BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0377.0015.p (594 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D948.1 B1D948_9BACL Methyl-accepting chemotaxis sensory transd... 405 e-111 A3I6L7.1 A3I6L7_9BACI Methyl-accepting chemotaxis protein 207 4e-51 C0Z592.1 C0Z592_BREBN Putative methyl-accepting chemotaxis protein 202 1e-49 B1HYW9.1 B1HYW9_LYSSC Methyl-accepting chemotaxis protein 198 1e-48 B1YGG4.1 B1YGG4_EXIS2 Methyl-accepting chemotaxis sensory transd... 192 1e-46 >B1D948.1 B1D948_9BACL Methyl-accepting chemotaxis sensory transducer Length = 584 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 221/585 (37%), Positives = 346/585 (59%), Gaps = 1/585 (0%) Query: 10 MFSFVRKRLIARIFCVMTAVILCIAAGNIAIQWVNTGSAVKGTISSYNMNIASHYAAQAD 69 M+ F R RLI ++ ++ A+++ +++ I IQ NT A + I ++N+++A YA Q D Sbjct: 1 MYMF-RSRLILKLSVMILAILVLLSSALIYIQVQNTKKASEEAIGNFNIHMAEAYAGQFD 59 Query: 70 AGRFSDFLDDPQETDLYWSLRAELDQFRQSIGARYVYFVKIDEANQPLLMIDGRPKGDPL 129 ++DF+ D QE DLYW +R +++++R+ IGA YVY V+I++ +P+L+IDG+PK Sbjct: 60 VSAYADFVKDQQENDLYWKIREQMNEYRERIGAMYVYTVQINDKGEPILLIDGQPKDSDS 119 Query: 130 ASPINENTDMPDAAVEAVLAGENASTPLIKNPEYGDYISAYVPMRDGQGKLVGALGIDTD 189 ASPI E TD+P A+ + GE A + +I+N EYGDYIS+Y P+RD GK++G LGIDTD Sbjct: 120 ASPIGEVTDIPLDAIGKLNNGETAKSGIIRNEEYGDYISSYAPLRDAGGKMIGVLGIDTD 179 Query: 190 VAVLSTLTRDVLLQSLPXXXXXXXXXXXXXXIMAWFVSRALRPLRTITESAGTMARGDLA 249 V+V T+ +DV+ S+P +A+F++R LRPL I + A +A G+LA Sbjct: 180 VSVSKTIYKDVIGDSVPLFIIMGVLTLLVFLFIAFFLARTLRPLGVIVKGAEAIAHGNLA 239 Query: 250 EAARILHARPVKSRDEIGTAYQAMLRMSGDLNTRVEGIVSHVSTASDLLYGSSETFARNA 309 EA + L VKS+DEIG Y AM +M L +E +V ++ + + S+E F A Sbjct: 240 EARQQLQVTKVKSKDEIGQVYSAMTQMIARLGVTLEDVVRDMALTTQSIVHSTEQFGTEA 299 Query: 310 DDVLRMSETVNGKIADIYAGASSQTEGAQSSALAIDEMAQGISRIXXXXXXXXXXXXXXL 369 ++ M+E + + + GA Q GA+ SA +++++ Q I R+ L Sbjct: 300 AQMVAMNEKLEHSVTTMADGARHQRMGAEESASSMEDITQAIQRVSEASMQVSSVSHEAL 359 Query: 370 EIVDSSQAAMHQMNRQMKSISLSTGQTLETALLLQSYAEEIEGALAAIRQFADQTKLLAL 429 E + + ++H + +Q++ ++ QT ++ LLQSY ++IE L +I +DQTKLLAL Sbjct: 360 ESAEHGRESIHGLRQQVELMASVAKQTADSVGLLQSYMQQIEPVLQSITSISDQTKLLAL 419 Query: 430 NASIEAARAGEHGRGFTVVAGEVRKLAEGSAASVERVADLLLHIGNASASIGTQMTDVSK 489 NASIEAARAGEHG GF +VAGEVRKLAE SA S +V LL IG S IG +M S Sbjct: 420 NASIEAARAGEHGSGFAIVAGEVRKLAEASAISASQVTSLLEQIGQESVHIGDRMQAGSV 479 Query: 490 