BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0377.0012.p (773 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K9M4.1 B3K9M4_9BACI Sensor protein EC=2.7.13.3 546 e-153 B1DG34.1 B1DG34_9BACL Sensor protein EC=2.7.13.3 514 e-143 Q74AN8.1 Q74AN8_GEOSL Sensor protein EC=2.7.13.3 350 4e-94 B0ULC0.1 B0ULC0_METS4 Sensor protein EC=2.7.13.3 343 4e-92 B3KDJ6.1 B3KDJ6_9BACI Sensor protein EC=2.7.13.3 340 4e-91 >B3K9M4.1 B3K9M4_9BACI Sensor protein EC=2.7.13.3 Length = 642 Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust. Identities = 279/603 (46%), Positives = 400/603 (66%), Gaps = 15/603 (2%) Query: 182 CSPSVSEVLGYDSEQLVGRDIRGLIHPD-----DLAALHFPEAQDFQRVQIRVLHTDGRY 236 +P+ ++ GY E+L+ + I+ + D EA V+ +++H DG Sbjct: 36 VNPAACKMFGYTDEELMAQPATDYIYSECINNKDKLLRSLDEASSTIAVEKQLVHKDGNV 95 Query: 237 LWIEFTLRLIAEGT-QYSVLAVGR--DITERKIVEQKLQESVERYTSLKKYNHDAIISLD 293 +W + L+ + Q + + + DIT+ K+ EQKLQES+ERYTSLKKYNHDAIIS + Sbjct: 96 IWASIHVSLVRDDQDQTPLFFISQIVDITDSKVAEQKLQESIERYTSLKKYNHDAIISFN 155 Query: 294 LEGRIINGNEKACQLTGYSIPELAGMNVGRIIGAEHLGEVIAYSKEGSPAEVNIDHIWHR 353 LEGRIINGN+ A QLTG+ IPEL G + +IG +L V++ + + AE I+ I H+ Sbjct: 156 LEGRIINGNQMAEQLTGFKIPELIGTKISNLIGERNLARVLSSAADYVAAEKGINCIHHK 215 Query: 354 EGYSVEVLTTIAPIIINQETVGLYIIAKDITDQXXXXXXXXXXXXTNRAKSEFLAMMSHE 413 +G+ VEVL T+API+I+ + VG YIIAKD+T+Q TN+AKSEFLAMMSHE Sbjct: 216 DGHQVEVLATLAPIVIHGKNVGFYIIAKDMTEQKRLIIEKEAAEKTNKAKSEFLAMMSHE 275 Query: 414 IRTPMNGVIGMTDLLLEMSEPGSLQREYLDIIRQSGDTLLAIINDVLDFSKIEAGKTILH 473 IRTPMNGVIGMTDL+LE +E QREY+ II++SG TLL IIND+LDFSKIE+G+T L Sbjct: 276 IRTPMNGVIGMTDLILE-TELDEEQREYVQIIKKSGTTLLNIINDILDFSKIESGRTELV 334 Query: 474 EEPFMLMPCVDSVLELLQHKADKKGLKIEVSIGPDVPEHLIGDGERLKQILLNLVGNAVK 533 EE F L + L ++ KA K +++ S+ DVP + GD +L+Q+L+NL+ NA+K Sbjct: 335 EETFSLRTALSETLNMILPKALDKNIEVTTSVASDVPNQVYGDVTKLRQVLMNLLSNAIK 394 Query: 534 FTYTGGIKVTLRVLARAGGSVTLEFTVADTGIGIPESSRSRLFEPFYQLDHFIDRRHEGT 593 FT G + ++++ + S ++F+V DTGIG+P ++LFEPFYQ+DH++ R+ EGT Sbjct: 395 FTPNGAVSISVQCVRDQANSKLIQFSVTDTGIGVPSEKIAQLFEPFYQVDHYMTRQVEGT 454 Query: 594 