BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0378.0001.p (656 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KBN6.1 B3KBN6_9BACI DNA polymerase III, alpha subunit EC=2.7.7.7 950 0.0 B1DDX7.1 B1DDX7_9BACL DNA polymerase III, alpha subunit EC=2.7.7.7 792 0.0 C0GHD1.1 C0GHD1_9FIRM DNA polymerase III, alpha subunit EC=2.7.7.7 605 e-171 C0Z7W1.1 C0Z7W1_BREBN DNA polymerase III alpha subunit EC=2.7.7.7 580 e-163 B2A6D4.1 B2A6D4_NATTJ DNA polymerase III catalytic subunit, DnaE... 576 e-162 >B3KBN6.1 B3KBN6_9BACI DNA polymerase III, alpha subunit EC=2.7.7.7 Length = 1241 Score = 950 bits (2455), Expect = 0.0, Method: Compositional matrix adjust. Identities = 469/633 (74%), Positives = 524/633 (82%), Gaps = 14/633 (2%) Query: 2 LNLPYNEVDKAAKLIPGQLGISITRALEGTPELKALYDGNPKIKGLLDMAMKVEGMPRHA 61 LN+P+ +VDKAAKLIP LGISI RA+E +P+LK Y+ PK++ L+DMAMKVEGMPRHA Sbjct: 453 LNVPFGDVDKAAKLIPNHLGISIERAMEQSPQLKEQYETKPKVRELIDMAMKVEGMPRHA 512 Query: 62 STHAAGVVISKGPLTDAVPLQAGNESTALTQYSMEHLESIGLLKMDFLGLRTLSIIERSM 121 STHAAG+VIS+ PLTDAVPLQ G+E TALTQYSME+LES+GLLKMDFLGLRTLSIIER++ Sbjct: 513 STHAAGIVISREPLTDAVPLQEGSEKTALTQYSMENLESVGLLKMDFLGLRTLSIIERTL 572 Query: 122 NWITEMTGSTPDFRTIPDDDPLTYEMLGAGETTGVFQMESAGIRRVLKDMKPSGFEDIIS 181 WI E+TGS DF +PDDD TYEMLG GET GVFQ+ESAGIRRVLKD+KPS FEDI+S Sbjct: 573 KWIQELTGSELDFEQVPDDDQATYEMLGRGETAGVFQLESAGIRRVLKDLKPSVFEDIVS 632 Query: 182 VVALYRPGPMEFIPKYIAGKHGQIEVEYPHDDLKQILDDTYGIIVYQEQIMQIASLMAGF 241 V ALYRPGPMEFIPK+I KHG+IE EYPH DL IL DTYGIIVYQEQIMQIAS MAGF Sbjct: 633 VNALYRPGPMEFIPKFIQAKHGRIEPEYPHPDLIPILGDTYGIIVYQEQIMQIASTMAGF 692 Query: 242 SLGEADLLRRAVSKKKRETLDKERGHFVQGSLQQGYTETDANAVYDMIVRFANYGFPRAH 301 SLGEADLLRRAVSKKKRE LD+ER HFV GSL+ GYTE +AN VYDMIVRFANYGFPRAH Sbjct: 693 SLGEADLLRRAVSKKKREVLDRERSHFVSGSLKLGYTEDEANRVYDMIVRFANYGFPRAH 752 Query: 302 AAAYGVLAFQTAYLKAHYPVQFMAAMLTAVMGTHRKVAEYVLECRRSGIGVLPPDVNESG 361 AAAYGVLAFQTAYLKAHYPV FMA+MLTAVMG+HRKVAEYVLE RR I V+PPDVNESG Sbjct: 753 AAAYGVLAFQTAYLKAHYPVPFMASMLTAVMGSHRKVAEYVLEARRIDIEVMPPDVNESG 812 Query: 362 VLFTPV----PGEGM---------GAIRFGLAAVKNVGTLAVENIIEVRKERPFDSLLDF 408 FTPV EG G IRFGLAA+KNVGT AVENI+E+R+E+PF+SLLDF Sbjct: 813 