BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0377.0022.p (299 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KHA1.1 B3KHA1_9BACI Binding-protein-dependent transport system... 502 e-140 B3K7Z3.1 B3K7Z3_9BACI Binding-protein-dependent transport system... 432 e-119 B1D744.1 B1D744_9BACL Binding-protein-dependent transport system... 414 e-114 Q8ELL6.1 Q8ELL6_OCEIH Hypothetical conserved protein 323 1e-86 B3KC82.1 B3KC82_9BACI Binding-protein-dependent transport system... 320 9e-86 >B3KHA1.1 B3KHA1_9BACI Binding-protein-dependent transport systems inner membrane component Length = 303 Score = 502 bits (1292), Expect = e-140, Method: Compositional matrix adjust. Identities = 245/299 (81%), Positives = 268/299 (89%) Query: 1 MKESRGDKLFLISTXXXXXXXXXXXXXXXXXILSASISSPQDVNSGAMWLFPKNVTLDGY 60 MKES+ DK+FL S ILSASISSPQ VNSGAMWLFPK +T GY Sbjct: 5 MKESKWDKIFLGSVYIYLCIALIVVLYPLVYILSASISSPQQVNSGAMWLFPKEITWAGY 64 Query: 61 KLVFENPKIWNGYLNTIIYTVLGTLLNLAVTLPASYALSRSDFVGRQLFMAFILFTMFFS 120 +LVFENPKIWNGYLNTI+YT +GTLLNLAVTLPA+YALSRSD VGRQLF+ FILFTMFF+ Sbjct: 65 QLVFENPKIWNGYLNTIVYTGIGTLLNLAVTLPAAYALSRSDLVGRQLFLGFILFTMFFT 124 Query: 121 GGLVPTYLLVKNLGLINSMGALILPVAASVWNIVVARTFFQTTIPKELQEAAHIDGCTNL 180 GGLVPTYL+V+NLGLIN+MGALILPVAASVWNI+VARTFFQTTIPKELQEAA++DGCTNL Sbjct: 125 GGLVPTYLVVRNLGLINTMGALILPVAASVWNIIVARTFFQTTIPKELQEAAYMDGCTNL 184 Query: 181 KLFIRIILPLSAPIVAVMALFYGVGHWNSYFPSLIYLNDEAKYPLQMVLRQILVLQEMSA 240 KLF+RIILPLSAPI+AVMALFYGV HWNSYFP+LIYLNDE+KYPLQMVLRQILVLQEM+A Sbjct: 185 KLFVRIILPLSAPIIAVMALFYGVSHWNSYFPALIYLNDESKYPLQMVLRQILVLQEMTA 244 Query: 241 ETTGAAINGEVAMAMNSKAETASLIKYGVIVVSTLPIVAVYPFLQRYFVQGVMIGSVKG 299 ETTGA I+G+ A AMNSKAETASLIKYGVIVVSTLPIVA+YPFLQRYFVQGVMIGSVKG Sbjct: 245 ETTGAGISGDAARAMNSKAETASLIKYGVIVVSTLPIVALYPFLQRYFVQGVMIGSVKG 303 >B3K7Z3.1 B3K7Z3_9BACI Binding-protein-dependent transport systems inner membrane component Length = 302 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 207/299 (69%), Positives = 245/299 (81%), Gaps = 1/299 (0%) Query: 1 MKESRGDKLFLISTXXXXXXXXXXXXXXXXXILSASISSPQDVNSGAMWLFPKNVTLDGY 60 ++ES+GDKLFL+ I+SASIS P+ V+SG MWL PK +T DGY Sbjct: 5 VRESKGDKLFLLCNYIYLTIALIIVLYPLLYIVSASISDPKYVSSGEMWLIPKGITFDGY 64 Query: 61 KLVFENPKIWNGYLNTIIYTVLGTLLNLAVTLPASYALSRSDFVGRQLFMAFILFTMFFS 120 VFEN IW GY NTIIYTV+GT++NL VTLPA+YALSRSDFVGR FMA L TMFF Sbjct: 65 ARVFENANIWIGYKNTIIYTVIGTIVNLIVTLPAAYALSRSDFVGRGFFMAVFLVTMFFG 124 Query: 121 