BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0377.0030.p (251 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKK9.1 B3KKK9_9BACI Putative uncharacterized protein 372 e-101 C2VIL2.1 C2VIL2_BACCE 4-Hydroxy-2-oxoglutarate aldolase / 2-dehy... 370 e-101 C2U485.1 C2U485_BACCE 4-Hydroxy-2-oxoglutarate aldolase / 2-dehy... 369 e-100 C3FRX5.1 C3FRX5_BACTB 4-Hydroxy-2-oxoglutarate aldolase / 2-dehy... 369 e-100 C3G9T3.1 C3G9T3_BACTU 4-Hydroxy-2-oxoglutarate aldolase / 2-dehy... 368 e-100 >B3KKK9.1 B3KKK9_9BACI Putative uncharacterized protein Length = 251 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 181/251 (72%), Positives = 210/251 (83%) Query: 1 MSQIQQRLYRNRAALNVLAGSMENARDVFAAAEGHVLVGVLSKNYXXXXXXXXXXXXYGQ 60 M+ +++RLYRNRAALNVLAGS++NA+++F A+EGHVLVGVLSKNY YG Sbjct: 1 MANMEKRLYRNRAALNVLAGSIQNAKEIFEASEGHVLVGVLSKNYPNAQEAVIAMKEYGA 60 Query: 61 DIQDAVSIGLGAGDNRQAAVVAEIAKSYPGSHINQVFPAVGATRANLGAWDSWINSLVSP 120 I+DAVSIGLGAGDNRQAAVVAEI KSYPG+HINQVFPAVGATRANLG +SWINSLVSP Sbjct: 61 VIEDAVSIGLGAGDNRQAAVVAEIVKSYPGTHINQVFPAVGATRANLGVEESWINSLVSP 120 Query: 121 CGQAGFVNISTGPVSSGITPQAIVPVEAAIALVRDMGGNALKYFPMQGLKLEEEYRAVAT 180 GQ G+VNISTGPVS+ + +A+VPV++AIALVRDMGGNALKYFPMQGLKLEEEYRAVA Sbjct: 121 SGQVGYVNISTGPVSAAGSDKAVVPVKSAIALVRDMGGNALKYFPMQGLKLEEEYRAVAK 180 Query: 181 ACGEAGFALEPTGGIDMDNFGPILEIALQAGVPQVIPHVYSSIIDAGTGHTNVQDVRRLL 240 AC E GFALEPTGGID +NF I+ IA +AGV QVIPHVYSSIID+ +G T + DV+ L Sbjct: 181 ACAEEGFALEPTGGIDKENFEAIVRIAFEAGVQQVIPHVYSSIIDSASGDTIISDVQELH 240 Query: 241 GIMKSLVDQYA 251 +K+LVDQYA Sbjct: 241 LKLKALVDQYA 251 >C2VIL2.1 C2VIL2_BACCE 4-Hydroxy-2-oxoglutarate aldolase / 2-dehydro-3-deoxyphosphogluconate aldolase Length = 251 Score = 370 bits (951), Expect = e-101, Method: Compositional matrix adjust. Identities = 176/251 (70%), Positives = 206/251 (82%) Query: 1 MSQIQQRLYRNRAALNVLAGSMENARDVFAAAEGHVLVGVLSKNYXXXXXXXXXXXXYGQ 60 M+ IQ+R Y+ R ALNVLA ++ENA+D+F AAEG+V+VGVLSK+Y YG+ Sbjct: 1 MTNIQKRFYKGRVALNVLANNIENAKDIFEAAEGYVVVGVLSKDYPTVEEAVTAMKAYGK 60 Query: 61 DIQDAVSIGLGAGDNRQAAVVAEIAKSYPGSHINQVFPAVGATRANLGAWDSWINSLVSP 120 +I+DAVSIGLGAGDNRQAAVVAEIAK YPGSHINQVFP+VGATRANLG DSWINSLVSP Sbjct: 61 EIEDAVSIGLGAGDNRQAAVVAEIAKHYPGSHINQVFPSVGATRANLGKKDSWINSLVSP 120 Query: 