TYFTPVMSRTAAEGSDKQADSPAGGGIRFGLAAIKNVGTQAVENIVEIRREKPFESLLDF 872 Query: 409 CRRVDLRICNKRVVESLLQAGAFDQLPGHRAQLLAMLDETVDAALKWRKERDELQIQLFD 468 CRRVDLR+CNKRV+ESL+QAGAFD L GHR+QL+AMLDETV+AA+KWRKERD+LQIQLF Sbjct: 873 CRRVDLRVCNKRVIESLIQAGAFDSLQGHRSQLVAMLDETVEAAVKWRKERDDLQIQLF- 931 Query: 469 DLIETPNWEIRYPDIPGFTVTQQXXXXXXXXXXXXSGHPLDDAAALLEEPGLQRLMDLGE 528 D +ET NW+I YPDIP +T +QQ SGHPLD L E G RLMDL E Sbjct: 932 DFVETANWDIEYPDIPPYTASQQLEFERELLGMYLSGHPLDGFEETLTESGADRLMDLHE 991 Query: 529 AADESQAVTAGMVVSVKEITTKAGKAMAFVEWEDQIERCEVVLFPEVWKRSRTLIVKGAL 588 A DES A AGMVVS+K ITTK GK+MAF+E EDQIERCEVVLFPEVWKRS LI KGAL Sbjct: 992 AEDESMATVAGMVVSLKTITTKQGKSMAFMECEDQIERCEVVLFPEVWKRSAHLIEKGAL 1051 Query: 589 LALRAKVQQEDEGFKLLAEEVAPLGADTLRGLL 621 LA+RAKVQ +DEGFKLLAEE+APL A TL L+ Sbjct: 1052 LAIRAKVQLQDEGFKLLAEEIAPLEAQTLGQLV 1084 >B1DDX7.1 B1DDX7_9BACL DNA polymerase III, alpha subunit EC=2.7.7.7 Length = 1220 Score = 792 bits (2045), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/615 (64%), Positives = 472/615 (76%), Gaps = 5/615 (0%) Query: 2 LNLPYNEVDKAAKLIPGQLGISITRALEGTPELKALYDGNPKIKGLLDMAMKVEGMPRHA 61 +N+P+ EVD+AAK+IP QL I++ AL + L+ P+ ++ MA+KVEGMPRHA Sbjct: 458 MNVPFAEVDRAAKMIPNQLHITLEEALRISEGLREACQRQPRTDAMIKMALKVEGMPRHA 517 Query: 62 STHAAGVVISKGPLTDAVPLQAGNESTALTQYSMEHLESIGLLKMDFLGLRTLSIIERSM 121 STHAAGVVIS GPLTD VPLQAG+E TALTQYSMEHLE++GLLKMDFLGLRTLSI+ERS+ Sbjct: 518 STHAAGVVISGGPLTDYVPLQAGSERTALTQYSMEHLEAVGLLKMDFLGLRTLSIVERSL 577 Query: 122 NWITEMTGSTPDFRTIPDDDPLTYEMLGAGETTGVFQMESAGIRRVLKDMKPSGFEDIIS 181 W+ + G DFR +PD+DP TY MLG GET G+FQ+ES+G+RRVLK+MKPS FEDI+S Sbjct: 578 AWVKGLYGKEIDFRKVPDNDPDTYAMLGRGETMGIFQLESSGVRRVLKEMKPSEFEDIVS 637 Query: 182 VVALYRPGPMEFIPKYIAGKHGQIEVEYPHDDLKQILDDTYGIIVYQEQIMQIASLMAGF 241 V+ALYRPGPMEFIP YI GKHG V+YPH L+ IL DTYGIIVYQEQIMQIAS MAGF Sbjct: 638 VLALYRPGPMEFIPNYIQGKHGLAPVKYPHPSLEPILSDTYGIIVYQEQIMQIASAMAGF 697 Query: 242 SLGEADLLRRAVSKKKRETLDKERGHFVQGSLQQGYTETDANAVYDMIVRFANYGFPRAH 301 SLGEADLLRRAVSKKKRE LD++R HFV+GS+ +GYT DAN VYDMIVRFA+YGFPRAH Sbjct: 698 SLGEADLLRRAVSKKKREVLDEQRAHFVKGSVSEGYTSEDANLVYDMIVRFADYGFPRAH 757 Query: 302 AAAYGVLAFQTAYLKAHYPVQFMAAMLTAVMGTHRKVAEYVLECRRSGIGVLPPDVNESG 361 