EVKEGARMXXXXXXXXXXXXXXFREVAEQITDVSATAEQLSAGSEEVAATVGSMAHIAGG 549 E+ +G + F V QI ++SA AE++ AGSEEVAA+V +A I+ Sbjct: 480 EMVKGTELSGRVEALFDRTMDQFIHVNSQIQEISAAAEEVLAGSEEVAASVEQIAQISRA 539 Query: 550 VSEQTRQIRELTDLQLEKIKEVYEASMTISANTSDMREAIRQVKV 594 ++ + + +++ QLE K + + + + + + + A+ + K+ Sbjct: 540 TADSSATLEQMSKHQLEAAKRIADTTEQLKSRSEGLEAAVGKFKL 584 >A3I6L7.1 A3I6L7_9BACI Methyl-accepting chemotaxis protein Length = 588 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 168/605 (27%), Positives = 281/605 (46%), Gaps = 55/605 (9%) Query: 17 RLIARIFCVMTAVILCIAAGNIAIQWVNTGSAVKGTISSYNMNIASHYAAQADAGRFSDF 76 +L RI + +++ + A I S+V T+ + + +A + A Q + + Sbjct: 12 KLSNRIVLMSFVMLVALLAFFIVTMIYTAKSSVNKTMGAQAVAVAENIAKQLNPEDYEQL 71 Query: 77 LDDPQETDLYWSLRAELDQFRQSIGARYVYFVKIDEANQPL-LMIDGRPKGDPLASPINE 135 DP+E++LYW LR EL++ R+ G Y Y + + +Q + ++DG P D E Sbjct: 72 SKDPRESNLYWQLREELNELREINGVLYAYTFAVPQEDQKVRFLVDGMPADD------QE 125 Query: 136 NTDMPDAAVEAVLAGENASTPLIKNPE----------------YGDYISAYVPMRDGQGK 179 N A + GE +S+ L K+ E +GDY+S VP++D G Sbjct: 126 N---------AGVIGEESSSTLYKDIEKVMDTGSYYSNILHSGFGDYLSGTVPLKDASGN 176 Query: 180 LVGALGIDTDVAVLSTLTRDVLLQSLPXXXXXXXXXX-XXXXIMAWFVSRALRPLRTITE 238 +V +G+D +V +S +T VL++ LP IM ++++AL+PL + + Sbjct: 177 IVAFIGVDIEVNEVSGVTNAVLIEILPALIIVMLVLTGIVMFIMYRYINQALKPLANLGD 236 Query: 239 SAGTMARGDLAEAARILHARPVKSRDEIGTAYQAMLRMSGDLNTRVEGIVSHVSTASDLL 298 + + A+GD+A+A + ++ ++EI +A L + I Sbjct: 237 AVSSFAQGDIAKATMEVEKIQLRGKNEISMFARAFQESLQKLKETFQTI----------- 285 Query: 299 YGSSETFA-----RNADDVLRMSETVNGKIAD----IYAGASSQTEGAQSSALAIDEMAQ 349 +TFA + D+ + ET N +IAD I AG+ Q + Q L ++EM+ Sbjct: 286 --QQQTFALQSVVKKIDETTQHVETSNAQIADRIVEIAAGSEQQQQNNQEVVLTMNEMSI 343 Query: 350 GISRIXXXXXXXXXXXXXXLEIVDSSQAAMHQMNRQMKSISLSTGQTLETALLLQSYAEE 409 GI R+ +V++S ++ Q++++ S +T + + Sbjct: 344 GIQRLADTTSEIAESSSTMTGLVETSVNHSQEVVSQIQNVESSVLRTAKHVEEMGDRFGS 403 Query: 410 IEGALAAIRQFADQTKLLALNASIEAARAGEHGRGFTVVAGEVRKLAEGSAASVERVADL 469 IE + I ADQT LLALNA+IEAARAGE G+GF VVA EVRKLAE S AS + + Sbjct: 404 IEEMVTIITSIADQTNLLALNAAIEAARAGEAGKGFAVVADEVRKLAELSKASADEIHTH 463 Query: 470 LLHIGNASASIGTQMTDVSKEVKEGARMXXXXXXXXXXXXXXFREVAEQITDVSATAEQL 529 L + +M+ + +V+ G R EV +I D SA E++ Sbjct: 464 LKSFKTITERALHEMSGSAVDVQAGNRAVQRIGESLEQILESVVEVNNKIQDDSAVIEEM 523 Query: 530 SAGSEEVAATVGSMAHIAGGVSEQTRQIRELTDLQLEKIKEVYEASMTISANTSDMREAI 589 SAGSEE+ AT M IA + T+++ +DLQ+ ++ E+ E + + ++ E I Sbjct: 524 SAGSEEILATTEQMNDIAQHNVQGTKEVAMASDLQVTRVSELNEVVALLDQTSKEVTETI 583 Query: 590 RQVKV 594 K+ Sbjct: 584 NTFKL 588 >C0Z592.1 C0Z592_BREBN Putative methyl-accepting chemotaxis protein Length = 574 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 165/584 (28%), Positives = 275/584 (47%), Gaps = 63/584 (10%) Query: 16 KRLIARIFCVMTAVILCIAAGNIAIQWVNTGSAVKGTISSYNMNIASHYAAQADAGRFSD 75 K L R+ ++ +I + A NI + + N+ + V+ T+S ++N A H + D+ + + Sbjct: 3 KSLATRVVALVAVIIAVMMAINIIMIYENSVATVEKTLSRSSINTALHISQGLDSEKIAT 62 Query: 76 FLDDPQETDLYWSLRAELDQFRQSIGARYVYFVKIDEANQPLLMIDGRPKGDPLASPINE 135 F+ P+E+D YWS+R L ++ Q GA YVY + D + +M+DG KG A+ I + Sbjct: 63 FISQPKESDDYWSIRNMLLEYTQKTGALYVYILHSD-GEKVKIMVDGMAKGAEGAATIGQ 121 Query: 136 NTD---MPDAAVEAVLAGENASTPLIKNPEYGDYISAYVPMRDGQGKLVGALGIDTDVAV 192 T M D A VLAG + STP++K+P YGDY+SA+ P+ D G+++ LG+DT Sbjct: 122 ETSSTGMADIA--PVLAGGSNSTPIVKDPVYGDYLSAFAPIEDPSGQVIAVLGVDTAADK 179 Query: 193 LSTLTRDVLLQSLPXXXXXXXXXXXXXXIMAWF-VSRALRPLRTITESAGTMARGDLAEA 251 + + VL +++P +F + + LRPL+ + E++ +A GDL Sbjct: 180 VELINDQVLDETMPRIIMAMIVVTIIALGAVFFLIKKLLRPLQVVQEASMRIASGDLTST 239 Query: 252 ARILHARPVKSRDEIGTAYQAMLRMSGDLNTRVEGI---VSHVST-ASDLLYGSSETFAR 307 + + +DEIG A M+ L + G+ H+ T A+ + G++ + Sbjct: 240 EISVSNK----KDEIGRIVVAFGEMTAQLRQIIGGVKETTEHIDTMANSIREGANSVREQ 295 Query: 308 NADDVLRMSETVNGKIADIYAGASSQTEGA-QSSALAIDEMAQGISRIXXXXXXXXXXXX 366 N + V+ E G + QT A + + + E +S + Sbjct: 296 NKNIVVTSQEIAQG---------NEQTATAMEMTVQTVQEFLSELSELNTAIDEMDAVSN 346 Query: 367 XXLEIVDSSQAAMHQM-------NRQMKSISLSTGQTLETALLLQSYAEEIEGALAAIRQ 419 +I +SS + + N+Q + T +L+ + I + I+Q Sbjct: 347 RVSDIGESSYRVLQEFLADGTETNKQFHEVQ-------NTMAILEEKSSRINDVIETIQQ 399 Query: 420 FADQTKLLALNASIEAARAGEHGRGFTVVAGEVRKLAEGSAASV----ERVADLLLHIGN 475 A QT LLALNA+IE+ARAGE GRGF VVAGEVRKLAE + A+ E + D+ + Sbjct: 400 IAGQTNLLALNAAIESARAGEAGRGFAVVAGEVRKLAEQTGAATHVIQESIKDIQDQVRQ 459 Query: 476 ASASI---------GTQMTD-VSKEVKEGARMXXXXXXXXXXXXXXF-------REVAEQ 518 A+ GT+ D V++ + + M +V E Sbjct: 460 ATEKTNATLDRYNAGTERLDSVTQGITALSDMTHTLKTSLANVMASVETMKQGQNKVNES 519 Query: 519 ITDVSATAEQLSAGSEEVAATVGSMAHIAGGVSEQTRQIRELTD 562 + V+A +EQ +A +EEV+AT M ++G V + + ++TD Sbjct: 520 VLTVTAISEQTAAATEEVSAT---MHEVSGNVDQFVSETEQVTD 560 >B1HYW9.1 B1HYW9_LYSSC Methyl-accepting chemotaxis protein Length = 588 