BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0377.0021.p (304 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KHA2.1 B3KHA2_9BACI Binding-protein-dependent transport system... 496 e-139 B3K7Z4.1 B3K7Z4_9BACI Binding-protein-dependent transport system... 493 e-138 B1D745.1 B1D745_9BACL Binding-protein-dependent transport system... 461 e-128 B3K9I4.1 B3K9I4_9BACI Binding-protein-dependent transport system... 392 e-107 B3KC81.1 B3KC81_9BACI Binding-protein-dependent transport system... 383 e-104 >B3KHA2.1 B3KHA2_9BACI Binding-protein-dependent transport systems inner membrane component Length = 329 Score = 496 bits (1278), Expect = e-139, Method: Compositional matrix adjust. Identities = 240/299 (80%), Positives = 265/299 (88%) Query: 6 TLGKRIWQNWELYLFMAPALLYFLIFHYGPMYGIQIAFKNFVPSKGITGSSWVGFDHFER 65 +LGKRI NWELYLF+ PALLYFL+FHY PMYGIQIAFKNF+PSKGI S WVGFDHFER Sbjct: 31 SLGKRIRVNWELYLFLVPALLYFLVFHYAPMYGIQIAFKNFIPSKGIMDSPWVGFDHFER 90 Query: 66 FFNSYFFWDLLWNTFSISFYELAVGFPLPIILALAFNEVRNGPFKKSVQTVTYAPHFISV 125 FFNSY+FWDLLWNTFS+SFYEL +GFPLPIILALAFNE+R GPFKK VQTVTYAPHFISV Sbjct: 91 FFNSYYFWDLLWNTFSLSFYELIIGFPLPIILALAFNEIRTGPFKKIVQTVTYAPHFISV 150 Query: 126 VVMAGMIITFLSPSSGMIVRVIEFLGFQPAEFLTDPAWFKTVYVFSGVWQSTGWGTIIYL 185 VVMAGMIITFLSPS+G+++++I+++G FL+DPAWFKTVYV SGVWQSTGWGTIIYL Sbjct: 151 VVMAGMIITFLSPSTGILIQLIKWMGIDAPNFLSDPAWFKTVYVLSGVWQSTGWGTIIYL 210 Query: 186 AALSGVDPQLHEAAIVDGASRLKRVLHINLPTIVPTITXXXXXXXXXXXXXXFEKILLLQ 245 AALSGVDPQ HEAAIVDGASR KR+LHINLP I+PTIT FEKILLLQ Sbjct: 211 AALSGVDPQQHEAAIVDGASRFKRLLHINLPAILPTITILLILNMGNILTIGFEKILLLQ 270 Query: 246 NSLNMEASDVISTYVYRAGLVNAQYSFSTAVGLFNSVVNVILLVTVNRIAKRTSENSLW 304 NSLNME+SDVISTYVYR GLV+AQYSFSTAVGLFNSV+NVILLVTVNRIA+RT+ENSLW Sbjct: 271 NSLNMESSDVISTYVYRTGLVDAQYSFSTAVGLFNSVINVILLVTVNRIARRTNENSLW 329 >B3K7Z4.1 B3K7Z4_9BACI Binding-protein-dependent transport systems inner membrane component Length = 323 Score = 493 bits (1270), Expect = e-138, Method: Compositional matrix adjust. Identities = 237/303 (78%), Positives = 265/303 (87%) Query: 2 KGNKTLGKRIWQNWELYLFMAPALLYFLIFHYGPMYGIQIAFKNFVPSKGITGSSWVGFD 61 + TL +R+ +NWELYLF+APA LYF+IFHYGPMYGIQIAFKNF+P+ GITGS WVGFD Sbjct: 21 RKKNTLWRRMIRNWELYLFIAPAFLYFVIFHYGPMYGIQIAFKNFIPTLGITGSPWVGFD 80 Query: 62 HFERFFNSYFFWDLLWNTFSISFYELAVGFPLPIILALAFNEVRNGPFKKSVQTVTYAPH 121 HFERFFNSY+FWDLLWNT SIS YELA+GFPLPIILALAFNEV++ FK++VQTVTYAPH Sbjct: 81 HFERFFNSYYFWDLLWNTLSISLYELAIGFPLPIILALAFNEVKDSFFKRTVQTVTYAPH 140 Query: 122 FISVVVMAGMIITFLSPSSGMIVRVIEFLGFQPAEFLTDPAWFKTVYVFSGVWQSTGWGT 