BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0377.0023.p (543 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KHA0.1 B3KHA0_9BACI Extracellular solute-binding protein family 1 885 0.0 B3K7Z2.1 B3K7Z2_9BACI Extracellular solute-binding protein family 1 630 e-179 B1D743.1 B1D743_9BACL Extracellular solute-binding protein family 1 609 e-172 B3K9I6.1 B3K9I6_9BACI Extracellular solute-binding protein family 1 289 5e-76 B1D5I3.1 B1D5I3_9BACL Extracellular solute-binding protein family 1 275 8e-72 >B3KHA0.1 B3KHA0_9BACI Extracellular solute-binding protein family 1 Length = 538 Score = 885 bits (2287), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/541 (77%), Positives = 472/541 (87%), Gaps = 4/541 (0%) Query: 3 KTTRKPWKXXXXXXXXXXXXAGCGSSNEGEAXXXXXXXXXXXXXXXXXEGFPIVTEPVTL 62 K T KPWK AGCGS+ + ++ EGFPI+ EP+TL Sbjct: 2 KMTSKPWKLVLTGLTALSLLAGCGSAGDTKSAGTKSTEAAAVNK----EGFPIMNEPITL 57 Query: 63 TMMAPDVGIQNWENMPVLQQMQEMTGITLEYQNAPKDSFETKKNLVFASGDYPDIFYAAG 122 TMMAPDVG+QNW++M VLQQM+E TGI+ Y NAPKDSF+TKKNLVFASGDYPD+FYAAG Sbjct: 58 TMMAPDVGVQNWKDMVVLQQMEEKTGISFRYLNAPKDSFDTKKNLVFASGDYPDVFYAAG 117 Query: 123 LTTAEQMNYGEQGILIPLEDLIDEYAPNFKALLEDNPDVRKSITAPDGHIYSLPVVELSQ 182 LT AEQMNYGEQGILIPLE+LI+EYAPNFKAL+++ P++RKSITAPDGHIYSLP V+LSQ Sbjct: 118 LTAAEQMNYGEQGILIPLEELIEEYAPNFKALMDEIPEIRKSITAPDGHIYSLPAVDLSQ 177 Query: 183 HWYRNPMWYNGDFLKALNIDKLPETTEELYTYLKRVKEEDPNGNGVADEIPISSVTTAAA 242 HWYRNP+WYNGDFL+ALNIDKLPETTEELYT+LKRVKEEDPNGNGVADEIPISSV+TA Sbjct: 178 HWYRNPLWYNGDFLEALNIDKLPETTEELYTFLKRVKEEDPNGNGVADEIPISSVSTATT 237 Query: 243 NLRDIRTWLLGAFGIYEEEIYVDDADKVHYTPLEEGYKEYLTYMNRLWSEELLDHESFSQ 302 N RDIRTWLLGAFG+YE+EIYVDD D VHYTP+EEG++EYL YMNRLW E+LLDHES+SQ Sbjct: 238 NARDIRTWLLGAFGVYEDEIYVDDEDVVHYTPIEEGFREYLVYMNRLWKEDLLDHESYSQ 297 Query: 303 TAEQKKAKAQNNRVALFSDWHAYMTKGGEQSTADPMFAPVRSESVAAPAIAKNRGITTGA 362 TAEQKKAKAQNN+VALFSDWHAYMTKGGE ST DPMFAPV+S+ V PAIAKNRGITTGA Sbjct: 298 TAEQKKAKAQNNQVALFSDWHAYMTKGGEPSTKDPMFAPVKSDLVDKPAIAKNRGITTGA 357 Query: 363 FAITESNPQPEASMRWVDYLYSYEGALFFNKGPEGTLWEYTDKENRVKQYLPVPDGKEME 422 FAI+ +NP PEASMRWVDYLYSYEG+LFFNKGPEG LWEYTD+ NRVK+YL VPDG EME Sbjct: 358 FAISATNPAPEASMRWVDYLYSYEGSLFFNKGPEGMLWEYTDEANRVKRYLSVPDGMEME 417 Query: 423 