GLGLAITRQLVEMMGGSIALDTTV-ETGASFVFTV--KLREESGSLPDSASGTEGDEALS 650 GLGLAI ++LV++MGG I + + G+ F FTV +G++P++ + E S Sbjct: 455 GLGLAICKKLVQLMGGDIWYERNPNQQGSVFTFTVDFSFNANAGNMPEAGTVHENH---S 511 Query: 651 GERSLRILVAEDNEINQIVLRKILEKRGYSVDVAGDGLQVMEMAREQSYDLIFMDVQMPR 710 L+IL+AEDNE+NQ+VL+K++EK GY+ +GL+ +E + YD++FMD+QMP Sbjct: 512 DGSDLKILIAEDNEVNQLVLKKMIEKLGYNSTTVLNGLEAVEAFKRYPYDMVFMDIQMPF 571 Query: 711 MNGLEATQAIKETLPPDKQPVIIAVTANALKGDRELCLAAGMDEYISKPLRSEAITNIVG 770 M+G+EA Q IKE+ PPD QP I+AVTA+A+KGDRE L GMDEY+SKP+ I+ I+ Sbjct: 572 MDGMEAVQLIKESAPPDHQPYIVAVTAHAIKGDREKYLGMGMDEYVSKPVSLNVISAIID 631 Query: 771 KFF 773 +F Sbjct: 632 RFL 634 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/256 (21%), Positives = 111/256 (43%), Gaps = 8/256 (3%) Query: 31 FEHACKTGMIGVAFLSVNGQWTSVNPAVTSLLGFTKEQLLSQHLRELVCEDSLESYAAMV 90 FEH K+ IG+A +++ G W SVNPA + G+T E+L++Q + + + + + ++ Sbjct: 13 FEHVYKSAPIGIALVTIEGSWISVNPAACKMFGYTDEELMAQPATDYIYSECINNKDKLL 72 Query: 91 RALDAGEAPFAECAVHLSSASGARVPVQLHMTLISNPSTGEKLYYLIHIXXXXXXXXXXX 150 R+LD + A L G + +H++L+ + L+++ I Sbjct: 73 RSLDEASSTIA-VEKQLVHKDGNVIWASIHVSLVRDDQDQTPLFFISQIVDITDSKVAEQ 131 Query: 151 XXSPVDKLYRQIVANISDVVYYATSDNICRYCSPSVSEVLGYDSEQLVGRDIRGLIHPDD 210 + Y + D + + + ++ G+ +L+G I LI + Sbjct: 132 KLQESIERYTSLKKYNHDAIISFNLEGRIINGNQMAEQLTGFKIPELIGTKISNLIGERN 191 Query: 211 LAALHFPEAQDFQRVQ--IRVL-HTDGRYLWIEFTLR-LIAEGTQYSVLAVGRDITERK- 265 LA + A D+ + I + H DG + + TL ++ G + +D+TE+K Sbjct: 192 LARV-LSSAADYVAAEKGINCIHHKDGHQVEVLATLAPIVIHGKNVGFYIIAKDMTEQKR 250 Query: 266 -IVEQKLQESVERYTS 280 I+E++ E + S Sbjct: 251 LIIEKEAAEKTNKAKS 266 >B1DG34.1 B1DG34_9BACL Sensor protein EC=2.7.13.3 Length = 642 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 276/600 (46%), Positives = 385/600 (64%), Gaps = 13/600 (2%) Query: 182 CSPSVSEVLGYDSEQLVGRDIRGLIHPDDLAALHFPEAQDFQ------RVQIRVLHTDGR 235 +P+ ++LG+ +L+ D LI L Q + ++ R L DG Sbjct: 35 VNPAACQILGHKRSELMTLDPAELIFSSRRENLSRKFKQLLEGKIPTLNLEKRYLLKDGA 94 Query: 236 YLWIEFTLRLIAEGTQ---YSVLAVGRDITERKIVEQKLQESVERYTSLKKYNHDAIISL 292 +W+ + L+ +G+ + +A DIT K+ EQKLQESVERYTSLKKYNHD IIS Sbjct: 95 