181 FISVVVM+GMIITFLSPSSGMIV +E LGFQP +FLTDPAWFKTVYV SGVWQS GWGT Sbjct: 141 FISVVVMSGMIITFLSPSSGMIVNFVEILGFQPPQFLTDPAWFKTVYVLSGVWQSAGWGT 200 Query: 182 IIYLAALSGVDPQLHEAAIVDGASRLKRVLHINLPTIVPTITXXXXXXXXXXXXXXFEKI 241 IIYLAALSGVDPQLHEAA+VDGASR KR+LHIN+P IVPTIT FEKI Sbjct: 201 IIYLAALSGVDPQLHEAAVVDGASRFKRILHINIPAIVPTITILLILNMGSILGVGFEKI 260 Query: 242 LLLQNSLNMEASDVISTYVYRAGLVNAQYSFSTAVGLFNSVVNVILLVTVNRIAKRTSEN 301 LLLQN LNM +SDVIST+VYR+GLV+AQYSFSTAVGLFNSV+N ILL+ VN+IA+RTSEN Sbjct: 261 LLLQNPLNMSSSDVISTFVYRSGLVDAQYSFSTAVGLFNSVINAILLIAVNQIARRTSEN 320 Query: 302 SLW 304 SLW Sbjct: 321 SLW 323 >B1D745.1 B1D745_9BACL Binding-protein-dependent transport systems inner membrane component Length = 320 Score = 461 bits (1186), Expect = e-128, Method: Compositional matrix adjust. Identities = 219/301 (72%), Positives = 255/301 (84%) Query: 4 NKTLGKRIWQNWELYLFMAPALLYFLIFHYGPMYGIQIAFKNFVPSKGITGSSWVGFDHF 63 K LGKRI QNWELY+F+APA YFLIF Y PMYG+QIAFK+F+P+KGI GS WVG DHF Sbjct: 20 TKRLGKRIVQNWELYIFVAPAFFYFLIFCYLPMYGVQIAFKSFIPTKGIVGSPWVGLDHF 79 Query: 64 ERFFNSYFFWDLLWNTFSISFYELAVGFPLPIILALAFNEVRNGPFKKSVQTVTYAPHFI 123 +RFF+SY+FWDL+WNT S+S Y+LA+GFP+PIILALAFNEVRNG FKK QTVTYAPHFI Sbjct: 80 DRFFHSYYFWDLIWNTLSVSLYDLAIGFPIPIILALAFNEVRNGFFKKMAQTVTYAPHFI 139 Query: 124 SVVVMAGMIITFLSPSSGMIVRVIEFLGFQPAEFLTDPAWFKTVYVFSGVWQSTGWGTII 183 SVVVMAGMII+FLSPS+G++V VI++LGF EFLTDP WFKT+YVFS VWQS GWGTII Sbjct: 140 SVVVMAGMIISFLSPSTGILVHVIQWLGFGTPEFLTDPKWFKTMYVFSNVWQSAGWGTII 199 Query: 184 YLAALSGVDPQLHEAAIVDGASRLKRVLHINLPTIVPTITXXXXXXXXXXXXXXFEKILL 243 YLAALSGVDP LHEAAI+DGASR +R+ HIN+P ++PT+T FEKILL Sbjct: 200 YLAALSGVDPGLHEAAIIDGASRFQRIRHINIPVLIPTMTILLILNMGSLFGVGFEKILL 259 Query: 244 LQNSLNMEASDVISTYVYRAGLVNAQYSFSTAVGLFNSVVNVILLVTVNRIAKRTSENSL 303 LQN LNME+SDVI+T+VYR+GL NAQYSFS AVGLFNSV+N ILL+ VN+I +RTSENSL Sbjct: 260 LQNPLNMESSDVIATFVYRSGLENAQYSFSAAVGLFNSVINAILLIAVNQIVRRTSENSL 319 Query: 304 W 304 W Sbjct: 320 W 320 >B3K9I4.1 B3K9I4_9BACI Binding-protein-dependent transport systems inner membrane component Length = 323 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 184/292 (63%), Positives = 230/292 (78%) Query: 13 QNWELYLFMAPALLYFLIFHYGPMYGIQIAFKNFVPSKGITGSSWVGFDHFERFFNSYFF 72 +NW+LY AP LLYF++FHY PMYG+QIAFK+F+ +KGI S WVGF HFERFF+S++F Sbjct: 32 RNWQLYALFAPVLLYFIVFHYVPMYGVQIAFKDFMANKGIMDSPWVGFKHFERFFDSFYF 91 Query: 73 WDLLWNTFSISFYELAVGFPLPIILALAFNEVRNGPFKKSVQTVTYAPHFISVVVMAGMI 132 W ++ NT I YELAVGFP+PIILAL NE R+G F++ VQTVTYAPHF+S VV+ GMI Sbjct: 92 