BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0377.0017.p (230 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C5D4T6.1 C5D4T6_9BACI Deoxyribose-phosphate aldolase EC=4.1.2.4 326 1e-87 Q9KD67.1 DEOC_BACHD Deoxyribose-phosphate aldolase EC=4.1.2.4 317 6e-85 C3BQ46.1 C3BQ46_9BACI Deoxyribose-phosphate aldolase 1 311 2e-83 A6CSW6.1 A6CSW6_9BACI Dra 309 1e-82 C3B865.1 C3B865_BACMY Deoxyribose-phosphate aldolase 308 2e-82 >C5D4T6.1 C5D4T6_9BACI Deoxyribose-phosphate aldolase EC=4.1.2.4 Length = 223 Score = 326 bits (835), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 163/222 (73%), Positives = 188/222 (84%), Gaps = 1/222 (0%) Query: 9 NTLSGIIDHTLLKADARKEDIIKLAEEAKTYTFASVCVNPAWVATAHEVLKDTPEVKVCT 68 N ++ +IDHTLLKADA K I+KL EEAK Y FASVCVNP WVATA E+LK T +VKVCT Sbjct: 3 NNIAKMIDHTLLKADATKAQIVKLCEEAKQYGFASVCVNPTWVATAAELLKGT-DVKVCT 61 Query: 69 VIGFPLGASTPETKAFETTNAISNGAGEVDMVINIGALKDGDNELVKRDIAAVVGAARGK 128 VIGFPLGA+TPETKAFET NAI NGA EVDMVIN+GALKDG+++LV+RDI AVV A+GK Sbjct: 62 VIGFPLGANTPETKAFETKNAIENGAAEVDMVINVGALKDGNDDLVERDIRAVVDVAKGK 121 Query: 129 ALTKVIIETCLLTDEEKVRACKLAVEAGADFVKTSTGFSTGGATKEDIALMRAAVGPDIG 188 AL KVIIE CLLT+EEKVRAC+LAV+AGAD+VKTSTGFSTGGAT ED+ALMR VGP+IG Sbjct: 122 ALVKVIIEACLLTEEEKVRACQLAVKAGADYVKTSTGFSTGGATPEDVALMRKTVGPNIG 181 Query: 189 VKASGGVRSAEDALIMVGAGATRIGTSGGVAIAKGEQSQSGY 230 VKASGGVR + A M+ AGATRIGTS GV+I +G+ + S Y Sbjct: 182 VKASGGVRDMQSAEAMIQAGATRIGTSSGVSIVEGKTANSNY 223 >Q9KD67.1 DEOC_BACHD Deoxyribose-phosphate aldolase EC=4.1.2.4 Length = 224 Score = 317 bits (812), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 160/223 (71%), Positives = 182/223 (81%) Query: 8 TNTLSGIIDHTLLKADARKEDIIKLAEEAKTYTFASVCVNPAWVATAHEVLKDTPEVKVC 67 + +++ +IDHTLLK + ++ I+KL EEAK Y+FASVCVNP WVA A ++LKD P+VKVC Sbjct: 2 SRSIAQMIDHTLLKPNTTEDQIVKLCEEAKEYSFASVCVNPTWVALAAQLLKDAPDVKVC 61 Query: 68 TVIGFPLGASTPETKAFETTNAISNGAGEVDMVINIGALKDGDNELVKRDIAAVVGAARG 127 TVIGFPLGA+TPE KAFETTNAI NGA EVDMVINIGALKD ELV RDI AVV AA G Sbjct: 62 TVIGFPLGATTPEVKAFETTNAIENGATEVDMVINIGALKDKQYELVGRDIQAVVKAAEG 121 Query: 128 KALTKVIIETCLLTDEEKVRACKLAVEAGADFVKTSTGFSTGGATKEDIALMRAAVGPDI 187 KALTKVIIET LLT+EEK AC+LAV+AGADFVKTSTGFS GGAT EDIALMR VGP++ Sbjct: 122 KALTKVIIETSLLTEEEKKAACELAVKAGADFVKTSTGFSGGGATAEDIALMRKVVGPNL 181 Query: 188 GVKASGGVRSAEDALIMVGAGATRIGTSGGVAIAKGEQSQSGY 230 GVKASGGVR DA M+ AGATRIG S GVAI GE+S+ Y Sbjct: 182 GVKASGGVRDLSDAKAMIDAGATRIGASAGVAIVNGERSEGSY 224 >C3BQ46.1 C3BQ46_9BACI Deoxyribose-phosphate aldolase 1 Length = 221 Score = 311 bits (798), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 157/217 (72%), Positives = 183/217 (84%), Gaps = 1/217 (0%) Query: 14 IIDHTLLKADARKEDIIKLAEEAKTYTFASVCVNPAWVATAHEVLKDTPEVKVCTVIGFP 73 +IDHTLLK D +KE I+ L EEAK + FASVCVNP WV TA E+LKDT +VKVCTVIGFP Sbjct: 6 LIDHTLLKPDTKKEAIVTLCEEAKKHDFASVCVNPTWVETAAELLKDT-DVKVCTVIGFP 64 Query: 74 LGASTPETKAFETTNAISNGAGEVDMVINIGALKDGDNELVKRDIAAVVGAARGKALTKV 133 LG +TPETKAFET +AI+ GA EVDMVINIGALKD ++ELV+RD+ AVV