IVWVSLHISLVRDGSDGQPWYYIAQIVDITATKMSEQKLQESVERYTSLKKYNHDTIISF 154 Query: 293 DLEGRIINGNEKACQLTGYSIPELAGMNVGRIIGAEHLGEVIAYSKEGSPAEVNIDHIWH 352 DL+G+II GN A +LTG + EL G ++ +IG + L ++A ++ + E +I+ + H Sbjct: 155 DLQGKIIGGNVMAEKLTGRLVSELIGTSIASVIGEDKLARILADNEPYTEIESSINDVLH 214 Query: 353 REGYSVEVLTTIAPIIINQETVGLYIIAKDITDQXXXXXXXXXXXXTNRAKSEFLAMMSH 412 +G VEVL TIAPII+N ++G Y++ KDIT+Q TN KSEF+AMMSH Sbjct: 215 VDGSYVEVLVTIAPIIVNNRSIGFYLLIKDITEQKKLLIEKETAVRTNEVKSEFMAMMSH 274 Query: 413 EIRTPMNGVIGMTDLLLEMSEPGSLQREYLDIIRQSGDTLLAIINDVLDFSKIEAGKTIL 472 EIRTPMNGVIGMTDLLL+ + Q+EY+ IIR+SG+TLL IIND+LDFSK+E+G L Sbjct: 275 EIRTPMNGVIGMTDLLLD-TPLDEEQKEYVTIIRKSGETLLGIINDILDFSKVESGNAEL 333 Query: 473 HEEPFMLMPCVDSVLELLQHKADKKGLKIEVSIGPDVPEHLIGDGERLKQILLNLVGNAV 532 EEPF L + + L KA +K L+ +V I P +P+++IGD +++QI+LNL+GNA+ Sbjct: 334 TEEPFNLNTAIAETFDTLMPKAMEKNLEFKVCISPGIPQNIIGDSLKIRQIMLNLIGNAI 393 Query: 533 KFTYTGGIKVTLRVLARAGGSVTLEFTVADTGIGIPESSRSRLFEPFYQLDHFIDRRHEG 592 KFT G I V++ G +V L F V DTGIG+PE LFEPFYQ DHF+ R+ G Sbjct: 394 KFTPRGSIGVSIDKAEAEGANVRLHFAVKDTGIGVPEDKVPYLFEPFYQADHFMVRQEGG 453 Query: 593 TGLGLAITRQLVEMMGGSIALDTTVETGASFVFTVKLREE-SGSLPDSASGTEGDEALSG 651 TGLGLAITR+LV++M G I + G F F + ++ E S+P S TE +A Sbjct: 454 TGLGLAITRKLVQLMDGQIYCEPNPGGGTIFRFHILIQAELLTSIPVHESITE--KAPQP 511 Query: 652 ERSLRILVAEDNEINQIVLRKILEKRGYSVDVAGDGLQVMEMAREQSYDLIFMDVQMPRM 711 E L IL+AEDNE+N++VL ++LEK GY +G +V+E R + YD++FMD+QMP M Sbjct: 512 EEELSILIAEDNEVNRLVLIRMLEKLGYRPKAVSNGAEVVEEVRRKKYDIVFMDIQMPVM 571 Query: 712 NGLEATQAIKETLPPDKQPVIIAVTANALKGDRELCLAAGMDEYISKPLRSEAITNIVGK 771 NG+EA++ +++T+ P P I+AVTANAL GDRE ++AGM+EYISKPL S A+ ++ K Sbjct: 572 NGMEASKILRKTIEPGNLPYIVAVTANALVGDRERYMSAGMNEYISKPLHSSAVLTVIQK 631 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 55/239 (23%), Positives = 98/239 (41%), Gaps = 5/239 (2%) Query: 31 FEHACKTGMIGVAFLSVNGQWTSVNPAVTSLLGFTKEQLLSQHLRELVCEDSLESYAAMV 90 F H IG+A +S++ +W VNPA +LG + +L++ EL+ E+ + Sbjct: 12 FAHVFNYAPIGIALISLDRRWIDVNPAACQILGHKRSELMTLDPAELIFSSRRENLSRKF 71 Query: 91 RALDAGEAPFAECAVHLSSASGARVPVQLHMTLISNPSTGEKLYYLIHIXXXXXXXXXXX 