BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0377.0011.p (129 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3PDK1.1 B3PDK1_CELJU Sensor protein EC=2.7.13.3 82 1e-14 Q0F1G7.1 Q0F1G7_9PROT Sensor protein EC=2.7.13.3 80 7e-14 Q0KDE6.1 Q0KDE6_RALEH Sensor protein EC=2.7.13.3 80 8e-14 Q46MC0.1 Q46MC0_RALEJ Sensor protein EC=2.7.13.3 78 2e-13 Q31DW5.1 Q31DW5_THICR Sensor protein EC=2.7.13.3 77 5e-13 >B3PDK1.1 B3PDK1_CELJU Sensor protein EC=2.7.13.3 Length = 668 Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 44/118 (37%), Positives = 66/118 (55%), Gaps = 1/118 (0%) Query: 8 VLYVEDNQLNMALMHHIFKKNLPSVRLLKAETAALGLQIARQMXXXXXXXXXXXXXXNGY 67 +LYVEDN N+ L+ IF + P + L AE A LG+ AR + +GY Sbjct: 550 ILYVEDNPTNIRLLQQIFAR-YPQLSLDIAEEAFLGIYKARSLLPDAIILDINLPGMDGY 608 Query: 68 EAMDQLKNDELTRPIPVLAISAFAQRSDIERARKTGFSGYITKPFQVKALTEAVERLL 125 E ++ L+ D+LT+ IP++ +SA A DIER + GF Y+TKP Q+ L + ++L Sbjct: 609 EVLNVLRRDDLTKEIPIIGLSANAMPYDIERGKSAGFFDYLTKPVQINQLIGVLNQVL 666 >Q0F1G7.1 Q0F1G7_9PROT Sensor protein EC=2.7.13.3 Length = 701 Score = 80.1 bits (196), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 47/120 (39%), Positives = 63/120 (52%), Gaps = 1/120 (0%) Query: 7 TVLYVEDNQLNMALMHHIFKKNLPSVRLLKAETAALGLQIARQMXXXXXXXXXXXXXXNG 66 T+LY+EDN NM L+ I ++ P++ LL A T G+ A + NG Sbjct: 567 TLLYIEDNPANMKLVEQITARH-PNISLLTAATGNSGIDTACEALPDLILMDINLPDING 625 Query: 67 YEAMDQLKNDELTRPIPVLAISAFAQRSDIERARKTGFSGYITKPFQVKALTEAVERLLA 126 +EA++ L+ D T IPV+AISA A DIER K GF YITKP +V A+ L Sbjct: 626 FEALNILREDPATTHIPVIAISANAMPEDIERGLKAGFFRYITKPIKVDEFINALSEALG 685 >Q0KDE6.1 Q0KDE6_RALEH Sensor protein EC=2.7.13.3 Length = 569 Score = 79.7 bits (195), Expect = 8e-14, Method: Composition-based stats. Identities = 49/128 (38%), Positives = 68/128 (53%), Gaps = 5/128 (3%) Query: 6 QTVLYVEDNQLNMALMHHIFKKNLPSVRLLKAETAALGLQIARQMXXXXXXXXXXXXXXN 65 T+LYVEDN N+ L+ + + V LL A T LG+++AR N Sbjct: 441 HTLLYVEDNPANLKLLEQLLARR-ADVHLLSAATGILGVELARTSLPDAIVMDIHLPDIN 499 Query: 66 GYEAMDQLKNDELTRPIPVLAISAFAQRSDIERARKTGFSGYITKPFQV----KALTEAV 121 G EA+ +L+ D +T IPV+A+SA A DIER K GF Y+TKP ++ AL A+ Sbjct: 500 GIEALGRLREDPMTMHIPVIALSANAMPRDIERGMKAGFFRYLTKPIRIHEFMDALNAAL 559 Query: 122 ERLLAGIA 129 E+ IA Sbjct: 560 EQPRGSIA 567 >Q46MC0.1 Q46MC0_RALEJ Sensor protein EC=2.7.13.3 Length = 404 Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/126 (38%), Positives = 67/126 (53%), Gaps = 5/126 (3%) Query: 6 QTVLYVEDNQLNMALMHHIFKKNLPSVRLLKAETAALGLQIARQMXXXXXXXXXXXXXXN 65 T+LYVEDN N+ L+ + + P VRLL A T LG+++AR N Sbjct: 275 HTLLYVEDNPANLKLVEQLIARR-PDVRLLTAVTGTLGVELARTSLPDLILMDIHLPDIN 333 Query: 66 GYEAMDQLKNDELTRPIPVLAISAFAQRSDIERARKTGFSGYITKPFQ----VKALTEAV 121 G EA+ L+ D T IPV+A+SA A DIE+ K GF Y+TKP + + AL A+ Sbjct: 334 GIEALRLLREDPKTARIPVIALSANAMPRDIEKGIKAGFFRYLTKPIKLNEFIDALNAAL 393 Query: 122 ERLLAG 127 E+ G Sbjct: 394 EQPQGG 399 >Q31DW5.1 Q31DW5_THICR Sensor protein EC=2.7.13.3 Length = 948 Score = 77.0 bits (188), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 1/121 (0%) Query: 6 QTVLYVEDNQLNMALMHHIFKKNLPSVRLLKAETAALGLQIARQMXXXXXXXXXXXXXXN 65 +T+LY+EDN N+ L+ H+ K L+ A LG+++A+ + Sbjct: 824 KTILYIEDNPANLKLVSHVLAKR-DHTNLITAHEPQLGIELAKANKPDLILLDINMPGMS 882 Query: 66 GYEAMDQLKNDELTRPIPVLAISAFAQRSDIERARKTGFSGYITKPFQVKALTEAVERLL 125 GYE ++ K D +PV+AI+A A DI R ++ GF Y+TKP V+ + VER L Sbjct: 883 GYEVLEVFKKDSDVSKVPVVAITANAMSHDIRRGKRAGFDDYLTKPLDVENFLKVVERYL 942 Query: 126 A 126 Sbjct: 943 T 943 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.134 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 569,268,252 Number of extensions: 16059288 Number of successful extensions: 74512 Number of sequences better than 1.0e-05: 301 Number of HSP's gapped: 75822 Number of HSP's successfully gapped: 301 Length of query: 129 Length of database: 3,060,696,203 Length adjustment: 94 Effective length of query: 35 Effective length of database: 2,175,120,793 Effective search space: 76129227755 Effective search space used: 76129227755 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)