DFRATLTPNYGIPAPTLSMDDINKGLKTDFDLWVEQETKQKLLDKGARIPFPALFLTVEE 482 D+RATLTPNYGIPAPT++ DDINKGLKTDFD WVE+ETK+KLLD+GAR PFPALFLTVEE Sbjct: 418 DYRATLTPNYGIPAPTINTDDINKGLKTDFDQWVEKETKEKLLDRGARPPFPALFLTVEE 477 Query: 483 QTEISSLNSDLSTYVKQMEAKFITGAEPLTGWDNYVATVKKMGGERVAEINQAAYDRWKS 542 QTEI+SLNSDLSTYV+QMEAKF+TGAEPL+ WDNY+ T+KKMG +RV EI Q AYDRWKS Sbjct: 478 QTEINSLNSDLSTYVQQMEAKFVTGAEPLSNWDNYLNTMKKMGADRVVEIYQGAYDRWKS 537 Query: 543 N 543 + Sbjct: 538 S 538 >B3K7Z2.1 B3K7Z2_9BACI Extracellular solute-binding protein family 1 Length = 536 Score = 630 bits (1626), Expect = e-179, Method: Compositional matrix adjust. Identities = 302/494 (61%), Positives = 381/494 (77%), Gaps = 9/494 (1%) Query: 51 EGFPIVTEPVTLTMMAPDVGIQNWENMPVLQQMQEMTGITLEYQNAPKDSFETKKNLVFA 110 EGFPIV EP+TLT+M+ D G+ +W MPVLQ+M++++GI LEYQ +P DSFETKKNLVFA Sbjct: 48 EGFPIVDEPITLTVMSQDAGVADWNTMPVLQEMEKLSGIKLEYQLSPIDSFETKKNLVFA 107 Query: 111 SGDYPDIFYAAGLTTAEQMNYGEQGILIPLEDLIDE-YAPNFKALLEDNPDVRKSITAPD 169 SGD PD+FYAA L AEQ+ YG QGILIPLE IDE YAPN K + ++NPDVRKS T PD Sbjct: 108 SGDLPDMFYAADLKPAEQVTYGSQGILIPLEKYIDEGYAPNIKKIFDENPDVRKSFTTPD 167 Query: 170 GHIYSLPVVELSQHWYRNPMWYNGDFLKALNIDKLPETTEELYTYLKRVKEEDPNGNGVA 229 GHIY+LP V+ + WYR PMWYNG FLKALN+ + P+TTEELYT+LKRVKEEDPNGNG Sbjct: 168 GHIYALPFVDKAAVWYRGPMWYNGKFLKALNVSE-PKTTEELYTFLKRVKEEDPNGNGKK 226 Query: 230 DEIPISSVTTAAANLRDIRTWLLGAFGIYEEEIYVDDADKVHYTPLEEGYKEYLTYMNRL 289 DEIP++SV L D+R + G +G+Y E IY D KVHY EEGYK YLT+MNRL Sbjct: 227 DEIPLTSV-----KLDDLRMYFFGFWGMYNEGIYSDKDGKVHYPYQEEGYKGYLTFMNRL 281 Query: 290 WSEELLDHESFSQTAEQKKAKAQNNRVALFSDWHAYMTKGGEQSTADPMFAPVRSESVAA 349 W EELLDHE+FSQT +QKKAK +NN++ALF+D+HAY T GGE S+ P+ PV+SE + Sbjct: 282 WKEELLDHETFSQTGDQKKAKGENNQLALFNDYHAYFTLGGEPSSEHPLMTPVKSEIADS 341 Query: 350 PAIAKNRGITT-GAFAITESNPQPEASMRWVDYLYSYEGALFFNKGPEGTLWEYTDKENR 408 P + G++ G FAI+ SNP PEA+MRW+DYLYSYEGA FN+GPEGTLW++ D+ NR Sbjct: 342 PVYGMHPGMSARGTFAISSSNPAPEATMRWIDYLYSYEGATLFNQGPEGTLWKFKDEANR 401 Query: 409 VKQYLPVPDGKEMEDFRATLTPNYGIPAPTLSMDDINKGLKTDFDLWVEQETKQKLLDKG 468 VK++LPVP G + E++R +TPNYGI P ++ D+ KGL+T+FD W++Q+ ++KL+ G Sbjct: 402 VKEWLPVPGGGDREEYRGKITPNYGILTPGVNDPDVAKGLRTEFDEWIDQQNQEKLVPIG 461 Query: 469 ARIPFPALFLTVEEQTEISSLNSDLSTYVKQMEAKFITGAEPLTGWDNYVATVKKMGGER 528 + PFP ++LT