WRIIKNTMGIGLYELAVGFPIPIILALMINEARSGRFRRFVQTVTYAPHFLSTVVVVGMI 151 Query: 133 ITFLSPSSGMIVRVIEFLGFQPAEFLTDPAWFKTVYVFSGVWQSTGWGTIIYLAALSGVD 192 + FLSP SG++ +I G +P F+T+P+WFK++YV+SGVWQ GW +IIYLAAL+G+D Sbjct: 152 MMFLSPVSGLVNLIITSFGGEPIAFMTEPSWFKSIYVWSGVWQGMGWSSIIYLAALAGID 211 Query: 193 PQLHEAAIVDGASRLKRVLHINLPTIVPTITXXXXXXXXXXXXXXFEKILLLQNSLNMEA 252 PQLHEAA VDGA L+R+ HINLP I PT+T FEKI L+QNSLNMEA Sbjct: 212 PQLHEAAKVDGAGWLRRIWHINLPGIAPTMTILLILNIGSVLGVGFEKIFLMQNSLNMEA 271 Query: 253 SDVISTYVYRAGLVNAQYSFSTAVGLFNSVVNVILLVTVNRIAKRTSENSLW 304 SDVI+T VYR+G++ AQYSFS AVGLFNS+VN I+L+TVNRIA++ SENSLW Sbjct: 272 SDVIATNVYRSGILGAQYSFSAAVGLFNSIVNFIMLITVNRIARKVSENSLW 323 >B3KC81.1 B3KC81_9BACI Binding-protein-dependent transport systems inner membrane component Length = 319 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 181/303 (59%), Positives = 231/303 (76%) Query: 2 KGNKTLGKRIWQNWELYLFMAPALLYFLIFHYGPMYGIQIAFKNFVPSKGITGSSWVGFD 61 K + + RI +NW+LY ++P + Y+++F Y PMYGIQIAFK+F+ ++GI GS WVGF+ Sbjct: 17 KRKRFMWNRILRNWQLYALISPVIAYYVLFQYVPMYGIQIAFKDFIATQGIWGSPWVGFE 76 Query: 62 HFERFFNSYFFWDLLWNTFSISFYELAVGFPLPIILALAFNEVRNGPFKKSVQTVTYAPH 121 HF+RFFNSY+FW L+ NT I Y LAVGFP+PIILAL NEVR FKK VQT+TYAPH Sbjct: 77 HFDRFFNSYYFWRLIKNTLGIGLYSLAVGFPIPIILALLMNEVRAERFKKFVQTITYAPH 136 Query: 122 FISVVVMAGMIITFLSPSSGMIVRVIEFLGFQPAEFLTDPAWFKTVYVFSGVWQSTGWGT 181 F+S VV+ GM++ FLSP G+I IE G QP F+T+P+WFK++YV S VWQ+ GW + Sbjct: 137 FLSTVVVVGMMMIFLSPRYGIINHFIEMFGGQPINFMTEPSWFKSLYVLSDVWQTMGWSS 196 Query: 182 IIYLAALSGVDPQLHEAAIVDGASRLKRVLHINLPTIVPTITXXXXXXXXXXXXXXFEKI 241 IIYLAAL+G+D QLHEAA VDGA+RL+R+ HIN+P I+PTI FEK+ Sbjct: 197 IIYLAALAGIDNQLHEAARVDGATRLQRIWHINIPGIMPTIIILLILNMGSIMGIGFEKV 256 Query: 242 LLLQNSLNMEASDVISTYVYRAGLVNAQYSFSTAVGLFNSVVNVILLVTVNRIAKRTSEN 301 LL+QN+LNME+SD+I+TYVYR G+ NA+YSFS A+GLFNSV+N ILLV VN I+KR SE Sbjct: 257 LLMQNNLNMESSDIIATYVYRMGIQNAEYSFSAAIGLFNSVINFILLVAVNFISKRVSET 316 Query: 302 SLW 304 SLW Sbjct: 317 SLW 319 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.140 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,738,503,718 Number of extensions: 69553558 Number of successful extensions: 214147 Number of sequences better than 1.0e-05: 4769 Number of HSP's gapped: 209967 Number of HSP's successfully gapped: 4769 Length of query: 304 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 169 Effective length of database: 1,788,859,178 Effective search space: 302317201082 Effective search space used: 302317201082 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)