BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0377.0010.p (172 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D730.1 B1D730_9BACL Putative uncharacterized protein 152 8e-36 B1D729.1 B1D729_9BACL Putative uncharacterized protein 133 5e-30 Q2B3R3.1 Q2B3R3_9BACI Putative uncharacterized protein 131 2e-29 A6CNS8.1 A6CNS8_9BACI Putative uncharacterized protein 121 2e-26 Q2B3R1.1 Q2B3R1_9BACI Putative uncharacterized protein 110 5e-23 >B1D730.1 B1D730_9BACL Putative uncharacterized protein Length = 233 Score = 152 bits (385), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 70/172 (40%), Positives = 117/172 (68%), Gaps = 3/172 (1%) Query: 1 LLNKEEEQAFRYTRELLMKSLLPELSAYLKDTMAIEVGELFYDWGIHNASGIIVALIKND 60 LL +++ + ++TR+L+MKSL+PE+ AYL + + E +YDWG HN SG++V + +D Sbjct: 55 LLQQDQVNSVQHTRDLVMKSLMPEIKAYLLLLAGMNIREFYYDWGFHNHSGMLVGIEADD 114 Query: 61 DVAI---DDYAGRDEVHAQINEVSRKVQKEPVHTDSWWLGPRTLIIKREGILIPLEKELI 117 + + YAG++E+H +I+ +S ++QK+P T S+ + RTL++ R GILI + KELI Sbjct: 115 SLEFRLQERYAGKEELHDEIDRISHQIQKKPDETYSYMINDRTLLVVRTGILISIGKELI 174 Query: 118 GLGYENTLKTTKRKMEKRYLEGTTTIAPMLGKELADIYVDWDFDKDTSVIAY 169 LG+E +LK +R +EK YL ++ ++ ++AD++VDWDF +D SVI + Sbjct: 175 RLGFEESLKLAERNLEKSYLINSSRFQEIIKSQIADVFVDWDFHEDKSVIVF 226 >B1D729.1 B1D729_9BACL Putative uncharacterized protein Length = 230 Score = 133 bits (335), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 65/173 (37%), Positives = 106/173 (61%), Gaps = 4/173 (2%) Query: 1 LLNKEEEQAFRYTRELLMKSLLPELSAYLKDTMAIEVGELFYDWGIHNASGIIVALIKND 60 LL +++ + + TR+LLMKSL+PE+ AYL +++ E +YDW +HN SG++V + Sbjct: 52 LLEQDQIHSIQSTRDLLMKSLIPEIKAYLLVLAGMDIQEFYYDWSLHNQSGVMVGIEAGH 111 Query: 61 D----VAIDDYAGRDEVHAQINEVSRKVQKEPVHTDSWWLGPRTLIIKREGILIPLEKEL 116 D +Y G+ E+ +++ +S++VQK P S + RTL++ R GILI +EKEL Sbjct: 112 DQEPAFLGCEYTGKTELQHEVSTISQQVQKRPDELYSCLINDRTLLVIRVGILISIEKEL 171 Query: 117 IGLGYENTLKTTKRKMEKRYLEGTTTIAPMLGKELADIYVDWDFDKDTSVIAY 169 I +G+E +L+ KR +EK +L L ++ D++VDWDF D SV+ + Sbjct: 172 IRIGHEESLRLAKRNLEKSHLHNNGHFQQFLNAKVIDLFVDWDFHLDKSVMVF 224 >Q2B3R3.1 Q2B3R3_9BACI Putative uncharacterized protein Length = 232 Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 63/173 (36%), Positives = 106/173 (61%), Gaps = 4/173 (2%) Query: 1 LLNKEEEQAFRYTRELLMKSLLPELSAYLKDTMAIEVGELFYDWGIHNASGIIV----AL 56 LL++ ++ TRE LMKSL PE+ +K I++ ++YDW + +G+ V ++ Sbjct: 53 LLDQGQDLTVLTTREYLMKSLDPEMRGQIKAITDIDIQHMYYDWNLDRQTGVFVGVGPSI 112 Query: 57 