AAAYGVLAFQTA+LKAHYP+ FMA+ML +V G RK AEYV ECRR GI VLPPDVNESG Sbjct: 758 AAAYGVLAFQTAWLKAHYPIPFMASMLASVTGNQRKTAEYVDECRRMGIEVLPPDVNESG 817 Query: 362 VLFTPVPGEGMGAIRFGLAAVKNVGTLAVENIIEVRKERPFDSLLDFCRRVDLRICNKRV 421 V FTPV GA+RFGLAA+KNVGT A+E I + R+ERPFDSLLD CRRVDLR+ NKRV Sbjct: 818 VTFTPVE----GAVRFGLAAIKNVGTQAIEAIEKERRERPFDSLLDLCRRVDLRVVNKRV 873 Query: 422 VESLLQAGAFDQLPGHRAQLLAMLDETVDAALKWRKERDELQIQLFDDLIETPNWEIRYP 481 +ESL+QAGA + LPGHRAQ LA L+ETV+AALKWRKER+ELQI+LF E NW++ P Sbjct: 874 LESLIQAGALESLPGHRAQQLAALEETVEAALKWRKEREELQIELF-GFDEVQNWDVELP 932 Query: 482 DIPGFTVTQQXXXXXXXXXXXXSGHPLDDAAALLEEPGLQRLMDLGEAADESQAVTAGMV 541 DI ++ +Q SGHPLD LE GL R ++LGEAA+ + A V Sbjct: 933 DIRPYSTGEQLELERELLGLYLSGHPLDAVEEQLEPLGLDRFIELGEAAEGAAAFIGARV 992 Query: 542 VSVKEITTKAGKAMAFVEWEDQIERCEVVLFPEVWKRSRTLIVKGALLALRAKVQQEDEG 601 VS+K T K G AM F+E ED++ R E V+FP VWKR +VKG L + A VQ +DE Sbjct: 993 VSLKPFTNKKGNAMGFIEIEDRVMRAEGVVFPAVWKRCGDRLVKGGLAIIHATVQHQDED 1052 Query: 602 FKLLAEEVAPLGADT 616 FKL+ E+V P+ T Sbjct: 1053 FKLIIEDVVPIQEGT 1067 >C0GHD1.1 C0GHD1_9FIRM DNA polymerase III, alpha subunit EC=2.7.7.7 Length = 1144 Score = 605 bits (1559), Expect = e-171, Method: Compositional matrix adjust. Identities = 319/621 (51%), Positives = 422/621 (67%), Gaps = 12/621 (1%) Query: 1 VLNLPYNEVDKAAKLIPGQLGISITRALEGTPELKALYDGNPKIKGLLDMAMKVEGMPRH 60 VLN+PY +VD+ AKLIP +L ISI LE +P+LK LYD + KI+ LLD++M VEG+PRH Sbjct: 447 VLNVPYADVDRIAKLIPAELNISIADGLEKSPDLKELYDKDEKIRQLLDLSMAVEGLPRH 506 Query: 61 ASTHAAGVVISKGPLTDAVPLQAGNESTALTQYSMEHLESIGLLKMDFLGLRTLSIIERS 120 ASTHAAGVVISK PL + VPLQ E +TQ+ M LE +GLLKMDFLGLRTL+I+ + Sbjct: 507 ASTHAAGVVISKDPLVNYVPLQKAGEDGMVTQFPMGTLEELGLLKMDFLGLRTLTIMGEA 566 Query: 121 MNWITEMTGSTPDFRTIPDDDPLTYEMLGAGETTGVFQMESAGIRRVLKDMKPSGFEDII 180 + I + TG D +P DD T+ ML G+T+G+FQ+ES G+R +L++MKP FEDII Sbjct: 567 VRLIKKSTGVEVDLNELPLDDKNTFHMLSQGDTSGIFQLESGGMRGILREMKPDVFEDII 626 Query: 181 SVVALYRPGPMEFIPKYIAGKHGQIEVEYPHDDLKQILDDTYGIIVYQEQIMQIASLMAG 240 +VVALYRPGPME IP +I KHG I ++Y H DL+ IL +TYGI+VYQEQIMQ+AS MAG Sbjct: 627 AVVALYRPGPMEQIPTFIQSKHGHIPIKYLHSDLEPILKETYGIMVYQEQIMQVASAMAG 686 Query: 241 FSLGEADLLRRAVSKKKRETLDKERGHFVQGSLQQGYTETDANAVYDMIVRFANYGFPRA 