AA+GKAL K+ Sbjct: 65 LGVNTPETKAFETQDAIAKGATEVDMVINIGALKDKNDELVERDVRAVVEAAKGKALVKI 124 Query: 134 IIETCLLTDEEKVRACKLAVEAGADFVKTSTGFSTGGATKEDIALMRAAVGPDIGVKASG 193 IIETCLLT+EEKVRAC+L+V+AG DFVKTSTGFSTGGAT ED+ALMR VGP+IGVKASG Sbjct: 125 IIETCLLTEEEKVRACELSVKAGVDFVKTSTGFSTGGATVEDVALMRKTVGPEIGVKASG 184 Query: 194 GVRSAEDALIMVGAGATRIGTSGGVAIAKGEQSQSGY 230 GVR+ ED MV AGATRIGTS GVA+ G+ + + Y Sbjct: 185 GVRNGEDMDAMVEAGATRIGTSAGVALVSGKTATTDY 221 >A6CSW6.1 A6CSW6_9BACI Dra Length = 223 Score = 309 bits (791), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 158/222 (71%), Positives = 180/222 (81%), Gaps = 1/222 (0%) Query: 9 NTLSGIIDHTLLKADARKEDIIKLAEEAKTYTFASVCVNPAWVATAHEVLKDTPEVKVCT 68 N ++ +IDHTLLKAD+ K+ + + EEAK Y FASVCVNP WV + E+L+ T +VKVCT Sbjct: 3 NNIAKMIDHTLLKADSTKDQVTTICEEAKEYNFASVCVNPGWVKYSAELLQGT-DVKVCT 61 Query: 69 VIGFPLGASTPETKAFETTNAISNGAGEVDMVINIGALKDGDNELVKRDIAAVVGAARGK 128 VIGFPLGA+T ETKAFET +AI GA EVDMVINIGALKDG+++LVK+DI AV AA+GK Sbjct: 62 VIGFPLGATTSETKAFETKDAIEKGATEVDMVINIGALKDGNDDLVKKDIQAVTEAAKGK 121 Query: 129 ALTKVIIETCLLTDEEKVRACKLAVEAGADFVKTSTGFSTGGATKEDIALMRAAVGPDIG 188 ALTKVIIET LLTDEEK RAC+LAVEAG D+VKTSTGFSTGGAT EDI LMR VGPDIG Sbjct: 122 ALTKVIIETSLLTDEEKERACRLAVEAGTDYVKTSTGFSTGGATIEDIKLMRKTVGPDIG 181 Query: 189 VKASGGVRSAEDALIMVGAGATRIGTSGGVAIAKGEQSQSGY 230 VKASGGVRS EDA M+ AGATRIG S GV I +G S S Y Sbjct: 182 VKASGGVRSVEDAQNMIEAGATRIGASSGVQIVQGLTSDSDY 223 >C3B865.1 C3B865_BACMY Deoxyribose-phosphate aldolase Length = 221 Score = 308 bits (790), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 157/217 (72%), Positives = 182/217 (83%), Gaps = 1/217 (0%) Query: 14 IIDHTLLKADARKEDIIKLAEEAKTYTFASVCVNPAWVATAHEVLKDTPEVKVCTVIGFP 73 +IDHTLLK D +K I+ L EEAK + FASVCVNP WV TA E+LK T +VKVCTVIGFP Sbjct: 6 LIDHTLLKPDTKKAAIVTLCEEAKKHDFASVCVNPTWVETAAELLKGT-DVKVCTVIGFP 64 Query: 74 LGASTPETKAFETTNAISNGAGEVDMVINIGALKDGDNELVKRDIAAVVGAARGKALTKV 133 LGA+TPETKAFET +AI+ GA EVDMVINIGALKD ++ELV+RD+ AVV AARGKAL K+ Sbjct: 65 LGANTPETKAFETQDAIAKGATEVDMVINIGALKDKNDELVERDVRAVVEAARGKALVKI 124 Query: 134 IIETCLLTDEEKVRACKLAVEAGADFVKTSTGFSTGGATKEDIALMRAAVGPDIGVKASG 193 IIETCLLT+EEKVRAC+L+V+AG DFVKTSTGFSTGGAT ED+ALMR VGP+IGVKASG Sbjct: 125 IIETCLLTEEEKVRACELSVKAGVDFVKTSTGFSTGGATVEDVALMRKTVGPEIGVKASG 184 Query: 194 GVRSAEDALIMVGAGATRIGTSGGVAIAKGEQSQSGY 230 GVR+ ED MV AGATRIGTS GVA+ G+ + + Y Sbjct: 185 GVRNGEDMDAMVEAGATRIGTSAGVALVSGKTATTDY 221 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.130 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,306,534,904 Number of extensions: 52711769 Number of successful extensions: 138125 Number of sequences better than 1.0e-05: 1332 Number of HSP's gapped: 135380 Number of HSP's successfully gapped: 1333 Length of query: 230 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 99 Effective length of database: 1,826,543,238 Effective search space: 180827780562 Effective search space used: 180827780562 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 129 (54.3 bits)