IKNDDVAIDDYAGRDEVHAQINEVSRKVQKEPVHTDSWWLGPRTLIIKREGILIPLEKEL 116 + + DY G+ +VH +I +SR+ +K P +S+ LG RTL++ REGIL+P+EK+L Sbjct: 113 VAEGKDSESDYKGKKKVHEEIISISRQAEKAPDRVESYMLGSRTLVVIREGILVPIEKQL 172 Query: 117 IGLGYENTLKTTKRKMEKRYLEGTTTIAPMLGKELADIYVDWDFDKDTSVIAY 169 I LG+ TL+ KR++E L + +L + D++VDW+F+ D SVI++ Sbjct: 173 IALGFVETLRVAKRQLEGELLSNDIHFSAILEAGIQDVFVDWNFELDNSVISF 225 >A6CNS8.1 A6CNS8_9BACI Putative uncharacterized protein Length = 236 Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 66/177 (37%), Positives = 105/177 (59%), Gaps = 6/177 (3%) Query: 1 LLNKEEEQAFRYTRELLMKSLLPELSAYLKDTMAIEVGELFYDWGIHNASGIIVALIKND 60 L++ ++ + TR+L+M++L E+ AY++ T V E +YDW + +G+++A++ + Sbjct: 53 LMDSDQTVYVQKTRDLMMETLTKEIKAYIELTQGHHVEEFYYDWQLEAKTGMMIAVLSSP 112 Query: 61 D-----VAIDDYAGRDEVHAQINEVSRKVQKEPVHTDSWWLGPRTLIIKREGILIPLEKE 115 D +D+ D V+ I ++S +VQK P T S L PRTL+I REGI I +EKE Sbjct: 113 DEEHPLPPKNDFKNSDMVNKDIIKISAEVQKPPEKTYSIMLNPRTLLIIREGIFISIEKE 172 Query: 116 LIGLGYENTLKTTKRKMEK-RYLEGTTTIAPMLGKELADIYVDWDFDKDTSVIAYTF 171 LI LG + TL+ KR +EK R L + L +L D +VDW+FD+D S+I + Sbjct: 173 LIQLGSQETLRLAKRNLEKGRLLHHKNSFEEYLDAKLVDFFVDWNFDRDKSLILFNL 229 >Q2B3R1.1 Q2B3R1_9BACI Putative uncharacterized protein Length = 232 Score = 110 bits (275), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 94/170 (55%), Gaps = 1/170 (0%) Query: 1 LLNKEEEQAFRYTRELLMKSLLPELSAYLKDTMAIEVGELFYDWGIHNASGIIVALIKND 60 LL+ E+ + R++LM +L+ E+ Y++ + + + E +YDW + + SG+ + + Sbjct: 53 LLDTEQSKYVEKIRDMLMPALIEEIKVYIQMDIGVTIDEFYYDWNLESHSGMFIGVSTEA 112 Query: 61 DVAIDDYAGRDEVHAQINEVSRKVQKEPVHTDSWWLGPRTLIIKREGILIPLEKELIGLG 120 Y ++ VH ++ +VS + +K P S L PRTL+I R IL+ +EKELI G Sbjct: 113 APEYSHYQNQEAVHKEVIQVSLEAEKPPGEVYSSLLNPRTLVIVRNQILVAVEKELIRQG 172 Query: 121 YENTLKTTKRKMEKR-YLEGTTTIAPMLGKELADIYVDWDFDKDTSVIAY 169 Y L KR +EKR ++E L EL +++V WDF++D SV + Sbjct: 173 YPEVLTLAKRDLEKRLFMEHRPQFEHYLDAELENVFVSWDFEQDKSVCLF 222 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,021,726,557 Number of extensions: 41605781 Number of successful extensions: 100437 Number of sequences better than 1.0e-05: 6 Number of HSP's gapped: 100429 Number of HSP's successfully gapped: 6 Length of query: 172 Length of database: 3,060,696,203 Length adjustment: 126 Effective length of query: 46 Effective length of database: 1,873,648,313 Effective search space: 86187822398 Effective search space used: 86187822398 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)