GGLVPTYLLVKNLGLINSMGALILPVAASVWNIVVARTFFQTTIPKELQEAAHIDGCTNL 180 GGL+P+YLLVK+LG++NSM ALILP AAS+WNI+V+RTFFQ+TIPKELQEAAHIDGCTN Sbjct: 125 GGLIPSYLLVKDLGMVNSMWALILPGAASIWNIIVSRTFFQSTIPKELQEAAHIDGCTNF 184 Query: 181 KLFIRIILPLSAPIVAVMALFYGVGHWNSYFPSLIYLNDEAKYPLQMVLRQILVLQEMSA 240 +LF++I+LPLS PI+AVMALFYGVGHWNSYF ++IYLND AKYPLQ+ LRQILVLQEM+A Sbjct: 185 RLFVKIVLPLSMPIIAVMALFYGVGHWNSYFSAMIYLNDAAKYPLQLFLRQILVLQEMAA 244 Query: 241 ETTGAAINGEVAMAMNSKAETASLIKYGVIVVSTLPIVAVYPFLQRYFVQGVMIGSVKG 299 + G AI+ A AMNSKAE A+L+KY VI+V+TLP++AVYPFLQRYFVQGVMIGSVKG Sbjct: 245 Q-GGGAIDASSAAAMNSKAEIAALVKYAVIIVATLPVIAVYPFLQRYFVQGVMIGSVKG 302 >B1D744.1 B1D744_9BACL Binding-protein-dependent transport systems inner membrane component Length = 302 Score = 414 bits (1064), Expect = e-114, Method: Compositional matrix adjust. Identities = 199/299 (66%), Positives = 241/299 (80%), Gaps = 1/299 (0%) Query: 1 MKESRGDKLFLISTXXXXXXXXXXXXXXXXXILSASISSPQDVNSGAMWLFPKNVTLDGY 60 +KESRGDK+FL ++SASIS P+ V SG MWL+PK +TL+GY Sbjct: 5 IKESRGDKIFLACNYLYVFLAFLIVFYPLVYMISASISDPKAVASGEMWLWPKGITLEGY 64 Query: 61 KLVFENPKIWNGYLNTIIYTVLGTLLNLAVTLPASYALSRSDFVGRQLFMAFILFTMFFS 120 K+VF+N IW GY NTIIYTV+GT +NL VTLPA+YALSR DFVGR FM + TMFFS Sbjct: 65 KMVFKNTNIWIGYENTIIYTVVGTAINLFVTLPAAYALSRRDFVGRNFFMGMFMVTMFFS 124 Query: 121 GGLVPTYLLVKNLGLINSMGALILPVAASVWNIVVARTFFQTTIPKELQEAAHIDGCTNL 180 GGL+PTYLLVK LG++NSM A++LP AAS+WNI+V+RTFFQ++IPKELQEAA IDGC+N+ Sbjct: 125 GGLIPTYLLVKELGMMNSMWAIVLPSAASIWNIIVSRTFFQSSIPKELQEAAQIDGCSNM 184 Query: 181 KLFIRIILPLSAPIVAVMALFYGVGHWNSYFPSLIYLNDEAKYPLQMVLRQILVLQEMSA 240 +LF RIILPLS PI+AVMALFYGVG+WNSYF +LIYLN+ KYPLQ+VLRQILVLQEM A Sbjct: 185 RLFFRIILPLSLPIIAVMALFYGVGNWNSYFSALIYLNEAGKYPLQLVLRQILVLQEMGA 244 Query: 241 ETTGAAINGEVAMAMNSKAETASLIKYGVIVVSTLPIVAVYPFLQRYFVQGVMIGSVKG 299 + G AI+ A AMNSKAE A+L+KY VI+V+T+P++ +YPFLQRYFVQGVMIGSVKG Sbjct: 245 Q-GGGAIDISSATAMNSKAEIAALVKYAVIIVATIPVIVIYPFLQRYFVQGVMIGSVKG 302 >Q8ELL6.1 Q8ELL6_OCEIH Hypothetical conserved protein Length = 298 Score = 323 bits (828), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 149/267 (55%), Positives = 209/267 (78%), Gaps = 2/267 (0%) Query: 32 ILSASISSPQDVNSGAMWLFPKNVTLDGYKLVFENPKIWNGYLNTIIYTVLGTLLNLAVT 91 +LSASIS PQ VN+G MWL+P ++T DG++ VF+N IW GY NTI+YT++G L++L V Sbjct: 33 VLSASISDPQAVNTGKMWLWPVDITFDGFQRVFQNDAIWTGYKNTILYTIVGVLIHLFVL 92 Query: 92 LPASYALSRSDFVGRQLFMAFILFTMFFSGGLVPTYLLVKNLGLINSMGALILPVAASVW 151 LPA+YALSR + +G++ ++ FILFTM F+GGL+PTYL+V+NL ++++M A+++P