300 FSLGE+DLLRRA+ KKK E L+++R FV G + +G+ + AN +YD+IV+FA+YGF ++ Sbjct: 687 FSLGESDLLRRAIGKKKLEVLNQQRELFVNGCVAKGHKKEMANELYDLIVKFASYGFNKS 746 Query: 301 HAAAYGVLAFQTAYLKAHYPVQFMAAMLTAVMGTHRKVAEYVLECRRSGIGVLPPDVNES 360 HAAAY ++A+QTAYLKA+YP QFMAA LT VMGT KVA Y+ C++ GI VLPPDVN S Sbjct: 747 HAAAYALVAYQTAYLKANYPTQFMAAQLTGVMGTTEKVAGYIANCKQMGISVLPPDVNLS 806 Query: 361 GVLFTPVPGEGMGAIRFGLAAVKNVGTLAVENIIEVRKER-PFDSLLDFCRRVDLRICNK 419 FT + IR+G+AAVKNVG A+E+II RKE+ F SL DFC RVDLR CNK Sbjct: 807 EKNFTVTDAK---VIRYGMAAVKNVGLGAIESIIAARKEQGDFTSLRDFCARVDLRSCNK 863 Query: 420 RVVESLLQAGAFDQLPGHRAQLLAMLDETVDAALKWRKERDELQIQLF------DDLIET 473 +V+ESL++AGAFD L +R QLLA+LDETV AA KER Q+ +F ++ + Sbjct: 864 KVMESLIKAGAFDCLGANRNQLLAILDETVSAAQTMHKERQNGQMCMFEVVEEDEEDCQW 923 Query: 474 PNWEIRYPDIPGFTVTQQXXXXXXXXXXXXSGHPLDDAAALLE-EPGLQRLMDLGEAADE 532 N + PDIP ++ +GHPL++ +L P L R L +A D Sbjct: 924 VNLQDDLPDIPAPLPRERLNMEKDTLGLYITGHPLEEYENVLNIYPDLARTDTLQKAPDN 983 Query: 533 SQAVTAGMVVSVKEITTKAGKAMAFVEWEDQIERCEVVLFPEVWKRSRTLIVKGALLALR 592 V AGM+ +K I TK GK MAF ED EVV+FP V + ++ + ++ + Sbjct: 984 KSVVIAGMINGLKPIITKKGKPMAFFTLEDLAGGLEVVVFPTVHETAKPFLENDQVVIVH 1043 Query: 593 AKV-QQEDEGFKLLAEEVAPL 612 + +E+E K++A+ ++PL Sbjct: 1044 GRTSHKEEEDVKIMADSISPL 1064 >C0Z7W1.1 C0Z7W1_BREBN DNA polymerase III alpha subunit EC=2.7.7.7 Length = 1142 Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust. Identities = 303/610 (49%), Positives = 403/610 (66%), Gaps = 7/610 (1%) Query: 2 LNLPYNEVDKAAKLIPGQLGISITRALEGTPELKALYDGNPKIKGLLDMAMKVEGMPRHA 61 L L VD+ AK+IP G++I RA++ P++ L N + L++ A VEG+PRHA Sbjct: 444 LGLSLGIVDRVAKMIPQSPGMTIERAMQINPDIGKLCAENKQAAQLIETARGVEGLPRHA 503 Query: 62 STHAAGVVISKGPLTDAVPLQAGNESTALTQYSMEHLESIGLLKMDFLGLRTLSIIERSM 121 STHAAGVVIS+ PLT+ VPLQ GNE ALTQY ME LE +GLLKMDFLGLR L+II+ ++ Sbjct: 504 STHAAGVVISREPLTNYVPLQTGNEGLALTQYPMEILEEVGLLKMDFLGLRNLTIIQETL 563 Query: 122 NWITEMTGSTPDFRTIPDDDPLTYEMLGAGETTGVFQMESAGIRRVLKDMKPSGFEDIIS 181 + E G + D +P DD T+ ML GETTG+FQ+ES+G+R VL+D+KPS +DII+ Sbjct: 564 RHLQEQ-GISLDLDKLPTDDEKTFRMLSRGETTGIFQLESSGMRNVLRDLKPSSLDDIIA 622 Query: 182 VVALYRPGPMEFIPKYIAGKHGQIEVEYPHDDLKQILDDTYGIIVYQEQIMQIASLMAGF 