EEQ+E ++L SDL TYVKQMEAKF+TG EPL WD YVA VKKMG +R Sbjct: 462 -KSPFPNVYLTNEEQSEATALLSDLETYVKQMEAKFVTGQEPLENWDKYVAQVKKMGSDR 520 Query: 529 VAEINQAAYDRWKS 542 + E+ Q AYDRW + Sbjct: 521 LVELYQGAYDRWNA 534 >B1D743.1 B1D743_9BACL Extracellular solute-binding protein family 1 Length = 545 Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust. Identities = 283/494 (57%), Positives = 377/494 (76%), Gaps = 8/494 (1%) Query: 51 EGFPIVTEPVTLTMMAPDVGIQNWENMPVLQQMQEMTGITLEYQNAPKDSFETKKNLVFA 110 +GFPIV +P+TL MM+ DVG +W MP L++M+++T I YQ P DSF TKKNLVFA Sbjct: 56 DGFPIVDKPITLKMMSQDVGKADWNTMPALKEMEKLTNIKFTYQLTPLDSFSTKKNLVFA 115 Query: 111 SGDYPDIFYAAGLTTAEQMNYGEQGILIPLEDLIDE-YAPNFKALLEDNPDVRKSITAPD 169 SGD PD+ YA LT AEQ+ YG QG+LIPLE IDE YAPN K + +++PD+RKS T PD Sbjct: 116 SGDLPDVLYAPDLTPAEQVTYGTQGVLIPLEKYIDEGYAPNLKKIFDEHPDIRKSFTTPD 175 Query: 170 GHIYSLPVVELSQHWYRNPMWYNGDFLKALNIDKLPETTEELYTYLKRVKEEDPNGNGVA 229 GH+Y+LP ++LS WYR+PMWYNG FLKALN+ +LP+TTEELY +LKRV++EDPNGNG Sbjct: 176 GHMYALPYIDLSAIWYRSPMWYNGKFLKALNVTELPKTTEELYNFLKRVRDEDPNGNGKK 235 Query: 230 DEIPISSVTTAAANLRDIRTWLLGAFGIYEEEIYVDDADKVHYTPLEEGYKEYLTYMNRL 289 DEIP++SV L D+R + G +G+Y+E++Y D KVHY+P EEGYK YLT++NRL Sbjct: 236 DEIPLTSV-----KLDDLRMFFFGFWGMYDEKVYADKDGKVHYSPQEEGYKGYLTFLNRL 290 Query: 290 WSEELLDHESFSQTAEQKKAKAQNNRVALFSDWHAYMTKGGEQSTADPMFAPVRSESVAA 349 W+E LLDHE+FSQT++QKKAK QNN++A+F+D+ Y T GGE S +P+ PV SE + Sbjct: 291 WNENLLDHETFSQTSDQKKAKGQNNQIAVFNDYFPYFTLGGEPSGDNPLMTPVSSEIAGS 350 Query: 350 PAIAKNRGIT-TGAFAITESNPQPEASMRWVDYLYSYEGALFFNKGPEGTLWEYTDKENR 408 P + GI+ G FAIT +P PEA+MRWVDY YSYEGA N+GPEG LW+Y +K+ Sbjct: 351 PVYGMHPGISANGTFAITSKDPNPEATMRWVDYQYSYEGATLMNQGPEGMLWKYKNKDTH 410 Query: 409 VKQYLPVPDGKEMEDFRATLTPNYGIPAPTLSMDDINKGLKTDFDLWVEQETKQKLLDKG 468 K+++ +P+G+E EDFR TLTPN+GI P + ++++ GL T+FD W+++E+++KL G Sbjct: 411 EKEWVELPNGQEREDFRGTLTPNFGILTPGIKINELTNGLTTEFDNWIQKESEEKLKPIG 470 Query: 469 ARIPFPALFLTVEEQTEISSLNSDLSTYVKQMEAKFITGAEPLTGWDNYVATVKKMGGER 528 + PFP ++LT +EQ+EI+SL SDL TYV+QMEAKF+TG EP++GWD Y+A VKKMGG+R Sbjct: 471 -KAPFPNVYLTNDEQSEITSLLSDLDTYVQQMEAKFVTGQEPMSGWDKYLAQVKKMGGDR 529 Query: 529 VAEINQAAYDRWKS 542 + E+ Q AYDRWKS Sbjct: 530 ITEVYQGAYDRWKS 543 >B3K9I6.1 B3K9I6_9BACI Extracellular solute-binding