W Sbjct: 93 LPAAYALSRKELMGKKFWLWFILFTMLFNGGLIPTYLVVRNLQMLDTMWAIVIPGVVGAW 152 Query: 152 NIVVARTFFQTTIPKELQEAAHIDGCTNLKLFIRIILPLSAPIVAVMALFYGVGHWNSYF 211 +I+VARTFFQ TIP +L EA+ IDG ++ LFI+++LPLS PI+AVMALF+GV WN YF Sbjct: 153 SILVARTFFQQTIPDQLVEASKIDGASDFYLFIKVVLPLSLPIIAVMALFHGVALWNQYF 212 Query: 212 PSLIYLNDEAKYPLQMVLRQILVLQEMSAETTGAAINGEVAMAMNSKAETASLIKYGVIV 271 +LIYL E K+PLQ++LRQIL+L E++A + A A + + +TASL+KY VI+ Sbjct: 213 NALIYLRTEDKFPLQLILRQILILNEVNASSISNAAGS--AQSFAEQVKTASLVKYAVII 270 Query: 272 VSTLPIVAVYPFLQRYFVQGVMIGSVK 298 VS LP++ VYPFLQR+FV+GV+IGSVK Sbjct: 271 VSALPLLIVYPFLQRFFVKGVLIGSVK 297 >B3KC82.1 B3KC82_9BACI Binding-protein-dependent transport systems inner membrane component Length = 294 Score = 320 bits (820), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 153/297 (51%), Positives = 211/297 (71%), Gaps = 6/297 (2%) Query: 3 ESRGDKLFLISTXXXXXXXXXXXXXXXXXILSASISSPQDVNSGAMWLFPKNVTLDGYKL 62 ESRGD++F + +LSAS S PQ V G M L+PK V L+ Y Sbjct: 4 ESRGDRIFNVINYAILILVTVIVMYPLLFVLSASFSDPQAVLRGEMLLWPKGVNLNSYAK 63 Query: 63 VFENPKIWNGYLNTIIYTVLGTLLNLAVTLPASYALSRSDFVGRQLFMAFILFTMFFSGG 122 +F+N I +G+ NT++YT LGTL+NL +T+ A+Y LSR DFVGR MA ++FTMFFSGG Sbjct: 64 IFQNQDIISGFTNTLVYTSLGTLINLTMTILAAYPLSRKDFVGRNAIMALLVFTMFFSGG 123 Query: 123 LVPTYLLVKNLGLINSMGALILPVAASVWNIVVARTFFQTTIPKELQEAAHIDGCTNLKL 182 L+PTYLL+KNLG++N++ +I+P A S+WNI++ RTFFQ +IP ELQEAA IDGC+N+K+ Sbjct: 124 LIPTYLLIKNLGMLNTLWVMIIPNAVSIWNIIIMRTFFQQSIPGELQEAATIDGCSNIKI 183 Query: 183 FIRIILPLSAPIVAVMALFYGVGHWNSYFPSLIYLNDEAKYPLQMVLRQILVLQEMSAET 242 RIILPLS PI+AV LFY VGHWN++F +L+YL+D+ K+PLQ++LR+IL+ + Sbjct: 184 LTRIILPLSMPIIAVTILFYAVGHWNAFFNALLYLSDKDKFPLQLILREILIQGQ----- 238 Query: 243 TGAAINGEVAMAMNSKAETASLIKYGVIVVSTLPIVAVYPFLQRYFVQGVMIGSVKG 299 T + A+ + E IKY V+VV+ +P++A+YPFLQRYFV+GVMIG++KG Sbjct: 239 TNDMVKMSTESAIKQQREVEG-IKYAVLVVANIPVLALYPFLQRYFVKGVMIGAIKG 294 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.139 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,545,757,468 Number of extensions: 57924073 Number of successful extensions: 241649 Number of sequences better than 1.0e-05: 5807 Number of HSP's gapped: 231114 Number of HSP's successfully gapped: 5813 Length of query: 299 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 164 Effective length of database: 1,788,859,178 Effective search space: 293372905192 Effective search space used: 293372905192 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)