150 + L G+ P GA V V LH++L+ + S G+ YY+ I Sbjct: 72 KQLLEGKIPTLNLEKRYLLKDGAIVWVSLHISLVRDGSDGQPWYYIAQIVDITATKMSEQ 131 Query: 151 XXSPVDKLYRQIVANISDVVYYATSDNICRYCSPSVSEVLGYDSEQLVGRDIRGLIHPDD 210 + Y + D + + ++ G +L+G I +I D Sbjct: 132 KLQESVERYTSLKKYNHDTIISFDLQGKIIGGNVMAEKLTGRLVSELIGTSIASVIGEDK 191 Query: 211 LAALHFPEAQDFQRVQIR---VLHTDGRYLWIEFTLR-LIAEGTQYSVLAVGRDITERK 265 LA + + + + ++ VLH DG Y+ + T+ +I + +DITE+K Sbjct: 192 LARI-LADNEPYTEIESSINDVLHVDGSYVEVLVTIAPIIVNNRSIGFYLLIKDITEQK 249 >Q74AN8.1 Q74AN8_GEOSL Sensor protein EC=2.7.13.3 Length = 982 Score = 350 bits (898), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 228/606 (37%), Positives = 333/606 (54%), Gaps = 26/606 (4%) Query: 187 SEVLGYDSEQLVGRDIRGLI-HPDDLAAL--HFPEAQDFQRVQIRVLHTDGRYLWIEFTL 243 +++ GY E+L G ++ L+ HPDD+ ++ A + Q+R + DG +E Sbjct: 247 AKLFGYPREELEGINVISLLFHPDDIGSMIDKMSRAHS-EPYQVRGVKKDGTVFDVEIEG 305 Query: 244 RLIAEGTQYSVLAVGRDITERKIVEQKLQESVERYTSLKKYNHDAIISLDLE---GRIIN 300 + G + + RDITER+ E+ L++S + +L + H A + L ++ G I++ Sbjct: 306 YNLQHGDKSVRVVSVRDITERRRAEEALRQSEALFRNL--FEHHAAVKLIIDPVSGAIVD 363 Query: 301 GNEKACQLTGYSIPELAGMNVGRI--IGAEHLGEVIAYSKEGSPAEVNIDHIWHREGYSV 358 N A G+S +L MN+ I + E L + +K H R SV Sbjct: 364 ANNAAVSFYGWSREQLRAMNIRDINMLSPEELVSELENTKNMERIHFFFRH--RRADDSV 421 Query: 359 EVLTTIAPIIINQETVGLYIIAKDITDQXXXXX----XXXXXXXTNRAKSEFLAMMSHEI 414 + + I + L+ I D+T++ NRAKSEFLA MSHEI Sbjct: 422 RDVEVFSSRIEVKGREYLHSIVHDVTERKRAEEELLLAKEQAESANRAKSEFLANMSHEI 481 Query: 415 RTPMNGVIGMTDLLLEMSEPGSLQREYLDIIRQSGDTLLAIINDVLDFSKIEAGKTILHE 474 RTPMNGVIGMT LLLE QR Y +I+R S +LL +I+D+LDFSKIEAG+ + Sbjct: 482 RTPMNGVIGMTGLLLETGLADE-QRRYAEIVRTSAASLLQVIDDILDFSKIEAGRLEMET 540 Query: 475 EPFMLMPCVDSVLELLQHKADKKGLKIEVSIGPDVPEHLIGDGERLKQILLNLVGNAVKF 534 F L +D + E L KA++KGL + P+VP L+GD RLKQ+L+NL GNA+KF Sbjct: 541 IGFDLRTLLDDLAESLAFKANEKGLTFTCLLRPEVPRFLMGDPVRLKQVLVNLAGNALKF 600 Query: 535 TYTGGIKVTLRVLARAGGSVTLEFTVADTGIGIPESSRSRLFEPFYQLDHFIDRRHEGTG 594 T+ G I V + L + G SV L F V DTGIGIP LFE F Q D I R++ GTG Sbjct: 601 THQGEISVEVGSLTKTGDSVKLRFAVRDTGIGIPPEKTELLFEKFTQADASITRKYGGTG 