BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0377.0029.p (347 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKL0.1 B3KKL0_9BACI Pyridoxal phosphate-dependent enzyme 539 e-151 B1DHH1.1 B1DHH1_9BACL Pyridoxal phosphate-dependent enzyme 537 e-151 B3YR49.1 B3YR49_BACCE Putative pyridoxal phosphate-dependent enzyme 513 e-143 C2ZW19.1 C2ZW19_BACCE L-seryl-tRNA(Sec) selenium transferase 512 e-143 C2ZEG8.1 C2ZEG8_BACCE L-seryl-tRNA(Sec) selenium transferase 512 e-143 >B3KKL0.1 B3KKL0_9BACI Pyridoxal phosphate-dependent enzyme Length = 367 Score = 539 bits (1388), Expect = e-151, Method: Compositional matrix adjust. Identities = 268/347 (77%), Positives = 295/347 (85%) Query: 1 MSILGVSAPTDTVMEAMKQGGQQYVEIADLVDKSGDYIARLLGSEXXXXXXXXXXGIALS 60 MSILGVSAPTDTVMEAM+ GGQ YVEIADLVDK+GDY+AR+LGSE GIALS Sbjct: 21 MSILGVSAPTDTVMEAMRIGGQSYVEIADLVDKAGDYMARILGSEAAVVVNSASSGIALS 80 Query: 61 VAAIVTGGDPRLSLRLHQEPVLKNEIIMLKGHNVQYGAPVETMVFLGGGRVVEAGYANEG 120 VA IVT G+ R S RLHQEP+ KNEIIM KGHNVQYGAPVETMV+LGGG+VVE GYANEG Sbjct: 81 VAGIVTEGNRRRSDRLHQEPIAKNEIIMFKGHNVQYGAPVETMVYLGGGKVVEVGYANEG 140 Query: 121 RKEHIEQAICERTAAILYVKSHHTVQKNMISVEEAWEVAARSGVPLIVDAAAEEDLLKYV 180 RKEHI +AI ERTAAILYVKSHH VQKNMISVEEA EVA G+PLIVDAAAEED+ KYV Sbjct: 141 RKEHIAEAINERTAAILYVKSHHCVQKNMISVEEAAEVAQAHGIPLIVDAAAEEDIQKYV 200 Query: 181 QYSDLAIYSGSKAIEGPTSGIVAGKRKYVEWVKVQLHGIGRSMKVGKETTFGLLQALEEY 240 +Y DLAIYSGSKAIEGPTSGIV GKR+YVEWVK QLHGIGRSMKVGKETTFGLLQAL+EY Sbjct: 201 KYGDLAIYSGSKAIEGPTSGIVGGKRQYVEWVKAQLHGIGRSMKVGKETTFGLLQALDEY 260 Query: 241 QDKPDNSEVEKKALEALQPLGTLHGVSVRIVQDEAGRAIFRGRIQIDAAAAGVDAKTVND 300 K D SE+EK ALE ++ L L G+ V IVQDEAGRAIFRGR++++ AAGV AK++ND Sbjct: 261 MVKEDKSELEKAALEEMKSLSKLPGIEVTIVQDEAGRAIFRGRVKVNEEAAGVSAKSMND 320 Query: 301 QLREGEIAVYTRDYGVKQGYFDIDPRSLQGDDLQVIIDRIHEIVEGK 347 QLREG+IAVYTRDYGV+QGYFDIDPRSL GDDLQVII RI +I G Sbjct: 321 QLREGDIAVYTRDYGVRQGYFDIDPRSLSGDDLQVIITRIQQIAGGN 367 >B1DHH1.1 B1DHH1_9BACL Pyridoxal phosphate-dependent enzyme Length = 370 Score = 537 bits (1384), Expect = e-151, Method: Compositional matrix adjust. Identities = 264/347 (76%), Positives = 293/347 (84%) Query: 1 MSILGVSAPTDTVMEAMKQGGQQYVEIADLVDKSGDYIARLLGSEXXXXXXXXXXGIALS 60 MSILGVSAPTD+VMEAMK GGQ YVEIADLVDK+GDYIA ++GSE GIALS Sbjct: 21 MSILGVSAPTDSVMEAMKHGGQSYVEIADLVDKAGDYIAGIIGSEAAVIVNSASSGIALS 80 Query: 61 VAAIVTGGDPRLSLRLHQEPVLKNEIIMLKGHNVQYGAPVETMVFLGGGRVVEAGYANEG 120 V +VT G RL+ +LHQEP+ +NEII+LKGHNVQYGAPVETMV+LGGGR+VE GYANEG Sbjct: 81 VGGVVTKGSRRLTEKLHQEPIQQNEIIILKGHNVQYGAPVETMVYLGGGRLVEVGYANEG 140 Query: 121 RKEHIEQAICERTAAILYVKSHHTVQKNMISVEEAWEVAARSGVPLIVDAAAEEDLLKYV 180 + EHIE+AI ERTAAILYVKSHH VQKNMISVEEAWEVA R GVP+IVDAAAEEDL KYV Sbjct: 141 KAEHIEEAINERTAAILYVKSHHAVQKNMISVEEAWEVAQRRGVPMIVDAAAEEDLRKYV 200 Query: 181 QYSDLAIYSGSKAIEGPTSGIVAGKRKYVEWVKVQLHGIGRSMKVGKETTFGLLQALEEY 240 QYSDLA+YSGSKAIEGPTSGIV GKR Y+EWVK+QLHGIGRSMKVGKET+FGLLQAL+EY Sbjct: 201 QYSDLAVYSGSKAIEGPTSGIVGGKRTYIEWVKMQLHGIGRSMKVGKETSFGLLQALDEY 260 Query: 241 QDKPDNSEVEKKALEALQPLGTLHGVSVRIVQDEAGRAIFRGRIQIDAAAAGVDAKTVND 300 +DKPDNSE EK AL L PL L G+ V IVQDEAGRAIFR RI ID+A +G+ AK VND Sbjct: 261 RDKPDNSEREKAALNKLLPLSELPGIKVTIVQDEAGRAIFRARIHIDSALSGITAKAVND 320 Query: 301 QLREGEIAVYTRDYGVKQGYFDIDPRSLQGDDLQVIIDRIHEIVEGK 347 LREG IA+YTRDYGVKQGYFDIDPR L GDD+ VI RI E+ G+ Sbjct: 321 GLREGGIAIYTRDYGVKQGYFDIDPRPLMGDDMDVIEARIRELAGGR 367 >B3YR49.1 B3YR49_BACCE Putative pyridoxal phosphate-dependent enzyme Length = 369 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 256/347 (73%), Positives = 288/347 (82%) Query: 1 MSILGVSAPTDTVMEAMKQGGQQYVEIADLVDKSGDYIARLLGSEXXXXXXXXXXGIALS 60 MSILGVSAPTDTVM+AMK GGQ YVEIADLVDK+GD+IAR+L SE GIALS Sbjct: 21 MSILGVSAPTDTVMDAMKHGGQNYVEIADLVDKAGDHIARILDSEAAVVVNSASSGIALS 80 Query: 61 VAAIVTGGDPRLSLRLHQEPVLKNEIIMLKGHNVQYGAPVETMVFLGGGRVVEAGYANEG 120 +AAIVT G+ R S RLHQE + KNE+IMLKGHNVQYGAPVETM++LGGG++VE GYANEG Sbjct: 81 IAAIVTEGNRRKSERLHQEVIAKNEVIMLKGHNVQYGAPVETMIYLGGGKLVEVGYANEG 140 Query: 121 RKEHIEQAICERTAAILYVKSHHTVQKNMISVEEAWEVAARSGVPLIVDAAAEEDLLKYV 180 + EHIE AI E TAAILYVKSHH VQKNMISVEEAWEVA R+ VPLIVDAAAEED+ KYV Sbjct: 141 