protein family 1 Length = 542 Score = 289 bits (740), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 198/540 (36%), Positives = 270/540 (50%), Gaps = 44/540 (8%) Query: 24 GCGS-SNEGEAXXXXXXXXXXXXXXXXXEGFPIVTEPVTLTMM---APDVGIQNWENMPV 79 GCGS S EG A G PIV EP+ LT +P G +E V Sbjct: 25 GCGSKSGEGAADKGETPQANFNET-----GMPIVNEPLDLTFFTGKSPTNG-SKFEETLV 78 Query: 80 LQQMQEMTGITLEYQNAPKDSFETKKNLVFASGDYPDIFYAAGLTTAEQMNYGEQGILIP 139 + QEM+ + + + P D+ K+NL A GDYPD+FY+A +++AE YGEQG+ IP Sbjct: 79 WKTYQEMSNVNVTWNLIPFDTLTEKRNLALAGGDYPDVFYSARVSSAELTRYGEQGVFIP 138 Query: 140 LEDLIDEYAPNFKALLEDNPDVRKSITAPDGHIYSLPVV---ELSQHWYRNPMWYNGDFL 196 L DLID+YAPNFK L+E PD+RK +T PDG+IYSLP EL P+W N ++L Sbjct: 139 LNDLIDQYAPNFKKLMEQYPDIRKGLTMPDGNIYSLPSFYDPELLSMLIGTPIWINQEWL 198 Query: 197 KALNIDKLPETTEELYTYLKRVKEEDPNGNGVADEIPISSVTTAAANLRDIRTWLLGAFG 256 L + K P+TTEE Y YLK VKE D NGNG DEIP SS +W LG G Sbjct: 199 DQLGM-KEPQTTEEFYAYLKAVKETDLNGNGQHDEIPFSSTGITGIIDHLKGSWGLGTSG 257 Query: 257 IYEEEIYVD-DADKVHYTPLEEGYKEYLTYMNRLWSEELLDHESFSQTAEQKKAKAQNNR 315 + + + VD D K+ +T YKE L ++N+L E LLD E F+ AK Q Sbjct: 258 LGHKLVDVDPDTGKLRFTKALPEYKEMLQFVNKLHQEGLLDKEIFTIEGGALNAKGQEGL 317 Query: 316 VALFSDWHAYMTKGGEQSTADPMFAPVRSESVAAPAIAKNRG-----------ITTGAFA 364 + G +P R E + A+ G + GAFA Sbjct: 318 L-------------GATIVPNPEMVMGRKEYIGLGALKGPHGDQLYSHVKVPMVHVGAFA 364 Query: 365 ITESNPQPEASMRWVDYLYSYEGALFFNKGPEG-TLWEYTDKE-NRVKQYLPVPDGKEME 422 IT+ NP PEA++RW+DY Y EGA F+ G EG T + D + VK+ P+G + Sbjct: 365 ITDKNPNPEATIRWMDYFYGDEGAQFYFMGKEGETYTKNADGQLEYVKEITENPNGLTQD 424 Query: 423 DFRATLTPNYGIPAPTLSMDDINKGLKTDFDLWVEQETKQKLLDKGARIPFPALFLTVEE 482 A G P + K +T + E + K F T+EE Sbjct: 425 QALAKNFTWLGGSYPGFVREKWFKASETRPNAMAAAEKAEPYAVKEILYNFN---FTLEE 481 Query: 483 QTEISSLNSDLSTYVKQMEAKFITGAEPLTGWDNYVATVKKMGGERVAEINQAAYDRWKS 542 ++S+ D+ YVK+MEAKF+ G+ + W+ YV T+ KMG +R E+ QAAY+R+++ Sbjct: 482 TDVMTSIGKDIEDYVKEMEAKFVNGSASFSQWEEYVNTLNKMGLDRYMEVYQAAYERYQA 541 >B1D5I3.1 B1D5I3_9BACL Extracellular solute-binding protein family 1 Length = 532 Score = 275 bits (703), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 183/524 (34%), Positives = 264/524 (50%), Gaps = 27/524 (5%) Query: 23 AGCGSSNEGEAXXXXXXXXXXXXXXXXXEGFPIVTEPVTLTMMAPDVGIQN-WENMPVLQ 81 G