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 164/600 (27%), Positives = 274/600 (45%), Gaps = 45/600 (7%) Query: 17 RLIARIFCVMTAVILCIAAGNIAIQWVNTGSAVKGTISSYNMNIASHYAAQADAGRFSDF 76 +L RI + +++ + A I S+V T+ + + +A + A + + Sbjct: 12 KLSNRIVLMSFVMLVALLAFFIVTTIYTAKSSVNKTMGAQAVAVAENIAKHLNPEEYEQL 71 Query: 77 LDDPQETDLYWSLRAELDQFRQSIGARYVYFVKIDEANQPL-LMIDGRPKGDPLASPINE 135 DP+E+ LYW LR EL++ R+ G Y Y + + ++ + ++DG P D E Sbjct: 72 SKDPRESKLYWQLREELNELREVNGVLYAYTFAVPQEDKKVRFLVDGMPADDE------E 125 Query: 136 NTDMPDAAVEAVLAGENASTPLIKNPE----------------YGDYISAYVPMRDGQGK 179 N A + GE +++ L K+ E +GDY+S VP++D G Sbjct: 126 N---------AGVIGEESASTLYKDIEKVMDAGSYYSDILHSGFGDYLSGTVPLKDASGN 176 Query: 180 LVGALGIDTDVAVLSTLTRDVLLQSLPXXXXXXXXXX-XXXXIMAWFVSRALRPLRTITE 238 +V +G+D + +S + VL LP IM +++RAL+PL + + Sbjct: 177 IVAFIGVDIEANEVSGVANAVLTAILPALIIVILILTGIVMLIMYRYINRALKPLAKLGD 236 Query: 239 SAGTMARGDLAEAARILHARPVKSRDEIGTAYQAMLRMSGDLNTRVEGIVSHVSTASDLL 298 + + A+GD+A+A+ + +K ++EI QA L + I T +++ Sbjct: 237 AVTSFAQGDIAKASMEVEKIQLKGKNEISIFAQAFQEALQKLKETFQTIQQQTFTLQNVV 296 Query: 299 YGSSETFARNADDVLRMSETVNGKIAD----IYAGASSQTEGAQSSALAIDEMAQGISRI 354 + D+ + ET N +IAD I AG+ Q + Q L ++EM+ GI R+ Sbjct: 297 --------KKIDETTQHVETSNAQIADRIVEIAAGSEQQQQNNQEVVLTMNEMSIGIQRL 348 Query: 355 XXXXXXXXXXXXXXLEIVDSSQAAMHQMNRQMKSISLSTGQTLETALLLQSYAEEIEGAL 414 +V++S ++ Q++++ S +T + + IE + Sbjct: 349 ADTTSEIAESSSTMTGLVETSVNHSQEVVSQIQNVESSVLRTAKHVEEMGDRFGSIEEMV 408 Query: 415 AAIRQFADQTKLLALNASIEAARAGEHGRGFTVVAGEVRKLAEGSAASVERVADLLLHIG 474 I ADQT LLALNA+IEAARAGE G+GF VVA EVRKLAE S AS + + L Sbjct: 409 TIITSIADQTNLLALNAAIEAARAGEAGKGFAVVADEVRKLAELSKASADEIHTHLNSFK 468 Query: 475 NASASIGTQMTDVSKEVKEGARMXXXXXXXXXXXXXXFREVAEQITDVSATAEQLSAGSE 534 + +M+ S +V+ G R EV +I D SA E++SAGSE Sbjct: 469 TITERALHEMSGSSIDVQAGNRAVQRIGESLEKILKSVVEVNNKIQDDSAVIEEMSAGSE 528 Query: 535 EVAATVGSMAHIAGGVSEQTRQIRELTDLQLEKIKEVYEASMTISANTSDMREAIRQVKV 594 E+ AT M IA + T+++ +DLQ+ + E+ E + ++ + I K+ Sbjct: 529 EILATTEQMNDIAQHSVQGTKEVAMASDLQVTMVSELNEVVAMLDQTFKEVTKTINTFKL 588 >B1YGG4.1 B1YGG4_EXIS2 Methyl-accepting chemotaxis sensory transducer Length = 582 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 163/561 (29%), Positives = 258/561 (45%), Gaps = 63/561 (11%) Query: 23 FCVMTAVILCIAAGNIAIQWVNTGSAVKGTISSYNMNIASHYAAQADAGRFSDFLDDPQE 82 F V ++V L + A+ S +K T + IA D+ + FL +P Sbjct: 24 FFVFSSVSLYLTTKQTAL------STLKKTAEQDALRIAK----TVDSDAYQTFLTNPTN 73 Query: 83 TDLYWSLRAELDQFRQSIGARYVYFVKIDEANQPLLMIDGRPKGDPLASPINEN-TDMPD 141 Y LR LDQ R+ G YVY KID+ LL IDG P D A+ IN+ T Sbjct: 74 DATYDQLRESLDQLRKQNGLLYVYTAKIDQGKVKLL-IDGLPIAD--AAKINDPATGAVA 130 Query: 142 AAVEAVLAGENASTPLIKNPEYGDYISAYVPMRDGQGKLVGALGIDTDVAVLSTLTRDVL 201 + ++ VL G+ +T +I +P+YG YIS YVP++ G ++G LG D + LT +L Sbjct: 131 SDMKEVLQGKTHATDVIDDPKYGKYISVYVPLKSPTGDIIGILGTDIAAKDVENLTSAML 190 Query: 202 LQSLPXXXXXXXXXXXXXX-IMAWFVSRALRPLRTITESAGTMARGDLAEAARILHARPV 260 QSLP ++ + + R L+PL T+ A +A G L +A + +H + Sbjct: 191 KQSLPLFIGLLVCLLAMTLGLLYYILGRKLKPLETLQSVAKMIADGKLDQAQQTMHHLKI 250 Query: 261 KSRDEIGTAYQAMLRMSGDLNTRVEGIVSHVSTASDLLYGSSETFARNADDVLRMSETVN 320 ++DEI A+ R +N + ++ ++ + L+ +S+ +VL S + Sbjct: 251 PAKDEI----YALARSIQQMNETLRTMIVDINRTTVLVTETSQAIDAGTTEVLDGSTQIA 306 Query: 321 GKIADIYAGASSQTEGAQSSALAIDEMAQGISRIXXXXXXXXXXXXXXLEIVDSS----Q 376 +++I G SQT ++ DEM G SR+ +E + S+ Q Sbjct: 307 ETMSEIATGTESQT---HTTLTLTDEMT-GFSRLVQKTAADSQEIEQTVETMRSTTQDGQ 362 Query: 377 AAMHQMNRQMKSISLSTGQTLETALLLQSYAEEIEGALAAIRQFADQTKLLALNASIEAA 436 M Q +M +I + E L+ + +I+ + IR A QT LLALNA+IEAA Sbjct: 363 TQMKQSVVRMNTIHAHVAEATEQVRQLKQQSSDIQALVTIIRDIAAQTNLLALNAAIEAA 422 Query: 437 RAGEHGRGFTVVAGEVRKLAEGSAASVERVADLLLHIGNASASIGTQMTDVSKEVKEGAR 496 RAGE G+GF VVA EV+KL+ A+SV+++A ++ +I S+ + + + +E G + Sbjct: 423 RAGEQGKGFAVVATEVKKLSTHVASSVDQIAAIVQNITGNSSQMEVRFAETLQETVSGQQ 482 Query: 497 MXXXXXXXXXXXXXXFREVAEQI----------------------------TDVSATAEQ 528 F +A Q+ T+++A AE+ Sbjct: 483 -------EIQATDNSFSHIAAQVGLVASSAAGMRQQMLAVARTEERIRSALTEIAAVAEE 535 Query: 529 LSAGSEEVAATVGSM-AHIAG 548 +AG+EEVAA M A I G Sbjct: 536 HTAGNEEVAAASEQMIATITG 556 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.128 0.346 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,729,404,272 Number of extensions: 100327422 Number of successful extensions: 372457 Number of sequences better than 1.0e-05: 12550 Number of HSP's gapped: 352142 Number of HSP's successfully gapped: 12603 Length of query: 594 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 452 Effective length of database: 1,722,912,073 Effective search space: 778756256996 Effective search space used: 778756256996 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 134 (56.2 bits)