KAEHIEDAIGENTAAILYVKSHHAVQKNMISVEEAWEVAQRNNVPLIVDAAAEEDIQKYV 200 Query: 181 QYSDLAIYSGSKAIEGPTSGIVAGKRKYVEWVKVQLHGIGRSMKVGKETTFGLLQALEEY 240 +Y+DLAIYSGSKAIEGPTSGIV GKRKY+EW+KVQLH IGRSMKVGKETTFGLLQAL+EY Sbjct: 201 KYADLAIYSGSKAIEGPTSGIVGGKRKYIEWLKVQLHCIGRSMKVGKETTFGLLQALDEY 260 Query: 241 QDKPDNSEVEKKALEALQPLGTLHGVSVRIVQDEAGRAIFRGRIQIDAAAAGVDAKTVND 300 K D SE EK+ L+ L PL L+GV+V IVQDEAGRAIFR RI I+ AK V Sbjct: 261 GVKEDKSEQEKELLQVLMPLKELNGVNVTIVQDEAGRAIFRARIHINEEELNKSAKDVVT 320 Query: 301 QLREGEIAVYTRDYGVKQGYFDIDPRSLQGDDLQVIIDRIHEIVEGK 347 LREGEIA+YTRDYGV+QG+FDIDPR LQGDD+ VI +++ EIV GK Sbjct: 321 ALREGEIAIYTRDYGVRQGFFDIDPRPLQGDDIHVIEEKLREIVGGK 367 >C2ZW19.1 C2ZW19_BACCE L-seryl-tRNA(Sec) selenium transferase Length = 354 Score = 512 bits (1318), Expect = e-143, Method: Compositional matrix adjust. Identities = 255/347 (73%), Positives = 288/347 (82%) Query: 1 MSILGVSAPTDTVMEAMKQGGQQYVEIADLVDKSGDYIARLLGSEXXXXXXXXXXGIALS 60 MSILGVSAPTDTVM+AMK GGQ YVEIADLVDK+GD+IAR+L SE GIALS Sbjct: 8 MSILGVSAPTDTVMDAMKHGGQNYVEIADLVDKAGDHIARILDSEAAVVVNSASSGIALS 67 Query: 61 VAAIVTGGDPRLSLRLHQEPVLKNEIIMLKGHNVQYGAPVETMVFLGGGRVVEAGYANEG 120 +A IVT G+ R S RLHQE ++KNE+IMLKGHNVQYGAPVETM++LGGG++VE GYANEG Sbjct: 68 IAGIVTEGNRRKSERLHQEVIVKNEVIMLKGHNVQYGAPVETMIYLGGGKLVEVGYANEG 127 Query: 121 RKEHIEQAICERTAAILYVKSHHTVQKNMISVEEAWEVAARSGVPLIVDAAAEEDLLKYV 180 + EHIE AI E TAAILYVKSHH VQKNMISVEEAWEVA R+ VPLIVDAAAEED+ KYV Sbjct: 128 KAEHIEDAIGENTAAILYVKSHHAVQKNMISVEEAWEVAQRNNVPLIVDAAAEEDIQKYV 187 Query: 181 QYSDLAIYSGSKAIEGPTSGIVAGKRKYVEWVKVQLHGIGRSMKVGKETTFGLLQALEEY 240 +YSDLAIYSGSKAIEGPTSGIV GKRKY+EW+KVQLH IGRSMKVGKETTFGLLQAL+EY Sbjct: 188 KYSDLAIYSGSKAIEGPTSGIVGGKRKYIEWLKVQLHCIGRSMKVGKETTFGLLQALDEY 247 Query: 241 QDKPDNSEVEKKALEALQPLGTLHGVSVRIVQDEAGRAIFRGRIQIDAAAAGVDAKTVND 300 K D SE EK+ L+ L PL L+GV+V IVQDEAGRAIFR RI I+ AK V + Sbjct: 248 GVKEDKSEQEKELLQVLMPLKELNGVNVTIVQDEAGRAIFRARIHINENELNKSAKDVVN 307 Query: 301 QLREGEIAVYTRDYGVKQGYFDIDPRSLQGDDLQVIIDRIHEIVEGK 347 LREGEIA+YTRDYGV+QG+FDIDPR LQGDD+ VI +++ EIV G Sbjct: 308 