241 V+ALYRPGPME IP+YIA KHG +V+Y H L+ IL +T+G ++YQEQIMQI+S +AGF Sbjct: 623 VLALYRPGPMEIIPQYIAAKHGTSKVQYAHPVLEPILRETHGFMIYQEQIMQISSTLAGF 682 Query: 242 SLGEADLLRRAVSKKKRETLDKERGHFVQGSLQQGYTETDANAVYDMIVRFANYGFPRAH 301 SLGEAD+LRRAV KKKRE L ++R FV G ++QGY + N VYD+IVRFA+YGF +AH Sbjct: 683 SLGEADILRRAVGKKKRELLAEQREKFVAGCVRQGYGDELGNQVYDLIVRFADYGFNKAH 742 Query: 302 AAAYGVLAFQTAYLKAHYPVQFMAAMLTAVMGTHRKVAEYVLECRRSGIGVLPPDVNESG 361 + AY ++A+Q AYLKA YP+ FMAA+L+ +G+ ++AEY E RR + VL PDVN+S Sbjct: 743 SVAYAIIAYQMAYLKATYPLAFMAALLSLSIGSQTRIAEYTEEARRLQLTVLGPDVNKSL 802 Query: 362 VLFTPVPGEGMGAIRFGLAAVKNVGTLAVENIIEVRKERPFDSLLDFCRRVDLRICNKRV 421 FT AIRFGLAAVKNVG A+E+I++ RK RP+ + DFC RVD R+ N+RV Sbjct: 803 AFFTV----EQDAIRFGLAAVKNVGYGAIESIVKERKGRPYRDVFDFCARVDARLVNRRV 858 Query: 422 VESLLQAGAFDQLPGHRAQLLAMLDETVDAALKWRKERDELQIQLF-DDLIETPNWE-IR 479 VESL GA D LPGHR QLL +LDE V A R ERD Q+ LF + P E Sbjct: 859 VESLTLCGALDSLPGHRNQLLLLLDEAVGKANNKRIERDANQLNLFAGEEDAAPLREPAE 918 Query: 480 YPDIPGFTVTQQXXXXXXXXXXXXSGHPLDDAAALLEEPGLQRLMDLGEAADESQAVTAG 539 YP++P + TQQ SGHPLD A + P + + LG+ + G Sbjct: 919 YPEVPPLSHTQQLKEERDLIGVYISGHPLDQFAHVASRPEVTVISSLGDVPRDKTVKVFG 978 Query: 540 MVVSVKEITTKAGKAMAFVEWEDQIERCEVVLFPEVWKRSRTLIVKGALLALRAKVQQED 599 M+ + I TK G MAF+ ED+ E+V+FP+V+ + L+ + ++ A+V ++ Sbjct: 979 MITEARRIQTKKGDPMAFITLEDKTAPVELVVFPQVYAKYAQLLEREQIIVAEARVDHQE 1038 Query: 600 EGFKLLAEEV 609 + KLLA V Sbjct: 1039 DMVKLLASRV 1048 >B2A6D4.1 B2A6D4_NATTJ DNA polymerase III catalytic subunit, DnaE type EC=2.7.7.7 Length = 1134 Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust. Identities = 298/615 (48%), Positives = 408/615 (66%), Gaps = 7/615 (1%) Query: 1 VLNLPYNEVDKAAKLIPGQLGISITRALEGTPELKALYDGNPKIKGLLDMAMKVEGMPRH 60 V+ + Y +VD+ AK+IP G++I +ALE + K LYD +P+++ L++++ +EG+PRH Sbjct: 445 VMGMNYGDVDRVAKMIPHDPGMTIDKALELNKDFKKLYDEDPQVRELINISKSIEGLPRH 504 Query: 61 ASTHAAGVVISKGPLTDAVPLQAGNESTALTQYSMEHLESIGLLKMDFLGLRTLSIIERS 120 AS HAAG+VISK PLT+ VPLQ N+ +TQ+ M LE +GLLKMDFLGL+TL+++ R+ Sbjct: 505 ASIHAAGIVISKAPLTEYVPLQC-NDDQVVTQFPMGTLEELGLLKMDFLGLKTLTMMNRA 563 Query: 121 MNWITEMTGSTPDFRTIPDDDPLTYEMLGAGETTGVFQMESAGIRRVLKDMKPSGFEDII 180 + + + T D