BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0377.0005.p
         (446 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q1IIY3.1 Q1IIY3_ACIBL Pyrrolo-quinoline quinone                        59   1e-06

>Q1IIY3.1 Q1IIY3_ACIBL Pyrrolo-quinoline quinone
          Length = 432

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 140/332 (42%), Gaps = 52/332 (15%)

Query: 94  VAINVQTGKVAWKY--GAKLLGPLLYQKGVVYARSEGGTIYAVHADTGRNKWSSTVKAKG 151
           +A++++TGK+ WK+  GA+++       GVVY  S  G  YAV A TG+ KW    K  G
Sbjct: 75  LAVDLETGKLKWKFETGARIVSSPAVVDGVVYVASYDGNFYAVDAVTGKEKWK--FKTGG 132

Query: 152 KLSIDQDQLYAAD--SDIMAFRLGDGKFLWKDNYSEALFSPLVFQGNLVFAQNSSSGVYT 209
           +       L+ +   ++ M            D +   L SP+V  G + F     SG   
Sbjct: 133 EKRFAAPHLHGSTPVTETM-----------PDPFDSYLSSPVVVAGVVYFG----SGDTN 177

Query: 210 YMVLHAFDRTTGKHLWEADNQALPLTAANGTVLSQRLSNLIDLVPLTTLDSLDAKTGK-- 267
              L+A D +        D        A+GT+      +           ++DA TGK  
Sbjct: 178 VYALNAADGSLKWKFKTGDVVHASPALADGTLYVGSWDSY--------FYAIDAATGKEK 229

Query: 268 -RVKTAEYNPKNIDPVNPEPVNGVISSGGRAWLLGGQIYIGEGNSLYSYPLEADPSKVKA 326
            ++KT E    + D  N     G+ SS   A    G +Y G  +S + Y ++A   K   
Sbjct: 230 WKLKTGE----DHDIYNQV---GIQSSAAVA---DGVVYFGCRDSNF-YAVDA---KTGE 275

Query: 327 IKYTASGSGLSLDYAAGPYDGRVFF--SNAQAVYGIKTANQSPVPYPSGGQIARFD---L 381
            K+  +  G  +  +    DGRV+F  S+   VY +   N   V +  G     F    +
Sbjct: 276 KKWAFNNKGSWVISSPAVKDGRVYFATSDTGLVYALDL-NGKEVWHFDGKHWVVFSSPAI 334

Query: 382 LGHGMYLAEPSGKLMAINLLTAKPVLQLQTSG 413
            G+ +YL   +GKL AI+L + K   + +T G
Sbjct: 335 AGNTLYLGSHAGKLRAIDLTSGKLAWEFETDG 366


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.132    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 2,811,852,258
Number of extensions: 124275126
Number of successful extensions: 335081
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 335240
Number of HSP's successfully gapped: 25
Length of query: 446
Length of database: 3,060,696,203
Length adjustment: 139
Effective length of query: 307
Effective length of database: 1,751,175,118
Effective search space: 537610761226
Effective search space used: 537610761226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)