ALREGEIAIYTRDYGVRQGFFDIDPRPLQGDDIHVIEEKMREIVGGN 354 >C2ZEG8.1 C2ZEG8_BACCE L-seryl-tRNA(Sec) selenium transferase Length = 354 Score = 512 bits (1318), Expect = e-143, Method: Compositional matrix adjust. Identities = 255/347 (73%), Positives = 288/347 (82%) Query: 1 MSILGVSAPTDTVMEAMKQGGQQYVEIADLVDKSGDYIARLLGSEXXXXXXXXXXGIALS 60 MSILGVSAPTDTVM+AMK GGQ YVEIADLVDK+GD+IAR+L SE GIALS Sbjct: 8 MSILGVSAPTDTVMDAMKHGGQNYVEIADLVDKAGDHIARILDSEAAVVVNSASSGIALS 67 Query: 61 VAAIVTGGDPRLSLRLHQEPVLKNEIIMLKGHNVQYGAPVETMVFLGGGRVVEAGYANEG 120 +A IVT G+ R S RLHQE ++KNE+IMLKGHNVQYGAPVETM++LGGG++VE GYANEG Sbjct: 68 IAGIVTEGNRRKSERLHQEVIVKNEVIMLKGHNVQYGAPVETMIYLGGGKLVEVGYANEG 127 Query: 121 RKEHIEQAICERTAAILYVKSHHTVQKNMISVEEAWEVAARSGVPLIVDAAAEEDLLKYV 180 + EHIE AI E TAAILYVKSHH VQKNMISVEEAWEVA R+ VPLIVDAAAEED+ KYV Sbjct: 128 KAEHIEDAIGENTAAILYVKSHHAVQKNMISVEEAWEVAQRNNVPLIVDAAAEEDIQKYV 187 Query: 181 QYSDLAIYSGSKAIEGPTSGIVAGKRKYVEWVKVQLHGIGRSMKVGKETTFGLLQALEEY 240 +YSDLAIYSGSKAIEGPTSGIV GKRKY+EW+KVQLH IGRSMKVGKETTFGLLQAL+EY Sbjct: 188 KYSDLAIYSGSKAIEGPTSGIVGGKRKYIEWLKVQLHCIGRSMKVGKETTFGLLQALDEY 247 Query: 241 QDKPDNSEVEKKALEALQPLGTLHGVSVRIVQDEAGRAIFRGRIQIDAAAAGVDAKTVND 300 K D SE EK+ L+ L PL L+GV+V IVQDEAGRAIFR RI I+ AK V + Sbjct: 248 GVKEDKSEQEKELLQVLMPLKELNGVNVTIVQDEAGRAIFRARIHINENELNKSAKDVVN 307 Query: 301 QLREGEIAVYTRDYGVKQGYFDIDPRSLQGDDLQVIIDRIHEIVEGK 347 LREGEIA+YTRDYGV+QG+FDIDPR LQGDD+ VI +++ EIV G Sbjct: 308 ALREGEIAIYTRDYGVRQGFFDIDPRPLQGDDIHVIEEKMREIVGGN 354 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.135 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,970,223,510 Number of extensions: 78517974 Number of successful extensions: 213655 Number of sequences better than 1.0e-05: 363 Number of HSP's gapped: 213538 Number of HSP's successfully gapped: 364 Length of query: 347 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 211 Effective length of database: 1,779,438,163 Effective search space: 375461452393 Effective search space used: 375461452393 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)