 189 LIKKKIMLVEDIVDSKPRLNTLKISSTVAELRQLSLDSGEQRFPVTDEWNRVIGIVGRRD 248 LIKK+I+LVEDI+ LK + TV + + ++ R+P+ DE N+V+GIV +D Sbjct: 183 LIKKEIVLVEDILTPIEETLYLKPNDTVQQWHAYNEETMHGRYPIVDESNKVLGIVTSKD 242 Query: 249 AEELAEGQSIEKVMVRSPVXXXXXXXXXXXXXIMMWEGIDFLPIVDRNRKLVGSLTRREV 308 +A+ I+KVM + P+ +M+WEGI+ LP+VD KL G ++R++V Sbjct: 243 MIGVAKETPIDKVMTKHPITVNGKMSVAAAARMMVWEGIELLPVVDEGNKLQGIISRQDV 302 Query: 309 LQSLRDVSNQPQLGETFDHLIWNGFADERDEEGKLFFHGFITPQMATDLGTISEGVLSTL 368 LQ+L+ + QPQ+GET D ++ N F ++ + + + +TPQM +GT+S GV +T+ Sbjct: 303 LQALQMIQRQPQVGETIDDIVTNQFMTPKEAKNEHLYQFSVTPQMTNSIGTLSYGVFATI 362 Query: 369 MTLSAFKAAKDITGNDYVLDNMSTYFIRPVQIEHSIIVMPKLLEISRRTCKLEIEISHMD 428 +T + + + +D +++N++ YF++PVQI++ + V PK+LEI R+ K+++E+ H Sbjct: 363 VTEATNRVIRAQKKSDLIVENLTIYFVKPVQIDNVVSVHPKVLEIGRKFGKVDVEVHHEG 422 Query: 429 ILVAKAVLMLQSID 442 +V KA+LM+Q ID Sbjct: 423 NVVGKALLMVQLID 436 >C2XHQ8.1 C2XHQ8_BACCE Putative uncharacterized protein Length = 437 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 205/434 (47%), Positives = 307/434 (70%) Query: 9 TKHEQLLQHIESLKVGTKISVRKLAREMGVSEGTAYRAVKEAENLGIVITKERIGTVRVE 68 TKH Q+L+HI SL VG KISVR++A+++ VSEGTAYRA+K+AEN G V T ER+GT+R+E Sbjct: 3 TKHNQILEHINSLPVGHKISVRQIAKDLSVSEGTAYRAIKDAENKGYVSTIERVGTIRIE 62 Query: 69 KKPRNISDQLTFGDVVDIVEGHVLGGANGLNKHLHKYVIGAMKVDAMIRYIDADSLLIVG 128 +K + ++LT+ +VV+IV+G VLGG GL+K L+K+VIGAMK++AM+RY +A +LLIVG Sbjct: 63 QKKKENIEKLTYAEVVNIVDGQVLGGREGLHKTLNKFVIGAMKLEAMMRYTEAGNLLIVG 122 Query: 129 NREDVHSLALEQGAGVLVTGGFGTSREVKMLADELDLPVISSRHDTFTVASMINRAIFDR 188 NR + H LALE GA VL+TGGF T VK LADEL LP+ISS +DTFTVA++INRAI+D+ Sbjct: 123 NRTNAHQLALETGAAVLITGGFDTEDHVKKLADELKLPIISSSYDTFTVATLINRAIYDQ 182 Query: 189 LIKKKIMLVEDIVDSKPRLNTLKISSTVAELRQLSLDSGEQRFPVTDEWNRVIGIVGRRD 248 LIKK+I+LVEDI+ LK + TV + + ++ R+P+ DE N+V+GIV +D Sbjct: 183 LIKKEIVLVEDILTPIEETLYLKPNDTVQQWHAYNEETMHGRYPIVDESNKVLGIVTSKD 242 Query: 249 AEELAEGQSIEKVMVRSPVXXXXXXXXXXXXXIMMWEGIDFLPIVDRNRKLVGSLTRREV 308 +A+ I+KVM + P+ +M+WEGI+ LP+VD KL G ++R++V Sbjct: 243 MIGVAKETPIDKVMTKHPITVNGKMSVAAAARMMVWEGIELLPVVDEGNKLQGIISRQDV 302 Query: 309 LQSLRDVSNQPQLGETFDHLIWNGFADERDEEGKLFFHGFITPQMATDLGTISEGVLSTL 368 LQ+L+ + QPQ+GET D ++ N F ++ + + + +TPQM +GT+S GV +T+ Sbjct: 303 LQALQMIQRQPQVGETIDDIVTNQFMTPKEAKNEHLYQFSVTPQMTNSIGTLSYGVFATI 362 Query: 369 MTLSAFKAAKDITGNDYVLDNMSTYFIRPVQIEHSIIVMPKLLEISRRTCKLEIEISHMD 428 +T + + + +D +++N++ YF++PVQI++ + V PK+LEI R+ K+++E+ H Sbjct: 363 VTEATNRVIRAQKKSDLIVENLTIYFVKPVQIDNVVSVHPKVLEIGRKFGKVDVEVHHEG 422 Query: 429 ILVAKAVLMLQSID 442 +V KA+LM+Q ID Sbjct: 423 NVVGKALLMVQLID 436 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,369,098,047 Number of extensions: 94156816 Number of successful extensions: 334650 Number of sequences better than 1.0e-05: 295 Number of HSP's gapped: 334165 Number of HSP's successfully gapped: 295 Length of query: 444 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 305 Effective length of database: 1,751,175,118 Effective search space: 534108410990 Effective search space used: 534108410990 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)