G+SNE EGFPIV P+ L M + +++MPV Q Sbjct: 26 GGNGNSNEKGGNTGDSKSSGSAENAVKTEGFPIVDTPIKLKMFTRVAPVNGPFKDMPVFQ 85 Query: 82 QMQEMTGITLEYQNAPKDSFETKKNLVFASGDYPDIFYAAGLTTAEQMNYGEQGILIPLE 141 ++M+ I +++ AP D F KKNL+FAS + PD Y +GLT E + YG G LIPLE Sbjct: 86 DYEKMSNIKVDFIEAPTDGFAEKKNLLFASNELPDALYRSGLTQLETVRYGSSGQLIPLE 145 Query: 142 DLIDEYAPNFKALLEDNPDVRKSITAPDGHIYSLPVVELSQHWYRNPMWYNGDFLKALNI 201 LID+YAPN K+L++ P++R IT P+GHIY++P + + W N +L L + Sbjct: 146 KLIDQYAPNLKSLMDQYPEIRAGITTPEGHIYAIPGIVTLGSARTDKRWINKAWLDKLGL 205 Query: 202 DKLPETTEELYTYLKRVKEEDPNGNGVADEIPISSVTTAAANLRDIRTWLLGAFGIYEEE 261 K+PETT+ELY LK ++ DPNGNG ADEIP+++ I + GAFG+ + Sbjct: 206 -KVPETTDELYEVLKAFRDGDPNGNGKADEIPMTARIGMP-----IVYQMAGAFGLDSQL 259 Query: 262 IYVDD--ADKVHYTPLEEGYKEYLTYMNRLWSEELLDHESFSQTAEQKKAKAQNNRVALF 319 Y + +DKVH +E YKE L Y+N+L+ E+L+D E FS T Q AK F Sbjct: 260 GYNINVESDKVHIWSGDEQYKELLMYLNKLYKEKLIDPEIFSHTEAQYLAKQGTGNTGYF 319 Query: 320 SDW--HAYMTKGGEQSTADPMFAPV--RSESVAAPAIAKNRGITTGAFAITESNPQPEAS 375 D + ++T + P P R +S AP GAFAIT N PEA+ Sbjct: 320 FDQTNNNFLTIQDQYIGIAPQAGPNGDRLQSQVAPVPRD-----YGAFAITSVNKYPEAT 374 Query: 376 MRWVDYLYSYEGALFFNKGPEGTLWEYTDKENRVKQYLPVPDGKEMEDFRATLTPNYGIP 435 MRW+DY YS EG+ G EG +E D K+ L G + A +TP G Sbjct: 375 MRWIDYFYSDEGSTLLRFGREGEHYEMKDGIPYYKEELLNVAGAQ-----AKITPYAGGG 429 Query: 436 APTLSMDDINKGLKTDFDLWVEQETKQKLLDKGARIPFPALFLTVEEQTEISSLNSDLST 495 AP + D + + QE ++L +I + + +++ L +D+ Sbjct: 430 APHIISDKVASFINPP----QVQEAYEQLEPYLPKIRYASPLFDEATAQKVNVLRNDIDK 485 Query: 496 YVKQMEAKFITGAEPLTGWDNYVATVKKMGGERVAEINQAAYDR 539 Y ++ KFI GA WD + +T+KKM + ++ Q AYD+ Sbjct: 486 YFEEQSTKFIVGALSFDKWDEFQSTLKKMNIADLEKLYQDAYDK 529 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.132 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,288,937,575 Number of extensions: 144145695 Number of successful extensions: 260811 Number of sequences better than 1.0e-05: 221 Number of HSP's gapped: 260293 Number of HSP's successfully gapped: 227 Length of query: 543 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 402 Effective length of database: 1,732,333,088 Effective search space: 696397901376 Effective search space used: 696397901376 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 134 (56.2 bits)