660 Query: 595 LGLAITRQLVEMMGGSIALDTTVETGASFVFTV-----KLREESGSLPDSASGTEGDEAL 649 LGLAI ++LV+MMGG I + + G+ F FT LR+ S PD G + Sbjct: 661 LGLAICKRLVQMMGGEIGVTSRPGVGSEFWFTASFGTQNLRDSSPE-PDGGDGPLQLLSD 719 Query: 650 SGERSLRILVAEDNEINQIVLRKILEKRGYSVDVAGDGLQVMEMAREQSYDLIFMDVQMP 709 G +RIL+ EDN N+ V I+++ G D A +G + +++ YDL+ MDVQMP Sbjct: 720 LGHDDVRILLVEDNATNRQVALGIIKRLGLRGDAAANGAEALDLLATTPYDLVLMDVQMP 779 Query: 710 RMNGLEATQAIKETLPP--DKQPVIIAVTANALKGDRELCLAAGMDEYISKPLRSEAITN 767 M+G EAT+ I++ P + + +IA+TA+A+KGDR CL AGM++Y++KP+ +A+ Sbjct: 780 VMDGFEATRHIRDVRSPVLNHEIPVIALTAHAMKGDRRKCLDAGMNDYLAKPIFPDALAE 839 Query: 768 IVGKFF 773 ++ K+ Sbjct: 840 MLVKWL 845 >B0ULC0.1 B0ULC0_METS4 Sensor protein EC=2.7.13.3 Length = 1596 Score = 343 bits (880), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 253/770 (32%), Positives = 382/770 (49%), Gaps = 77/770 (10%) Query: 48 NGQWTSVNPAVTSLLGFTKEQLLSQHLRELVCEDSLESYAAMVRALDAGEAPFAECAVHL 107 +G V+PA+ ++LG+ E ++ L+ + + AA+ A+DA P A L Sbjct: 733 DGALLYVSPAIRTVLGYAPEDFAARPAESLLHPEDRDRVAAVTAAIDAAR-PTATSVHRL 791 Query: 108 SSASGARVPVQLHMTLISNP-STGEKLYYLIHIXXXXXXXXXXXXXSPVDKLYRQIVANI 166 G V V+ +T + + G ++ + S + LYR + Sbjct: 792 RHRDGHWVFVETALTWMQGEGARGARILAAMRDVSRRVAAEAAVRES--EMLYRLLAETT 849 Query: 167 SDVVYYATSDNICRYCSPSVSEVLGYDSEQLVGRDIRGLIHPDDLAALHFPEAQDFQR-- 224 SDV+ +Y SP+ VLGY+ E L+ + ++HPDDL AL QD R Sbjct: 850 SDVITRLDLGLAWQYVSPACRAVLGYEPEDLLRQRPSAVVHPDDLPAL-----QDLARRL 904 Query: 225 -----------VQIRVLHTDGRYLWIEFTLRLIAE--GTQYSVLAVGRDITERKIVEQKL 271 R H G ++W E L L+ + G S++ RD+T RK E L Sbjct: 905 AAGEIAGEHVTTTFRTRHGRGGFVWTEAGLSLMRDEGGAPVSIVCSLRDVTARKAAEAAL 964 Query: 272 QESVERYTSLKKYNHDAIISLDLEGRIINGNEKACQLTGYSIPELAGMNVGRIIGAEHLG 331 + S RY L + D I+ D + + AC+ E+ G I+G + L Sbjct: 965 EASEARYRFLSENGSDMIVQADRDS-VRRYVSPACR-------EILGYEPEEIVGTKPLD 1016 Query: 332 EV---------------------IAYSKE------GS--PAEVNIDHIWHREGYSVEVLT 362 V +A S++ GS E + EG + + Sbjct: 1017 GVHPDDRAALAATLADLAAGTRDVATSRQRYRRRDGSYVWVEAKFRLLRDAEGRAEGYVA 1076 Query: 363 TIAPIIINQETVGLYIIAKDITDQXXXXXXXXXXXXTNRAKSEFLAMMSHEIRTPMNGVI 422 ++ + Q +A+D +Q +RAK++FLA MSHEIRTP+NG++ Sbjct: 1077 SVRDVSERQRQAEALELARDAAEQ------------ASRAKTDFLASMSHEIRTPLNGIL 1124 Query: 423 GMTDLLLEMSEPGSLQREYLDIIRQSGDTLLAIINDVLDFSKIEAGKTILHEEPFMLMPC 482 G TDLLL+ G QR + I+ +G LL I+ND+LDFSKIEAG+ L +PF+L Sbjct: 1125 GYTDLLLDDPSLGGGQRRQAERIQSAGAALLTIVNDILDFSKIEAGQIELDPQPFLLDAL 1184 Query: 483 VDSVLELLQHKADKKGLKIEVSIGPDVPEHLIGDGERLKQILLNLVGNAVKFTYTGGIKV 542 +D+ + +++ A KK + + V + P L+GD +RL+QILLNL+ NAVKFT+ G + + Sbjct: 1185 LDNTVSVVRGFARKKAIAVAVRLDGAAPRTLVGDQDRLRQILLNLLNNAVKFTHAGSVTL 1244 Query: 543 TLRVLARAGGSVTLEFTVADTGIGIPESSRSRLFEPFYQLDHFIDRRHEGTGLGLAITRQ 602 + + G + L F V+DTGIGIP RLF+ F Q+D+ I R GTGLGLAI++ Sbjct: 1245 AVACESPPGATACLRFAVSDTGIGIPRDKHERLFQRFSQVDNSIRRDFGGTGLGLAISKN 1304 Query: 603 LVEMMGGSIALDTTVETGASFVFTVKLREESGSLPDSASGTEGDEALSGERSLRILVAED 662 LVE+MGG+I +++ V G +F FTV L +A G L RIL+ ED Sbjct: 1305 LVELMGGTIGVESVVSEGTTFWFTVTLPVGGAVAAPAAPGRAALAQLPA----RILLVED 1360 Query: 663 NEINQIVLRKILEKRGYSVDVAGDGLQVMEMAREQSYDLIFMDVQMPRMNGLEATQAIKE 722 EINQ + R +LE G+ VDVA DGL+ + + +S+DL+ MDVQMP M+GL AT+ I+ Sbjct: 1361 LEINQDIARAVLEAAGHEVDVASDGLEAIVAVQAKSFDLVLMDVQMPGMDGLTATRHIRA 1420 Query: 723 TLPPDKQPVIIAVTANALKGDRELCLAAGMDEYISKPLRSEAITNIVGKF 772 PP I+A+TAN L AAGMD+++ KP + + + +V ++ Sbjct: 1421 LRPPVCTVPIVAMTANVLPAQIAEFRAAGMDDHVGKPFKRDDLHRVVARW 1470 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 90/206 (43%), Gaps = 19/206 (9%) Query: 159 YRQIVANISDVV--YYATSDNICRYCSPSVSEVLGYDSEQLVGRDIRGLIHPDD------ 210 +R I N+SDV+ A D Y SP++ VLGY E R L+HP+D Sbjct: 714 HRLIAENVSDVITLRRAGGDGALLYVSPAIRTVLGYAPEDFAARPAESLLHPEDRDRVAA 773 Query: 211 ---LAALHFPEAQDFQRVQIRVLHTDGRYLWIEFTLRLI-AEGTQYS-VLAVGRDITERK 265 P A R++ H DG ++++E L + EG + + +LA RD++ R Sbjct: 774 VTAAIDAARPTATSVHRLR----HRDGHWVFVETALTWMQGEGARGARILAAMRDVSRRV 829 Query: 266 IVEQKLQESVERYTSLKKYNHDAIISLDLEGRIINGNEKACQ-LTGYSIPELAGMNVGRI 324 E ++ES Y L + D I LDL G AC+ + GY +L + Sbjct: 830 AAEAAVRESEMLYRLLAETTSDVITRLDL-GLAWQYVSPACRAVLGYEPEDLLRQRPSAV 888 Query: 325 IGAEHLGEVIAYSKEGSPAEVNIDHI 350 + + L + ++ + E+ +H+ Sbjct: 889 VHPDDLPALQDLARRLAAGEIAGEHV 