BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0377.0016.p (251 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z900.1 C0Z900_BREBN Putative uncharacterized protein 216 2e-54 Q24NU9.1 Q24NU9_DESHY Putative uncharacterized protein 209 1e-52 B8FWZ2.1 B8FWZ2_DESHD Band 7 protein 209 1e-52 Q0AUZ6.1 Q0AUZ6_SYNWW SPFH domain, Band 7 family protein 208 3e-52 Q2LRN6.1 Q2LRN6_SYNAS Bacterial HflC protein 169 2e-40 >C0Z900.1 C0Z900_BREBN Putative uncharacterized protein Length = 276 Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 102/245 (41%), Positives = 158/245 (64%) Query: 1 VIIGGNAFTSVEYGHVGLYKTFGKLNNNMLSPGIHFKIPFIQTVIQVNTQVTKAETDTSA 60 V++G +FT + GH G+ G + +L G+HFKIPFIQTV+ + +V K+E ++ Sbjct: 29 VLLGTQSFTIISAGHSGVVLQLGAVQPKVLQEGMHFKIPFIQTVVPMEVRVQKSEMSQTS 88 Query: 61 SSKDLQPVSTHVAVNYSVNKDSAYNLMNNIGGNFDGVIINPAIQEIVKEVTAKYPAEDLI 120 +S+DLQ VST +AVN+ ++ ++ L +G ++ I++PAI E K VTA+Y AE+L+ Sbjct: 89 ASRDLQTVSTTIAVNHHLDAENVNKLYQQVGLEYNSRIVDPAIAESFKAVTAQYTAEELV 148 Query: 121 TRRDLVAGEISELLTKRLGRYDLVVNDINIVNFKFSDAFNQSIEXXXXXXXXXXXXENDL 180 ++R V+ ++ E+L K+L Y++++++INI F FSD FN++IE + DL Sbjct: 149 SKRSEVSQKVKEVLHKKLSNYNIILDEINIREFTFSDEFNRAIESKQVAEQQALKSKLDL 208 Query: 181 RRVXXXXXXXXXXXXXXXXSLRLKKQEVTPELVQLKQIEVQEKALEKWNGVLPSVTGGAT 240 R+ +LRL+KQEVTPEL+QL+QIE Q +A+ KW+G LPSVTGGAT Sbjct: 209 ERIKIEKEQEITRAEAQAQALRLQKQEVTPELIQLRQIEAQLEAIRKWDGKLPSVTGGAT 268 Query: 241 PFVDV 245 PF++V Sbjct: 269 PFINV 273 >Q24NU9.1 Q24NU9_DESHY Putative uncharacterized protein Length = 278 Score = 209 bits (533), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 106/247 (42%), Positives = 156/247 (63%) Query: 1 VIIGGNAFTSVEYGHVGLYKTFGKLNNNMLSPGIHFKIPFIQTVIQVNTQVTKAETDTSA 60 VI+ +AF V G G+ G + +L+ G+HFKIPF+Q+V+ + +V K++++ +A Sbjct: 30 VILALDAFVIVNAGQRGIVLQLGAVRPIVLTEGLHFKIPFVQSVVPMEVRVQKSQSEQTA 89 Query: 61 SSKDLQPVSTHVAVNYSVNKDSAYNLMNNIGGNFDGVIINPAIQEIVKEVTAKYPAEDLI 120 +SKDLQ V+T VAVN+ ++ L N+G ++ I++PAI E VK +TA+Y AE+LI Sbjct: 90 ASKDLQIVTTTVAVNFHLDPIQVNKLYQNVGLSYGERIVDPAIGEAVKAITAQYTAEELI 149 Query: 121 TRRDLVAGEISELLTKRLGRYDLVVNDINIVNFKFSDAFNQSIEXXXXXXXXXXXXENDL 180 ++R V+ +I E L +L Y +V+++INI FKFS FN +IE DL Sbjct: 150 SKRSEVSAKIKETLASKLATYYMVLDEINITEFKFSQEFNNAIEQKQIAEQQALKANLDL 209 Query: 181 RRVXXXXXXXXXXXXXXXXSLRLKKQEVTPELVQLKQIEVQEKALEKWNGVLPSVTGGAT 240 +R+ SLRL+KQEVTPELVQL++IE + KA+EKW+G LP+VTGGA Sbjct: 210 QRIEIEAKQKVEQAKAEAESLRLQKQEVTPELVQLREIEAKIKAIEKWDGKLPNVTGGAV 269 Query: 241 PFVDVQS 247 PF+DV S Sbjct: 270 PFIDVNS 276 >B8FWZ2.1 B8FWZ2_DESHD Band 7 protein Length = 278 Score = 209 bits (533), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 106/247 (42%), Positives = 156/247 (63%) Query: 1 VIIGGNAFTSVEYGHVGLYKTFGKLNNNMLSPGIHFKIPFIQTVIQVNTQVTKAETDTSA 60 VI+ +AF V G G+ G + +L+ G+HFKIPF+Q+V+ + +V K++++ +A Sbjct: 30 VILALDAFVIVNAGQRGIVLQLGAVRPIVLTEGLHFKIPFVQSVVPMEVRVQKSQSEQTA 89 Query: 61 SSKDLQPVSTHVAVNYSVNKDSAYNLMNNIGGNFDGVIINPAIQEIVKEVTAKYPAEDLI 120 +SKDLQ V+T VAVN+ ++ L N+G ++ I++PAI E VK +TA+Y AE+LI Sbjct: 90 