BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0377.0008.p
         (48 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K522.1 B3K522_9BACI Extracellular solute-binding protein family 3    65   2e-09
B1D526.1 B1D526_9BACL Putative uncharacterized protein                 58   2e-07

>B3K522.1 B3K522_9BACI Extracellular solute-binding protein family 3
          Length = 337

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/48 (62%), Positives = 39/48 (81%)

Query: 1   VKQVSPISDIKDTPFTEEGTKLLEGTKNFLVEEKLAKKDFNISDWQLQ 48
           VK+VSPI  IK+ PFTE+G +LLEGTK FL+EEKLA+ DF + DW ++
Sbjct: 289 VKKVSPIELIKEVPFTEQGLQLLEGTKAFLIEEKLAETDFALDDWLIK 336


>B1D526.1 B1D526_9BACL Putative uncharacterized protein
          Length = 357

 Score = 58.2 bits (139), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/48 (54%), Positives = 35/48 (72%)

Query: 1   VKQVSPISDIKDTPFTEEGTKLLEGTKNFLVEEKLAKKDFNISDWQLQ 48
            K++SPIS I + PF  EG   + GTK+FLVEE LAKKD+ I DW+++
Sbjct: 310 AKKISPISYITEEPFPAEGITRITGTKDFLVEEGLAKKDYKIEDWEVK 357


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.310    0.131    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 284,087,038
Number of extensions: 7346107
Number of successful extensions: 13447
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 13447
Number of HSP's successfully gapped: 2
Length of query: 48
Length of database: 3,060,696,203
Length adjustment: 21
Effective length of query: 27
Effective length of database: 2,862,854,888
Effective search space: 77297081976
Effective search space used: 77297081976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 126 (53.1 bits)