914 >B3KDJ6.1 B3KDJ6_9BACI Sensor protein EC=2.7.13.3 Length = 559 Score = 340 bits (872), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 180/375 (48%), Positives = 244/375 (65%), Gaps = 3/375 (0%) Query: 401 RAKSEFLAMMSHEIRTPMNGVIGMTDLLLEMSEPGSLQREYLDIIRQSGDTLLAIINDVL 460 +AK+EFLAMMSHEIRTPMNGVIGM DLL++ SE QREY IIR S D L+ IIND+L Sbjct: 167 KAKTEFLAMMSHEIRTPMNGVIGMIDLLMD-SELQDEQREYATIIRNSADALVNIINDIL 225 Query: 461 DFSKIEAGKTILHEEPFMLMPCVDSVLELLQHKADKKGLKIEVSIGPDVPEHLIGDGERL 520 DFSK+E+GK L E PF L CV V L +A KK L++ I +P + GD RL Sbjct: 226 DFSKMESGKMELEEYPFDLKSCVQEVFGLFSGEASKKNLELTYYIEDQIPSMVFGDMGRL 285 Query: 521 KQILLNLVGNAVKFTYTGGIKVTLRVLARAGGSVTLEFTVADTGIGIPESSRSRLFEPFY 580 +Q+L+NLV NAVKFT GG+ + + + +TLEFTV DTGIGI RLF+PF Sbjct: 286 RQVLVNLVSNAVKFTNEGGVYLVVSLAKAEENRLTLEFTVKDTGIGISSKKLDRLFKPFS 345 Query: 581 QLDHFIDRRHEGTGLGLAITRQLVEMMGGSIALDTTVETGASFVFTVKLREESGSLPDSA 640 QLD + RR+ GTGLGLAI + LV+MMGG I +D+ GA+FVFT+ + P Sbjct: 346 QLDSSMTRRYGGTGLGLAICKSLVQMMGGEIEVDSKEGEGATFVFTICVHTHEEEHPRLR 405 Query: 641 SGTEGDE-ALSGERSLRILVAEDNEINQIVLRKILEKRGYSVDVAGDGLQVMEMAR-EQS 698 D+ + G R IL+ +D+ IN+ ++ +LEK G D+A DG Q +EMA ++ Sbjct: 406 EEEHSDKYRVHGGRQPNILIVDDHPINRKLMESMLEKMGMIADMAEDGRQAVEMAAGPKA 465 Query: 699 YDLIFMDVQMPRMNGLEATQAIKETLPPDKQPVIIAVTANALKGDRELCLAAGMDEYISK 758 YD+IFMD+QMP M+GLEA + I++ P PV+IA+TAN + G ++ C AGM+EYISK Sbjct: 466 YDMIFMDLQMPVMDGLEAARLIRQMKPEADAPVLIAMTANVMDGIQKRCFDAGMNEYISK 525 Query: 759 PLRSEAITNIVGKFF 773 P++ + +++ ++ Sbjct: 526 PVKISCVKHLISRYM 540 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 4,325,243,969 Number of extensions: 177455666 Number of successful extensions: 689907 Number of sequences better than 1.0e-05: 39250 Number of HSP's gapped: 624842 Number of HSP's successfully gapped: 42491 Length of query: 773 Length of database: 3,060,696,203 Length adjustment: 144 Effective length of query: 629 Effective length of database: 1,704,070,043 Effective search space: 1071860057047 Effective search space used: 1071860057047 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 135 (56.6 bits)