ASKDLQIVTTTVAVNFHLDPIQVNKLYQNVGLSYGERIVDPAIGEAVKAITAQYTAEELI 149 Query: 121 TRRDLVAGEISELLTKRLGRYDLVVNDINIVNFKFSDAFNQSIEXXXXXXXXXXXXENDL 180 ++R V+ +I E L +L Y +V+++INI FKFS FN +IE DL Sbjct: 150 SKRSEVSAKIKETLASKLATYYMVLDEINITEFKFSQEFNNAIEQKQIAEQQALKANLDL 209 Query: 181 RRVXXXXXXXXXXXXXXXXSLRLKKQEVTPELVQLKQIEVQEKALEKWNGVLPSVTGGAT 240 +R+ SLRL+KQEVTPELVQL++IE + KA+EKW+G LP+VTGGA Sbjct: 210 QRIEIEAKQKVEQAKAEAESLRLQKQEVTPELVQLREIEAKIKAIEKWDGKLPNVTGGAV 269 Query: 241 PFVDVQS 247 PF+DV S Sbjct: 270 PFIDVNS 276 >Q0AUZ6.1 Q0AUZ6_SYNWW SPFH domain, Band 7 family protein Length = 282 Score = 208 bits (530), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 107/235 (45%), Positives = 145/235 (61%) Query: 11 VEYGHVGLYKTFGKLNNNMLSPGIHFKIPFIQTVIQVNTQVTKAETDTSASSKDLQPVST 70 V GHVG+ FG + L GIHF +P Q V V+ +V KAE +A+SKDLQ V++ Sbjct: 44 VPAGHVGVKLNFGAVQEPPLKEGIHFIVPIYQKVANVDCRVRKAEHHAAAASKDLQTVTS 103 Query: 71 HVAVNYSVNKDSAYNLMNNIGGNFDGVIINPAIQEIVKEVTAKYPAEDLITRRDLVAGEI 130 VAVNY V+ SA NL +G +++ +I PAIQE +K VTA Y AE+LIT+R VA + Sbjct: 104 MVAVNYHVSPASAANLYQRVGMDYENTVIAPAIQESIKAVTAGYTAEELITKRAEVALKT 163 Query: 131 SELLTKRLGRYDLVVNDINIVNFKFSDAFNQSIEXXXXXXXXXXXXENDLRRVXXXXXXX 190 SE+L ++L Y + V+ NIVNF+FS FN++IE + DL R+ Sbjct: 164 SEVLERKLLDYHIKVDRFNIVNFEFSKEFNKAIEEKQTAEQRALKAQRDLERIKIEAAQK 223 Query: 191 XXXXXXXXXSLRLKKQEVTPELVQLKQIEVQEKALEKWNGVLPSVTGGATPFVDV 245 SLR+++QEVTPEL+ L++IE Q A+EKWNG LP V+GGA PF+DV Sbjct: 224 VTRAQAEAESLRIQRQEVTPELLHLREIENQRLAIEKWNGQLPRVSGGAIPFIDV 278 >Q2LRN6.1 Q2LRN6_SYNAS Bacterial HflC protein Length = 284 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 93/237 (39%), Positives = 142/237 (59%), Gaps = 1/237 (0%) Query: 8 FTSVEYGHVGLYKTFGKLNNNMLSPGIHFKIPFIQTVIQVNTQVTKAETDTSASSKDLQP 67 F + G G+ FG + + +L G+HF+IP +QTVI V+ +V K+E++ +A+S DLQ Sbjct: 39 FVQIGAGERGVVLNFGAVQDTVLGEGLHFRIPIMQTVIPVDVKVQKSESEAAAASSDLQD 98 Query: 68 VSTHVAVNYSVNKDSAYNLMNNIGGNFDGVIINPAIQEIVKEVTAKYPAEDLITRRDLVA 127 VS+ VA+NY + D A + +IG F II+PA+QE+VK VTAKY AE+LIT+R V+ Sbjct: 99 VSSTVALNYHIIPDKANIVYQSIGLAFKERIIDPAVQEVVKAVTAKYTAEELITKRPAVS 158 Query: 128 GEISELLTKRLGRYDLVVNDINIVNFKFSDAFNQSIEXXXXXXXXXXXXENDLRRVXXXX 187 + LT RL ++ V+ +IV F FS F ++IE + DL R+ Sbjct: 159 DAMKAALTDRLLANNISVDAFSIVGFSFSKGFMEAIEAKQTAEQLALKAKRDLERIKIEA 218 Query: 188 XXXXXXXXXXXXSLRLKKQEVTPELVQLKQIEVQEKALEKWNGVLPSVTG-GATPFV 243 +LRL++ ++ +L++L++IE KA+EKWNG++P VTG GA PF+ Sbjct: 219 DQKVAAAKAEAEALRLQRANISADLIELRRIEANLKAIEKWNGIMPQVTGAGAVPFI 275 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.133 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,252,042,251 Number of extensions: 43655596 Number of successful extensions: 94376 Number of sequences better than 1.0e-05: 612 Number of HSP's gapped: 94261 Number of HSP's successfully gapped: 612 Length of query: 251 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 119 Effective length of database: 1,817,122,223 Effective search space: 216237544537 Effective search space used: 216237544537 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 129 (54.3 bits)