IP DD T+ ++ G T GVFQ+ES+G+R VL+D+KP+ FEDII Sbjct: 564 VEIVNQTQAETVDLNKIPLDDEQTFRLIREGNTLGVFQLESSGMRGVLRDLKPTSFEDII 623 Query: 181 SVVALYRPGPMEFIPKYIAGKHGQIEVEYPHDDLKQILDDTYGIIVYQEQIMQIASLMAG 240 + ALYRPGPME IP +I KHGQ E+ YPH+DLK IL++TYGIIVYQEQIMQ+AS MAG Sbjct: 624 ATSALYRPGPMEQIPTFIESKHGQREISYPHEDLKPILEETYGIIVYQEQIMQVASTMAG 683 Query: 241 FSLGEADLLRRAVSKKKRETLDKERGHFVQGSLQQGYTETDANAVYDMIVRFANYGFPRA 300 FSLGEADLLRRA+ KKK+ L +++ FVQG + +GY + VYD+IV+FA+YGF ++ Sbjct: 684 FSLGEADLLRRAIGKKKKNILAEQKEKFVQGCINRGYGKETGEHVYDLIVKFADYGFNKS 743 Query: 301 HAAAYGVLAFQTAYLKAHYPVQFMAAMLTAVMGTHRKVAEYVLECRRSGIGVLPPDVNES 360 H+AAY +A+Q+AYLKA+YP QFMAA+LT M K+A Y+ R GI +LPPDVNES Sbjct: 744 HSAAYAYIAYQSAYLKANYPTQFMAALLTNSMNDTDKLALYIDNAREMGIEILPPDVNES 803 Query: 361 GVLFTPVPGEGMGAIRFGLAAVKNVGTLAVENII-EVRKERPFDSLLDFCRRVDLRICNK 419 V FT V IRFGLAAVKNVG AVE II RKE F SL DFC R DLR CNK Sbjct: 804 LVDFTAVSD---FRIRFGLAAVKNVGRGAVEEIITRRRKEGGFTSLDDFCSRTDLRACNK 860 Query: 420 RVVESLLQAGAFDQLPGHRAQLLAMLDETVDAALKWRKERDELQIQLFDDLIETPN-WEI 478 + +ESL++ GAFD +R Q+L +LDE V A + + Q+ +F+ + + N ++ Sbjct: 861 KAIESLIKVGAFDAFEHNRKQMLQVLDEAVKKAQAFTSGSVKGQVTMFEIVSDGTNKIDL 920 Query: 479 RYPDIPGFTVTQQXXXXXXXXXXXXSGHPLDDAAALLEEPGLQRLMDLGEAADESQAVTA 538 YPD+ FT+ + SGHPLD+ L L +L + + + A Sbjct: 921 DYPDVEEFTLNELLQMEKELLGFFVSGHPLDNYKEKLANIDTSSLAELNQIKEGFRIKVA 980 Query: 539 GMVVSVKEITTKAGKAMAFVEWEDQIERCEVVLFPEVWKRSRTLIVKGALLALRAKVQQE 598 G+ VKEI TK G+ MAF EDQ E+V+FP+ + + R LI+ GA + + KV + Sbjct: 981 GICQDVKEIITKKGEQMAFCTLEDQSGTVELVIFPDQYSKGRQLILDGAPVLITGKVDYK 1040 Query: 599 DEG-FKLLAEEVAPL 612 +EG K+L E++ L Sbjct: 1041 EEGETKILVEKLLAL 1055 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,694,468,543 Number of extensions: 150614615 Number of successful extensions: 360470 Number of sequences better than 1.0e-05: 2124 Number of HSP's gapped: 350851 Number of HSP's successfully gapped: 2164 Length of query: 656 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 514 Effective length of database: 1,722,912,073 Effective search space: 885576805522 Effective search space used: 885576805522 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 135 (56.6 bits)