121 CGQAGFVNISTGPVSSGITPQAIVPVEAAIALVRDMGGNALKYFPMQGLKLEEEYRAVAT 180 G+ G+VNISTGP+S+ +AIVP++ AIALVRDMGGN+LKYFPM+GL EEEYR VA Sbjct: 121 TGKVGYVNISTGPISAAGEEKAIVPIKTAIALVRDMGGNSLKYFPMKGLAHEEEYRVVAK 180 Query: 181 ACGEAGFALEPTGGIDMDNFGPILEIALQAGVPQVIPHVYSSIIDAGTGHTNVQDVRRLL 240 AC E GFALEPTGGID +NFG I+ IAL+A V QVIPHVYSSIID TG+T V+DVR LL Sbjct: 181 ACAEEGFALEPTGGIDKENFGTIVRIALEANVEQVIPHVYSSIIDKETGNTKVEDVRELL 240 Query: 241 GIMKSLVDQYA 251 ++K LVDQYA Sbjct: 241 AVVKKLVDQYA 251 >C2U485.1 C2U485_BACCE 4-Hydroxy-2-oxoglutarate aldolase / 2-dehydro-3-deoxyphosphogluconate aldolase Length = 251 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 176/251 (70%), Positives = 206/251 (82%) Query: 1 MSQIQQRLYRNRAALNVLAGSMENARDVFAAAEGHVLVGVLSKNYXXXXXXXXXXXXYGQ 60 M+ IQ+R Y+ R ALNVLA ++ENA+D+F AAEG+V+VGVLSK+Y YG+ Sbjct: 1 MTNIQKRFYKGRVALNVLANNIENAKDIFEAAEGYVVVGVLSKDYPTVEEAVAAMKAYGK 60 Query: 61 DIQDAVSIGLGAGDNRQAAVVAEIAKSYPGSHINQVFPAVGATRANLGAWDSWINSLVSP 120 +I+DAVSIGLGAGDNRQAAVVAEIAK YPGSHINQVFP+VGATRANLG DSWINSLVSP Sbjct: 61 EIEDAVSIGLGAGDNRQAAVVAEIAKHYPGSHINQVFPSVGATRANLGEKDSWINSLVSP 120 Query: 121 CGQAGFVNISTGPVSSGITPQAIVPVEAAIALVRDMGGNALKYFPMQGLKLEEEYRAVAT 180 G+ G+VNISTGP+S+ +AIVP++ AIALVRDMGGN+LKYFPM+GL EEEYRAVA Sbjct: 121 TGKVGYVNISTGPISAAGEEKAIVPIKTAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAK 180 Query: 181 ACGEAGFALEPTGGIDMDNFGPILEIALQAGVPQVIPHVYSSIIDAGTGHTNVQDVRRLL 240 AC E GFALEPTGGID +NF I+ IAL+A V QVIPHVYSSIID TG+T V+DVR LL Sbjct: 181 ACAEEGFALEPTGGIDKENFETIVRIALEANVEQVIPHVYSSIIDKETGNTKVEDVRELL 240 Query: 241 GIMKSLVDQYA 251 ++K LVDQYA Sbjct: 241 AVVKKLVDQYA 251 >C3FRX5.1 C3FRX5_BACTB 4-Hydroxy-2-oxoglutarate aldolase / 2-dehydro-3-deoxyphosphogluconate aldolase Length = 251 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 176/251 (70%), Positives = 205/251 (81%) Query: 1 MSQIQQRLYRNRAALNVLAGSMENARDVFAAAEGHVLVGVLSKNYXXXXXXXXXXXXYGQ 60 M+ IQ+R Y+ R ALNVLA ++ENA+D+F AAEG+V+VGVLSK+Y YG+ Sbjct: 1 MTNIQKRFYKGRVALNVLANNIENAKDIFEAAEGYVVVGVLSKDYPTVEEAVTAMKAYGK 60 Query: 61 DIQDAVSIGLGAGDNRQAAVVAEIAKSYPGSHINQVFPAVGATRANLGAWDSWINSLVSP 120 +I DAVSIGLGAGDNRQAAVVAEIAK YPGSHINQVFP+VGATRANLG DSWINSLVSP Sbjct: 61 EIDDAVSIGLGAGDNRQAAVVAEIAKHYPGSHINQVFPSVGATRANLGEKDSWINSLVSP 120 Query: 121 CGQAGFVNISTGPVSSGITPQAIVPVEAAIALVRDMGGNALKYFPMQGLKLEEEYRAVAT 180 G+ G+VNISTGP+S+ +AIVP++ AIALVRDMGGN+LKYFPM+GL EEEYRAVA Sbjct: 121 TGKVGYVNISTGPISAAGEEKAIVPIKTAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAK 180 Query: 181 ACGEAGFALEPTGGIDMDNFGPILEIALQAGVPQVIPHVYSSIIDAGTGHTNVQDVRRLL 240 AC E GFALEPTGGID +NF I+ IAL+A V QVIPHVYSSIID TG+T V+DVR LL Sbjct: 181 ACAEEGFALEPTGGIDKENFETIVRIALEANVEQVIPHVYSSIIDKETGNTKVEDVRELL 240 Query: 241 GIMKSLVDQYA 251 ++K LVDQYA Sbjct: 241 AVVKKLVDQYA 251 >C3G9T3.1 C3G9T3_BACTU 4-Hydroxy-2-oxoglutarate aldolase / 2-dehydro-3-deoxyphosphogluconate aldolase Length = 251 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 176/251 (70%), Positives = 204/251 (81%) Query: 1 MSQIQQRLYRNRAALNVLAGSMENARDVFAAAEGHVLVGVLSKNYXXXXXXXXXXXXYGQ 60 M+ IQ+R Y+ R ALNVLA ++ENA+D+F AAEG+V+VGVLSK+Y YG+ Sbjct: 1 MTNIQKRFYKGRVALNVLANNIENAKDIFEAAEGYVVVGVLSKDYPTVEEAVTAMKAYGK 60 Query: 61 DIQDAVSIGLGAGDNRQAAVVAEIAKSYPGSHINQVFPAVGATRANLGAWDSWINSLVSP 120 +I DAVSIGLGAGDNRQAAVVAEIAK YPGSHINQVFP+VGATRANLG DSWINSLVSP Sbjct: 61 EIDDAVSIGLGAGDNRQAAVVAEIAKRYPGSHINQVFPSVGATRANLGGKDSWINSLVSP 120 Query: 121 CGQAGFVNISTGPVSSGITPQAIVPVEAAIALVRDMGGNALKYFPMQGLKLEEEYRAVAT 180 G+ G+VNISTGP+S+ +AIVP++ AIALVRDMGGN+LKYFPM+GL EEEYRAVA Sbjct: 121 TGKVGYVNISTGPISAAGEEKAIVPIKTAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAK 180 Query: 181 ACGEAGFALEPTGGIDMDNFGPILEIALQAGVPQVIPHVYSSIIDAGTGHTNVQDVRRLL 240 AC E GFALEPTGGID +NF IL IAL+A V QVIPHVYSSIID TG+T +DVR LL Sbjct: 181 ACAEEGFALEPTGGIDKENFETILRIALEANVEQVIPHVYSSIIDKETGNTKTEDVRELL 240 Query: 241 GIMKSLVDQYA 251 ++K LVDQYA Sbjct: 241 AVVKKLVDQYA 251 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.134 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,412,239,673 Number of extensions: 57202814 Number of successful extensions: 135462 Number of sequences better than 1.0e-05: 198 Number of HSP's gapped: 135191 Number of HSP's successfully gapped: 199 Length of query: 251 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 119 Effective length of database: 1,817,122,223 Effective search space: 216237544537 Effective search space used: 216237544537 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)